DACA2 - libb

STARTDATE 2018-08-22
STARTTIME 09:00:47
GIT-REVISION 0ca6ab1

ftp://ftp.se.debian.org/debian/pool/main/libb/libb-compiling-perl/libb-compiling-perl_0.06.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libb-debug-perl/libb-debug-perl_1.26.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libb-hooks-endofscope-perl/libb-hooks-endofscope-perl_0.24.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libb-hooks-op-annotation-perl/libb-hooks-op-annotation-perl_0.44.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libb-hooks-op-check-entersubforcv-perl/libb-hooks-op-check-entersubforcv-perl_0.10.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libb-hooks-op-check-perl/libb-hooks-op-check-perl_0.22.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libb-hooks-op-ppaddr-perl/libb-hooks-op-ppaddr-perl_0.06.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libb-hooks-parser-perl/libb-hooks-parser-perl_0.19.orig.tar.gz
[09:00]

ftp://ftp.se.debian.org/debian/pool/main/libb/libb-keywords-perl/libb-keywords-perl_1.18.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libb-lint-perl/libb-lint-perl_1.22.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libb-perlreq-perl/libb-perlreq-perl_0.82.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libb-utils-perl/libb-utils-perl_0.27.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libb2/libb2_0.98.orig.tar.gz
libb2-0.98/src/blake2b-ref.c:324:13: style: Same expression on both sides of '-='. [duplicateExpression]
libb2-0.98/src/blake2-config.h:67:0: error: #error "This code requires at least SSE2." [preprocessorErrorDirective]
libb2-0.98/src/blake2s-ref.c:314:13: style: Same expression on both sides of '-='. [duplicateExpression]
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libb64/libb64_1.2.orig.tar.gz
libb64-1.2.orig/src/cdecode.c:16:17: warning: Either the condition 'value_in>80' is redundant or the array 'decoding[80]' is accessed at index 80, which is out of bounds. [arrayIndexOutOfBoundsCond]
libb64-1.2.orig/src/cdecode.c:15:31: note: Assuming that condition 'value_in>80' is not redundant
libb64-1.2.orig/src/cdecode.c:16:17: note: Array index out of bounds
libb64-1.2.orig/src/cencode.c:32:7: style: The scope of the variable 'fragment' can be reduced. [variableScope]
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbackuppc-xs-perl/libbackuppc-xs-perl_0.54.orig.tar.gz
BackupPC-XS-0.54/rsync.h:290:0: error: #error Could not find a 32-bit integer variable [preprocessorErrorDirective]
BackupPC-XS-0.54/zlib/adler32.c:63:14: style: The scope of the variable 'n' can be reduced. [variableScope]
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbarcode-code128-perl/libbarcode-code128-perl_2.21.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbarcode-datamatrix-perl/libbarcode-datamatrix-perl_0.10.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbarcode-datamatrix-png-perl/libbarcode-datamatrix-png-perl_0.04.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbareword-filehandles-perl/libbareword-filehandles-perl_0.006.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbase/libbase_1.1.6.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbase58/libbase58_0.1.4.orig.tar.gz
libbase58-0.1.4/base58.c:43:11: style: The scope of the variable 'c' can be reduced. [variableScope]
libbase58-0.1.4/base58.c:35:34: style: Function 'b58tobin' argument 2 names different: declaration 'binsz' definition 'binszp'. [funcArgNamesDifferent]
libbase58-0.1.4/libbase58.h:13:41: note: Function 'b58tobin' argument 2 names different: declaration 'binsz' definition 'binszp'.
libbase58-0.1.4/base58.c:35:34: note: Function 'b58tobin' argument 2 names different: declaration 'binsz' definition 'binszp'.
libbase58-0.1.4/base58.c:122:57: style: Function 'b58check' argument 3 names different: declaration 'b58' definition 'base58str'. [funcArgNamesDifferent]
libbase58-0.1.4/libbase58.h:14:64: note: Function 'b58check' argument 3 names different: declaration 'b58' definition 'base58str'.
libbase58-0.1.4/base58.c:122:57: note: Function 'b58check' argument 3 names different: declaration 'b58' definition 'base58str'.
libbase58-0.1.4/base58.c:145:51: style: Function 'b58enc' argument 3 names different: declaration 'bin' definition 'data'. [funcArgNamesDifferent]
libbase58-0.1.4/libbase58.h:16:58: note: Function 'b58enc' argument 3 names different: declaration 'bin' definition 'data'.
libbase58-0.1.4/base58.c:145:51: note: Function 'b58enc' argument 3 names different: declaration 'bin' definition 'data'.
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbash/libbash_0.9.11.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbasicplayer-java/libbasicplayer-java_3.0.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbde/libbde_20180806.orig.tar.gz
libbde-20180806/bdetools/bdetools_signal.h:35:0: error: #error missing signal functions [preprocessorErrorDirective]
libbde-20180806/libbde/libbde_aes_ccm_encrypted_key.c:118:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_diffuser.c:188:9: style: The scope of the variable 'value_32bit_index1' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_diffuser.c:189:9: style: The scope of the variable 'value_32bit_index2' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_diffuser.c:190:9: style: The scope of the variable 'value_32bit_index3' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_diffuser.c:289:9: style: The scope of the variable 'value_32bit_index1' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_diffuser.c:290:9: style: The scope of the variable 'value_32bit_index2' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_diffuser.c:291:9: style: The scope of the variable 'value_32bit_index3' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_diffuser.c:538:9: style: The scope of the variable 'value_32bit_index1' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_diffuser.c:539:9: style: The scope of the variable 'value_32bit_index2' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_diffuser.c:540:9: style: The scope of the variable 'value_32bit_index3' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_diffuser.c:647:9: style: The scope of the variable 'value_32bit_index1' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_diffuser.c:648:9: style: The scope of the variable 'value_32bit_index2' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_diffuser.c:649:9: style: The scope of the variable 'value_32bit_index3' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_key.c:116:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_key_protector.c:118:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_metadata_entry.c:121:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_notify.c:52:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_notify.c:78:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_notify.c:102:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_sector_data.c:222:14: style: Function 'libbde_sector_data_read' argument 4 names different: declaration 'sector_offset' definition 'sector_data_offset'. [funcArgNamesDifferent]
libbde-20180806/libbde/libbde_sector_data.h:67:14: note: Function 'libbde_sector_data_read' argument 4 names different: declaration 'sector_offset' definition 'sector_data_offset'.
libbde-20180806/libbde/libbde_sector_data.c:222:14: note: Function 'libbde_sector_data_read' argument 4 names different: declaration 'sector_offset' definition 'sector_data_offset'.
libbde-20180806/libbde/libbde_stretch_key.c:116:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_support.c:60:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_support.c:86:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_support.c:110:18: style: Function 'libbde_check_volume_signature' argument 1 names different: declaration 'volumename' definition 'filename'. [funcArgNamesDifferent]
libbde-20180806/libbde/libbde_support.h:60:18: note: Function 'libbde_check_volume_signature' argument 1 names different: declaration 'volumename' definition 'filename'.
libbde-20180806/libbde/libbde_support.c:110:18: note: Function 'libbde_check_volume_signature' argument 1 names different: declaration 'volumename' definition 'filename'.
libbde-20180806/libbde/libbde_volume.c:1897:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libbde/libbde_volume.c:1963:9: style: The scope of the variable 'read_size' can be reduced. [variableScope]
libbde-20180806/libbfio/libbfio_file_pool.c:47:9: style: The scope of the variable 'name_length' can be reduced. [variableScope]
libbde-20180806/libbfio/libbfio_handle.c:203:6: style: The scope of the variable 'is_open' can be reduced. [variableScope]
libbde-20180806/libbfio/libbfio_handle.c:2147:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libbfio/libbfio_memory_range.c:199:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libbfio/libbfio_memory_range.c:889:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libbfio/libbfio_support.c:48:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libbfio/libbfio_support.c:74:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcaes/libcaes_context.c:463:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcaes/libcaes_context.c:776:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_array.c:373:6: style: The scope of the variable 'entry_iterator' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_array.c:690:9: style: The scope of the variable 'entries_size' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_array.c:692:6: style: The scope of the variable 'number_of_allocated_entries' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_array.c:922:6: style: The scope of the variable 'entry_iterator' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_array.c:923:6: style: The scope of the variable 'reverse_entry_iterator' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_array.c:1180:6: style: The scope of the variable 'compare_result' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_array.c:1181:6: style: The scope of the variable 'entry_index' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_btree.c:42:10: style: Function 'libcdata_btree_initialize' argument 2 names different: declaration 'maximum_number_of_sub_nodes' definition 'maximum_number_of_values'. [funcArgNamesDifferent]
libbde-20180806/libcdata/libcdata_btree.h:67:10: note: Function 'libcdata_btree_initialize' argument 2 names different: declaration 'maximum_number_of_sub_nodes' definition 'maximum_number_of_values'.
libbde-20180806/libcdata/libcdata_btree.c:42:10: note: Function 'libcdata_btree_initialize' argument 2 names different: declaration 'maximum_number_of_sub_nodes' definition 'maximum_number_of_values'.
libbde-20180806/libcdata/libcdata_list.c:1697:6: style: The scope of the variable 'compare_result' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_list.c:1698:6: style: The scope of the variable 'element_index' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_list_element.c:283:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_list_element.c:412:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_list_element.c:541:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_list_element.c:684:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_tree_node.c:724:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_tree_node.c:853:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_tree_node.c:982:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_tree_node.c:1111:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_tree_node.c:1268:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_tree_node.c:1413:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_tree_node.c:1844:6: style: The scope of the variable 'result' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_tree_node.c:1845:6: style: The scope of the variable 'sub_node_index' can be reduced. [variableScope]
libbde-20180806/libcdata/libcdata_tree_node.c:230:28: style: Function 'libcdata_tree_node_empty' argument 1 names different: declaration 'node' definition 'tree_node'. [funcArgNamesDifferent]
libbde-20180806/libcdata/libcdata_tree_node.h:91:28: note: Function 'libcdata_tree_node_empty' argument 1 names different: declaration 'node' definition 'tree_node'.
libbde-20180806/libcdata/libcdata_tree_node.c:230:28: note: Function 'libcdata_tree_node_empty' argument 1 names different: declaration 'node' definition 'tree_node'.
libbde-20180806/libcdata/libcdata_tree_node.c:1469:28: style: Function 'libcdata_internal_tree_node_append_node' argument 2 names different: declaration 'sub_node' definition 'node_to_append'. [funcArgNamesDifferent]
libbde-20180806/libcdata/libcdata_tree_node.h:188:28: note: Function 'libcdata_internal_tree_node_append_node' argument 2 names different: declaration 'sub_node' definition 'node_to_append'.
libbde-20180806/libcdata/libcdata_tree_node.c:1469:28: note: Function 'libcdata_internal_tree_node_append_node' argument 2 names different: declaration 'sub_node' definition 'node_to_append'.
libbde-20180806/libcdata/libcdata_tree_node.c:1633:28: style: Function 'libcdata_tree_node_append_node' argument 2 names different: declaration 'node_to_append' definition 'sub_node'. [funcArgNamesDifferent]
libbde-20180806/libcdata/libcdata_tree_node.h:194:28: note: Function 'libcdata_tree_node_append_node' argument 2 names different: declaration 'node_to_append' definition 'sub_node'.
libbde-20180806/libcdata/libcdata_tree_node.c:1633:28: note: Function 'libcdata_tree_node_append_node' argument 2 names different: declaration 'node_to_append' definition 'sub_node'.
libbde-20180806/libcdata/libcdata_tree_node.c:1828:28: style: Function 'libcdata_internal_tree_node_insert_node' argument 2 names different: declaration 'sub_node' definition 'node_to_insert'. [funcArgNamesDifferent]
libbde-20180806/libcdata/libcdata_tree_node.h:205:28: note: Function 'libcdata_internal_tree_node_insert_node' argument 2 names different: declaration 'sub_node' definition 'node_to_insert'.
libbde-20180806/libcdata/libcdata_tree_node.c:1828:28: note: Function 'libcdata_internal_tree_node_insert_node' argument 2 names different: declaration 'sub_node' definition 'node_to_insert'.
libbde-20180806/libcerror/libcerror_error.c:34:0: error: #error Missing headers stdarg.h and varargs.h [preprocessorErrorDirective]
libbde-20180806/libcerror/libcerror_system.c:42:0: error: #error Missing headers stdarg.h and varargs.h [preprocessorErrorDirective]
libbde-20180806/libcfile/libcfile_file.c:727:0: error: #error Missing file open function [preprocessorErrorDirective]
libbde-20180806/libcfile/libcfile_notify.c:52:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcfile/libcfile_notify.c:78:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcfile/libcfile_notify.c:102:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcfile/libcfile_support.c:302:0: error: #error Missing file exists function [preprocessorErrorDirective]
libbde-20180806/libclocale/libclocale_codepage.c:48:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libclocale/libclocale_codepage.c:74:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libclocale/libclocale_locale.c:308:16: style: Condition 'charset!=NULL' is always false [knownConditionTrueFalse]
libbde-20180806/libclocale/libclocale_locale.c:288:26: note: Assignment 'charset=NULL', assigned value is 0
libbde-20180806/libclocale/libclocale_locale.c:308:16: note: Condition 'charset!=NULL' is always false
libbde-20180806/libclocale/libclocale_locale.c:355:16: style: Condition 'locale==NULL' is always true [knownConditionTrueFalse]
libbde-20180806/libclocale/libclocale_locale.c:287:26: note: Assignment 'locale=NULL', assigned value is 0
libbde-20180806/libclocale/libclocale_locale.c:355:16: note: Condition 'locale==NULL' is always true
libbde-20180806/libclocale/libclocale_locale.c:308:16: style: Same expression on both sides of '!=' because the value of 'charset' and 'NULL' are the same. [duplicateExpression]
libbde-20180806/libclocale/libclocale_locale.c:288:26: note: 'charset' is assigned value 'NULL' here.
libbde-20180806/libclocale/libclocale_locale.c:308:16: note: Same expression on both sides of '!=' because the value of 'charset' and 'NULL' are the same.
libbde-20180806/libclocale/libclocale_locale.c:291:9: style: The scope of the variable 'locale_length' can be reduced. [variableScope]
libbde-20180806/libcnotify/libcnotify_print.c:32:0: error: #error Missing headers stdarg.h and varargs.h [preprocessorErrorDirective]
libbde-20180806/libcnotify/libcnotify_stream.c:49:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcnotify/libcnotify_stream.c:161:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcpath/libcpath_path.c:236:0: error: #error Missing change directory function [preprocessorErrorDirective]
libbde-20180806/libcpath/libcpath_support.c:48:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcpath/libcpath_support.c:74:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcsplit/libcsplit_narrow_split_string.c:240:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libcsplit/libcsplit_narrow_split_string.c:450:9: style: The scope of the variable 'string_segment_offset' can be reduced. [variableScope]
libbde-20180806/libcthreads/libcthreads_condition.h:83:0: error: #error Missing condition type [preprocessorErrorDirective]
libbde-20180806/libcthreads/libcthreads_lock.h:57:0: error: #error Missing lock type [preprocessorErrorDirective]
libbde-20180806/libcthreads/libcthreads_mutex.h:62:0: error: #error Missing mutex type [preprocessorErrorDirective]
libbde-20180806/libcthreads/libcthreads_read_write_lock.h:78:0: error: #error Missing read/write lock type [preprocessorErrorDirective]
libbde-20180806/libcthreads/libcthreads_thread.h:61:0: error: #error Missing thread type [preprocessorErrorDirective]
libbde-20180806/libcthreads/libcthreads_thread_attributes.h:57:0: error: #error Missing thread attributes type [preprocessorErrorDirective]
libbde-20180806/libfcache/libfcache_cache.c:384:11: style: Function 'libfcache_cache_get_number_of_cache_values' argument 2 names different: declaration 'number_of_values' definition 'number_of_cache_values'. [funcArgNamesDifferent]
libbde-20180806/libfcache/libfcache_cache.h:89:11: note: Function 'libfcache_cache_get_number_of_cache_values' argument 2 names different: declaration 'number_of_values' definition 'number_of_cache_values'.
libbde-20180806/libfcache/libfcache_cache.c:384:11: note: Function 'libfcache_cache_get_number_of_cache_values' argument 2 names different: declaration 'number_of_values' definition 'number_of_cache_values'.
libbde-20180806/libfcache/libfcache_cache_value.c:293:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfcache/libfcache_date_time.c:44:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_btree.c:2154:6: style: The scope of the variable 'result' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_btree.c:2360:6: style: The scope of the variable 'result' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_btree_node.c:244:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_btree_node.c:274:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_btree_node.c:304:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_list.c:480:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_list.c:888:6: style: The scope of the variable 'result' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_list.c:2311:6: style: The scope of the variable 'result' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_list.c:2831:6: style: The scope of the variable 'result' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_mapped_range.c:111:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_notify.c:52:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_notify.c:78:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_notify.c:102:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_range.c:112:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_range.c:338:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_stream.c:1512:10: style: The scope of the variable 'read_count' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_stream.c:1874:10: style: The scope of the variable 'write_count' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_tree_node.c:335:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_tree_node.c:363:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_tree_node.c:511:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_tree_node.c:1863:6: style: The scope of the variable 'last_sub_node_index' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_tree_node.c:1864:6: style: The scope of the variable 'split_sub_node_index' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_tree_node.c:2252:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdata/libfdata_tree_node.c:774:10: style: Function 'libfdata_tree_node_set_first_leaf_node_index' argument 3 names different: declaration 'deleted_first_leaf_node_index' definition 'first_deleted_leaf_node_index'. [funcArgNamesDifferent]
libbde-20180806/libfdata/libfdata_tree_node.h:174:10: note: Function 'libfdata_tree_node_set_first_leaf_node_index' argument 3 names different: declaration 'deleted_first_leaf_node_index' definition 'first_deleted_leaf_node_index'.
libbde-20180806/libfdata/libfdata_tree_node.c:774:10: note: Function 'libfdata_tree_node_set_first_leaf_node_index' argument 3 names different: declaration 'deleted_first_leaf_node_index' definition 'first_deleted_leaf_node_index'.
libbde-20180806/libfdata/libfdata_vector.c:987:11: style: The scope of the variable 'calculated_element_index' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:111:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:147:10: style: The scope of the variable 'days_in_month' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:385:11: style: The scope of the variable 'micro_seconds' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:386:11: style: The scope of the variable 'milli_seconds' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:387:11: style: The scope of the variable 'nano_seconds' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:388:11: style: The scope of the variable 'year_value' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:389:10: style: The scope of the variable 'days_in_month' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:898:11: style: The scope of the variable 'micro_seconds' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:899:11: style: The scope of the variable 'milli_seconds' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:900:11: style: The scope of the variable 'nano_seconds' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:901:11: style: The scope of the variable 'year_value' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:902:10: style: The scope of the variable 'days_in_month' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:1411:11: style: The scope of the variable 'micro_seconds' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:1412:11: style: The scope of the variable 'milli_seconds' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:1413:11: style: The scope of the variable 'nano_seconds' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:1414:11: style: The scope of the variable 'year_value' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_date_time_values.c:1415:10: style: The scope of the variable 'days_in_month' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_fat_date_time.c:115:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_fat_date_time.c:246:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_fat_date_time.c:605:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_fat_date_time.c:869:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_fat_date_time.c:1133:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_filetime.c:115:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_filetime.c:290:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_filetime.c:787:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_filetime.c:1051:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_filetime.c:1340:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_floatingtime.c:115:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_floatingtime.c:234:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_floatingtime.c:621:10: style: The scope of the variable 'byte_value' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_floatingtime.c:724:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_floatingtime.c:863:10: style: The scope of the variable 'byte_value' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_floatingtime.c:966:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_floatingtime.c:1105:10: style: The scope of the variable 'byte_value' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_floatingtime.c:1208:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_hfs_time.c:115:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_hfs_time.c:237:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_hfs_time.c:570:10: style: The scope of the variable 'byte_value' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_hfs_time.c:673:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_hfs_time.c:812:10: style: The scope of the variable 'byte_value' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_hfs_time.c:915:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_hfs_time.c:1101:10: style: The scope of the variable 'byte_value' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_hfs_time.c:1204:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_nsf_timedate.c:115:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_nsf_timedate.c:246:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_nsf_timedate.c:706:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_nsf_timedate.c:970:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_nsf_timedate.c:1234:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_posix_time.c:115:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_posix_time.c:965:10: style: The scope of the variable 'byte_value' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_posix_time.c:1068:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_posix_time.c:1207:10: style: The scope of the variable 'byte_value' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_posix_time.c:1310:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_posix_time.c:1449:10: style: The scope of the variable 'byte_value' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_posix_time.c:1552:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_systemtime.c:115:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_systemtime.c:862:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_systemtime.c:1258:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfdatetime/libfdatetime_systemtime.c:1654:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfguid/libfguid_identifier.c:114:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfguid/libfguid_identifier.c:468:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfguid/libfguid_identifier.c:849:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfguid/libfguid_identifier.c:1157:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfguid/libfguid_identifier.c:1538:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfguid/libfguid_identifier.c:1846:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfguid/libfguid_identifier.c:2227:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfguid/libfguid_identifier.c:464:13: style: Function 'libfguid_identifier_copy_from_utf8_string' argument 3 names different: declaration 'utf8_string_length' definition 'utf8_string_size'. [funcArgNamesDifferent]
libbde-20180806/libfguid/libfguid_identifier.h:101:13: note: Function 'libfguid_identifier_copy_from_utf8_string' argument 3 names different: declaration 'utf8_string_length' definition 'utf8_string_size'.
libbde-20180806/libfguid/libfguid_identifier.c:464:13: note: Function 'libfguid_identifier_copy_from_utf8_string' argument 3 names different: declaration 'utf8_string_length' definition 'utf8_string_size'.
libbde-20180806/libfguid/libfguid_identifier.c:1153:13: style: Function 'libfguid_identifier_copy_from_utf16_string' argument 3 names different: declaration 'utf16_string_length' definition 'utf16_string_size'. [funcArgNamesDifferent]
libbde-20180806/libfguid/libfguid_identifier.h:135:13: note: Function 'libfguid_identifier_copy_from_utf16_string' argument 3 names different: declaration 'utf16_string_length' definition 'utf16_string_size'.
libbde-20180806/libfguid/libfguid_identifier.c:1153:13: note: Function 'libfguid_identifier_copy_from_utf16_string' argument 3 names different: declaration 'utf16_string_length' definition 'utf16_string_size'.
libbde-20180806/libfguid/libfguid_identifier.c:1842:13: style: Function 'libfguid_identifier_copy_from_utf32_string' argument 3 names different: declaration 'utf32_string_length' definition 'utf32_string_size'. [funcArgNamesDifferent]
libbde-20180806/libfguid/libfguid_identifier.h:169:13: note: Function 'libfguid_identifier_copy_from_utf32_string' argument 3 names different: declaration 'utf32_string_length' definition 'utf32_string_size'.
libbde-20180806/libfguid/libfguid_identifier.c:1842:13: note: Function 'libfguid_identifier_copy_from_utf32_string' argument 3 names different: declaration 'utf32_string_length' definition 'utf32_string_size'.
libbde-20180806/libfvalue/libfvalue_binary_data.c:883:7: warning: Either the condition 'utf16_string_index==NULL' is redundant or there is possible null pointer dereference: utf16_string_index. [nullPointerRedundantCheck]
libbde-20180806/libfvalue/libfvalue_binary_data.c:947:25: note: Assuming that condition 'utf16_string_index==NULL' is not redundant
libbde-20180806/libfvalue/libfvalue_binary_data.c:883:7: note: Null pointer dereference
libbde-20180806/libfvalue/libfvalue_binary_data.c:1379:7: warning: Either the condition 'utf32_string_index==NULL' is redundant or there is possible null pointer dereference: utf32_string_index. [nullPointerRedundantCheck]
libbde-20180806/libfvalue/libfvalue_binary_data.c:1443:25: note: Assuming that condition 'utf32_string_index==NULL' is not redundant
libbde-20180806/libfvalue/libfvalue_binary_data.c:1379:7: note: Null pointer dereference
libbde-20180806/libfvalue/libfvalue_binary_data.c:112:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_binary_data.c:292:11: style: The scope of the variable 'format_flags' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_binary_data.c:444:11: style: The scope of the variable 'format_flags' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_binary_data.c:631:11: style: The scope of the variable 'format_flags' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_binary_data.c:845:9: style: The scope of the variable 'string_size' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_binary_data.c:846:11: style: The scope of the variable 'format_flags' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_binary_data.c:1127:11: style: The scope of the variable 'format_flags' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_binary_data.c:1341:9: style: The scope of the variable 'string_size' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_binary_data.c:1342:11: style: The scope of the variable 'format_flags' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_data_handle.c:605:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:112:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:853:10: style: The scope of the variable 'is_indeterminate' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:854:10: style: The scope of the variable 'is_infinite' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:855:10: style: The scope of the variable 'is_not_a_number' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:856:10: style: The scope of the variable 'is_signed' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:857:9: style: The scope of the variable 'bit_shift' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:1018:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:1066:10: style: The scope of the variable 'byte_value' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:1466:9: style: The scope of the variable 'fraction_index' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:1469:11: style: The scope of the variable 'divider' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:1473:10: style: The scope of the variable 'byte_value' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:1475:9: style: The scope of the variable 'bit_shift' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:1476:9: style: The scope of the variable 'sign' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:1477:9: style: The scope of the variable 'value_fraction' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:1832:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:1880:10: style: The scope of the variable 'byte_value' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:2280:9: style: The scope of the variable 'fraction_index' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:2283:11: style: The scope of the variable 'divider' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:2287:10: style: The scope of the variable 'byte_value' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:2289:9: style: The scope of the variable 'bit_shift' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:2290:9: style: The scope of the variable 'sign' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:2291:9: style: The scope of the variable 'value_fraction' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:2646:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:2694:10: style: The scope of the variable 'byte_value' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:3094:9: style: The scope of the variable 'fraction_index' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:3097:11: style: The scope of the variable 'divider' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:3101:10: style: The scope of the variable 'byte_value' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:3103:9: style: The scope of the variable 'bit_shift' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:3104:9: style: The scope of the variable 'sign' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_floating_point.c:3105:9: style: The scope of the variable 'value_fraction' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_integer.c:111:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_integer.c:904:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_integer.c:1186:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_integer.c:1568:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_integer.c:1850:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_integer.c:2232:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_integer.c:2514:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_split_utf16_string.c:239:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_split_utf16_string.c:449:9: style: The scope of the variable 'utf16_string_segment_offset' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_split_utf8_string.c:239:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_split_utf8_string.c:449:9: style: The scope of the variable 'utf8_string_segment_offset' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_string.c:118:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_string.c:794:6: style: The scope of the variable 'byte_order' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_string.c:795:6: style: The scope of the variable 'result' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_string.c:1016:6: style: The scope of the variable 'byte_order' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_string.c:1017:6: style: The scope of the variable 'result' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_string.c:1633:6: style: The scope of the variable 'byte_order' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_string.c:1634:6: style: The scope of the variable 'result' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_string.c:1855:6: style: The scope of the variable 'byte_order' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_string.c:1856:6: style: The scope of the variable 'result' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_string.c:2472:6: style: The scope of the variable 'byte_order' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_string.c:2473:6: style: The scope of the variable 'result' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_string.c:2694:6: style: The scope of the variable 'byte_order' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_string.c:2695:6: style: The scope of the variable 'result' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_value.c:1480:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_value.c:3920:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_value.c:4224:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_value.c:4530:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_value_entry.c:109:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_value_type.c:142:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libfvalue/libfvalue_value_type.c:1002:10: style: The scope of the variable 'data_index' can be reduced. [variableScope]
libbde-20180806/libhmac/libhmac_md5.c:645:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libhmac/libhmac_md5.c:959:9: style: The scope of the variable 'remaining_block_size' can be reduced. [variableScope]
libbde-20180806/libhmac/libhmac_sha1.c:718:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libhmac/libhmac_sha1.c:1031:9: style: The scope of the variable 'remaining_block_size' can be reduced. [variableScope]
libbde-20180806/libhmac/libhmac_sha224.c:677:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libhmac/libhmac_sha224.c:990:9: style: The scope of the variable 'remaining_block_size' can be reduced. [variableScope]
libbde-20180806/libhmac/libhmac_sha256.c:677:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libhmac/libhmac_sha256.c:990:9: style: The scope of the variable 'remaining_block_size' can be reduced. [variableScope]
libbde-20180806/libhmac/libhmac_sha512.c:713:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libhmac/libhmac_sha512.c:1026:9: style: The scope of the variable 'remaining_block_size' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_base16_stream.c:531:9: style: The scope of the variable 'whitespace_size' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_base16_stream.c:990:9: style: The scope of the variable 'whitespace_size' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_base16_stream.c:1123:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_base16_stream.c:1165:9: style: The scope of the variable 'whitespace_size' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_base32_stream.c:1773:10: style: The scope of the variable 'padding_size' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_base32_stream.c:2277:9: style: The scope of the variable 'whitespace_size' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_base32_stream.c:2686:9: style: The scope of the variable 'whitespace_size' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_base32_stream.c:2805:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_base32_stream.c:2846:9: style: The scope of the variable 'whitespace_size' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_base64_stream.c:2293:9: style: The scope of the variable 'whitespace_size' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_base64_stream.c:2461:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_base64_stream.c:2504:9: style: The scope of the variable 'whitespace_size' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_codepage_windows_932.c:4193:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_codepage_windows_936.c:6363:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_codepage_windows_949.c:7222:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_codepage_windows_950.c:5326:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_unicode_character.c:2985:10: style: The scope of the variable 'byte_bit_shift' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_unicode_character.c:3201:10: style: The scope of the variable 'byte_bit_shift' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_unicode_character.c:3601:10: style: The scope of the variable 'byte_bit_shift' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_unicode_character.c:3976:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_unicode_character.c:4495:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_unicode_character.c:5030:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf16_string.c:142:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf16_string.c:557:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf16_string.c:969:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf16_string.c:1253:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf16_string.c:1588:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf16_string.c:1731:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf16_string.c:1770:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf16_string.c:1950:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf16_string.c:2215:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf16_string.c:2526:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf16_string.c:2673:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf16_string.c:2712:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf16_string.c:2896:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf16_string.c:1138:21: style: Function 'libuna_utf16_string_size_from_utf8_stream' argument 1 names different: declaration 'utf16_stream' definition 'utf8_stream'. [funcArgNamesDifferent]
libbde-20180806/libuna/libuna_utf16_string.h:146:21: note: Function 'libuna_utf16_string_size_from_utf8_stream' argument 1 names different: declaration 'utf16_stream' definition 'utf8_stream'.
libbde-20180806/libuna/libuna_utf16_string.c:1138:21: note: Function 'libuna_utf16_string_size_from_utf8_stream' argument 1 names different: declaration 'utf16_stream' definition 'utf8_stream'.
libbde-20180806/libuna/libuna_utf16_string.c:1139:13: style: Function 'libuna_utf16_string_size_from_utf8_stream' argument 2 names different: declaration 'utf16_stream_size' definition 'utf8_stream_size'. [funcArgNamesDifferent]
libbde-20180806/libuna/libuna_utf16_string.h:147:13: note: Function 'libuna_utf16_string_size_from_utf8_stream' argument 2 names different: declaration 'utf16_stream_size' definition 'utf8_stream_size'.
libbde-20180806/libuna/libuna_utf16_string.c:1139:13: note: Function 'libuna_utf16_string_size_from_utf8_stream' argument 2 names different: declaration 'utf16_stream_size' definition 'utf8_stream_size'.
libbde-20180806/libuna/libuna_utf32_string.c:142:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf32_string.c:557:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf32_string.c:969:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf32_string.c:1253:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf32_string.c:1683:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf32_string.c:1861:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf32_string.c:2004:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf32_string.c:2043:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf32_string.c:2223:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf32_string.c:2393:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf32_string.c:2540:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf32_string.c:2579:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf32_string.c:2763:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf32_string.c:1138:21: style: Function 'libuna_utf32_string_size_from_utf8_stream' argument 1 names different: declaration 'utf32_stream' definition 'utf8_stream'. [funcArgNamesDifferent]
libbde-20180806/libuna/libuna_utf32_string.h:146:21: note: Function 'libuna_utf32_string_size_from_utf8_stream' argument 1 names different: declaration 'utf32_stream' definition 'utf8_stream'.
libbde-20180806/libuna/libuna_utf32_string.c:1138:21: note: Function 'libuna_utf32_string_size_from_utf8_stream' argument 1 names different: declaration 'utf32_stream' definition 'utf8_stream'.
libbde-20180806/libuna/libuna_utf32_string.c:1139:13: style: Function 'libuna_utf32_string_size_from_utf8_stream' argument 2 names different: declaration 'utf32_stream_size' definition 'utf8_stream_size'. [funcArgNamesDifferent]
libbde-20180806/libuna/libuna_utf32_string.h:147:13: note: Function 'libuna_utf32_string_size_from_utf8_stream' argument 2 names different: declaration 'utf32_stream_size' definition 'utf8_stream_size'.
libbde-20180806/libuna/libuna_utf32_string.c:1139:13: note: Function 'libuna_utf32_string_size_from_utf8_stream' argument 2 names different: declaration 'utf32_stream_size' definition 'utf8_stream_size'.
libbde-20180806/libuna/libuna_utf8_string.c:146:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf8_string.c:569:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf8_string.c:1000:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf8_string.c:1434:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf8_string.c:1745:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf8_string.c:1892:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf8_string.c:1931:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf8_string.c:2115:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf8_string.c:2380:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf8_string.c:2691:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf8_string.c:2842:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf8_string.c:2881:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/libuna/libuna_utf8_string.c:3069:6: style: The scope of the variable 'read_byte_order' can be reduced. [variableScope]
libbde-20180806/pybde/pybde.c:480:2: style: Variable 'module' is reassigned a value before the old one has been used. [redundantAssignment]
libbde-20180806/pybde/pybde.c:456:0: note: Variable 'module' is reassigned a value before the old one has been used.
libbde-20180806/pybde/pybde.c:480:2: note: Variable 'module' is reassigned a value before the old one has been used.
libbde-20180806/pybde/pybde.c:101:0: style: Variable 'version_string_length' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde.c:219:3: style: Variable 'Py_DecRef' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_encryption_methods.c:253:2: style: Variable 'definitions_object' is reassigned a value before the old one has been used. [redundantAssignment]
libbde-20180806/pybde/pybde_encryption_methods.c:250:0: note: Variable 'definitions_object' is reassigned a value before the old one has been used.
libbde-20180806/pybde/pybde_encryption_methods.c:253:2: note: Variable 'definitions_object' is reassigned a value before the old one has been used.
libbde-20180806/pybde/pybde_encryption_methods.c:293:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/pybde/pybde_error.c:32:0: error: #error Missing headers stdarg.h and varargs.h [preprocessorErrorDirective]
libbde-20180806/pybde/pybde_file_object_io_handle.c:214:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/pybde/pybde_file_object_io_handle.c:1205:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/pybde/pybde_integer.c:37:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/pybde/pybde_integer.c:75:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/pybde/pybde_key_protection_types.c:239:2: style: Variable 'definitions_object' is reassigned a value before the old one has been used. [redundantAssignment]
libbde-20180806/pybde/pybde_key_protection_types.c:236:0: note: Variable 'definitions_object' is reassigned a value before the old one has been used.
libbde-20180806/pybde/pybde_key_protection_types.c:239:2: note: Variable 'definitions_object' is reassigned a value before the old one has been used.
libbde-20180806/pybde/pybde_key_protection_types.c:279:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/pybde/pybde_key_protector.c:236:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/pybde/pybde_key_protector.c:262:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_key_protector.c:343:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_key_protector.c:404:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_key_protectors.c:233:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/pybde/pybde_key_protectors.c:306:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/pybde/pybde_key_protectors.c:378:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbde-20180806/pybde/pybde_volume.c:369:2: style: Variable 'pybde_volume' is reassigned a value before the old one has been used. [redundantAssignment]
libbde-20180806/pybde/pybde_volume.c:366:0: note: Variable 'pybde_volume' is reassigned a value before the old one has been used.
libbde-20180806/pybde/pybde_volume.c:369:2: note: Variable 'pybde_volume' is reassigned a value before the old one has been used.
libbde-20180806/pybde/pybde_volume.c:415:2: style: Variable 'pybde_volume' is reassigned a value before the old one has been used. [redundantAssignment]
libbde-20180806/pybde/pybde_volume.c:411:0: note: Variable 'pybde_volume' is reassigned a value before the old one has been used.
libbde-20180806/pybde/pybde_volume.c:415:2: note: Variable 'pybde_volume' is reassigned a value before the old one has been used.
libbde-20180806/pybde/pybde_volume.c:437:2: style: Variable 'pybde_volume' is reassigned a value before the old one has been used. [redundantAssignment]
libbde-20180806/pybde/pybde_volume.c:433:0: note: Variable 'pybde_volume' is reassigned a value before the old one has been used.
libbde-20180806/pybde/pybde_volume.c:437:2: note: Variable 'pybde_volume' is reassigned a value before the old one has been used.
libbde-20180806/pybde/pybde_volume.c:494:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:567:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:725:3: style: Variable 'Py_DecRef' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:921:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:994:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:1054:0: style: Variable 'read_count' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:1170:0: style: Variable 'read_count' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:1358:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:1410:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:1462:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:1515:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:1576:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:1635:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:1805:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:2054:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:2300:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:2535:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:2608:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/pybde/pybde_volume.c:2764:0: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbde-20180806/tests/bde_test_aes_ccm_encrypted_key.c:306:1: style: Label 'on_error' is not used. [unusedLabel]
libbde-20180806/tests/bde_test_external_key.c:306:1: style: Label 'on_error' is not used. [unusedLabel]
libbde-20180806/tests/bde_test_io_handle.c:412:1: style: Label 'on_error' is not used. [unusedLabel]
libbde-20180806/tests/bde_test_key.c:306:1: style: Label 'on_error' is not used. [unusedLabel]
libbde-20180806/tests/bde_test_metadata.c:1160:1: style: Label 'on_error' is not used. [unusedLabel]
libbde-20180806/tests/bde_test_metadata_entry.c:308:1: style: Label 'on_error' is not used. [unusedLabel]
libbde-20180806/tests/bde_test_password_keep.c:304:1: style: Label 'on_error' is not used. [unusedLabel]
libbde-20180806/tests/bde_test_sector_data.c:109:1: style: Label 'on_error' is not used. [unusedLabel]
libbde-20180806/tests/bde_test_stretch_key.c:306:1: style: Label 'on_error' is not used. [unusedLabel]
libbde-20180806/tests/bde_test_support.c:60:2: style: Variable 'version_string' is reassigned a value before the old one has been used. [redundantAssignment]
libbde-20180806/tests/bde_test_support.c:57:0: note: Variable 'version_string' is reassigned a value before the old one has been used.
libbde-20180806/tests/bde_test_support.c:60:2: note: Variable 'version_string' is reassigned a value before the old one has been used.
libbde-20180806/tests/bde_test_support.c:466:2: style: Variable 'memset_result' is reassigned a value before the old one has been used. [redundantAssignment]
libbde-20180806/tests/bde_test_support.c:460:0: note: Variable 'memset_result' is reassigned a value before the old one has been used.
libbde-20180806/tests/bde_test_support.c:466:2: note: Variable 'memset_result' is reassigned a value before the old one has been used.
libbde-20180806/tests/bde_test_volume_master_key.c:593:1: style: Label 'on_error' is not used. [unusedLabel]
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbdplus/libbdplus_0.1.2.orig.tar.bz2

ftp://ftp.se.debian.org/debian/pool/main/libb/libbenchmark-apps-perl/libbenchmark-apps-perl_0.04.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbenchmark-progressbar-perl/libbenchmark-progressbar-perl_0.00001.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbenchmark-timer-perl/libbenchmark-timer-perl_0.7112.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbencode-perl/libbencode-perl_1.501.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libberkeleydb-perl/libberkeleydb-perl_0.55.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbest-perl/libbest-perl_0.15.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbfio/libbfio_20170123.orig.tar.gz
libbfio-20170123/libbfio/libbfio_file_pool.c:47:9: style: The scope of the variable 'name_length' can be reduced. [variableScope]
libbfio-20170123/libbfio/libbfio_handle.c:203:6: style: The scope of the variable 'is_open' can be reduced. [variableScope]
libbfio-20170123/libbfio/libbfio_handle.c:2147:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libbfio/libbfio_memory_range.c:199:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libbfio/libbfio_memory_range.c:889:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libbfio/libbfio_support.c:48:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libbfio/libbfio_support.c:74:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_array.c:367:6: style: The scope of the variable 'entry_iterator' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_array.c:681:9: style: The scope of the variable 'entries_size' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_array.c:683:6: style: The scope of the variable 'number_of_allocated_entries' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_array.c:907:6: style: The scope of the variable 'entry_iterator' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_array.c:908:6: style: The scope of the variable 'reverse_entry_iterator' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_array.c:1165:6: style: The scope of the variable 'compare_result' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_array.c:1166:6: style: The scope of the variable 'entry_index' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_btree.c:41:10: style: Function 'libcdata_btree_initialize' argument 2 names different: declaration 'maximum_number_of_sub_nodes' definition 'maximum_number_of_values'. [funcArgNamesDifferent]
libbfio-20170123/libcdata/libcdata_btree.h:60:10: note: Function 'libcdata_btree_initialize' argument 2 names different: declaration 'maximum_number_of_sub_nodes' definition 'maximum_number_of_values'.
libbfio-20170123/libcdata/libcdata_btree.c:41:10: note: Function 'libcdata_btree_initialize' argument 2 names different: declaration 'maximum_number_of_sub_nodes' definition 'maximum_number_of_values'.
libbfio-20170123/libcdata/libcdata_list.c:206:6: style: The scope of the variable 'element_index' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_list.c:207:6: style: The scope of the variable 'number_of_elements' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_list_element.c:283:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_list_element.c:412:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_list_element.c:541:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_list_element.c:684:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_range_list.c:172:6: style: The scope of the variable 'element_index' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_range_list.c:173:6: style: The scope of the variable 'number_of_elements' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_range_list.c:3211:6: style: The scope of the variable 'element_index' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_tree_node.c:123:6: style: The scope of the variable 'number_of_sub_nodes' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_tree_node.c:125:6: style: The scope of the variable 'sub_node_index' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_tree_node.c:671:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_tree_node.c:740:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_tree_node.c:809:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_tree_node.c:878:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_tree_node.c:975:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_tree_node.c:1216:6: style: The scope of the variable 'result' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_tree_node.c:1217:6: style: The scope of the variable 'sub_node_index' can be reduced. [variableScope]
libbfio-20170123/libcdata/libcdata_tree_node.c:2033:6: style: The scope of the variable 'sub_node_index' can be reduced. [variableScope]
libbfio-20170123/libcerror/libcerror_error.c:34:0: error: #error Missing headers stdarg.h and varargs.h [preprocessorErrorDirective]
libbfio-20170123/libcerror/libcerror_system.c:42:0: error: #error Missing headers stdarg.h and varargs.h [preprocessorErrorDirective]
libbfio-20170123/libcfile/libcfile_file.c:727:0: error: #error Missing file open function [preprocessorErrorDirective]
libbfio-20170123/libcfile/libcfile_notify.c:52:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcfile/libcfile_notify.c:78:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcfile/libcfile_notify.c:102:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcfile/libcfile_support.c:302:0: error: #error Missing file exists function [preprocessorErrorDirective]
libbfio-20170123/libclocale/libclocale_codepage.c:48:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libclocale/libclocale_codepage.c:74:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libclocale/libclocale_locale.c:121:16: style: Condition 'charset!=NULL' is always false [knownConditionTrueFalse]
libbfio-20170123/libclocale/libclocale_locale.c:101:26: note: Assignment 'charset=NULL', assigned value is 0
libbfio-20170123/libclocale/libclocale_locale.c:121:16: note: Condition 'charset!=NULL' is always false
libbfio-20170123/libclocale/libclocale_locale.c:168:16: style: Condition 'locale==NULL' is always true [knownConditionTrueFalse]
libbfio-20170123/libclocale/libclocale_locale.c:100:26: note: Assignment 'locale=NULL', assigned value is 0
libbfio-20170123/libclocale/libclocale_locale.c:168:16: note: Condition 'locale==NULL' is always true
libbfio-20170123/libclocale/libclocale_locale.c:121:16: style: Same expression on both sides of '!=' because the value of 'charset' and 'NULL' are the same. [duplicateExpression]
libbfio-20170123/libclocale/libclocale_locale.c:101:26: note: 'charset' is assigned value 'NULL' here.
libbfio-20170123/libclocale/libclocale_locale.c:121:16: note: Same expression on both sides of '!=' because the value of 'charset' and 'NULL' are the same.
libbfio-20170123/libclocale/libclocale_locale.c:102:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libclocale/libclocale_locale.c:104:9: style: The scope of the variable 'locale_length' can be reduced. [variableScope]
libbfio-20170123/libcnotify/libcnotify_print.c:32:0: error: #error Missing headers stdarg.h and varargs.h [preprocessorErrorDirective]
libbfio-20170123/libcnotify/libcnotify_stream.c:49:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcnotify/libcnotify_stream.c:161:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcpath/libcpath_path.c:246:0: error: #error Missing change directory function [preprocessorErrorDirective]
libbfio-20170123/libcpath/libcpath_support.c:48:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcpath/libcpath_support.c:74:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcsplit/libcsplit_narrow_split_string.c:240:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libcsplit/libcsplit_narrow_split_string.c:450:9: style: The scope of the variable 'string_segment_offset' can be reduced. [variableScope]
libbfio-20170123/libcthreads/libcthreads_condition.h:83:0: error: #error Missing condition type [preprocessorErrorDirective]
libbfio-20170123/libcthreads/libcthreads_lock.h:57:0: error: #error Missing lock type [preprocessorErrorDirective]
libbfio-20170123/libcthreads/libcthreads_mutex.h:62:0: error: #error Missing mutex type [preprocessorErrorDirective]
libbfio-20170123/libcthreads/libcthreads_read_write_lock.h:83:0: error: #error Missing read/write lock type [preprocessorErrorDirective]
libbfio-20170123/libcthreads/libcthreads_thread.h:61:0: error: #error Missing thread type [preprocessorErrorDirective]
libbfio-20170123/libcthreads/libcthreads_thread_attributes.h:57:0: error: #error Missing thread attributes type [preprocessorErrorDirective]
libbfio-20170123/libuna/libuna_base16_stream.c:1114:9: style: The scope of the variable 'whitespace_size' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_base16_stream.c:1230:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_base16_stream.c:1272:9: style: The scope of the variable 'whitespace_size' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_base32_stream.c:1718:29: warning: Identical inner 'if' condition is always true. [identicalInnerCondition]
libbfio-20170123/libuna/libuna_base32_stream.c:1706:29: note: outer condition: base32_stream_index<base32_stream_size
libbfio-20170123/libuna/libuna_base32_stream.c:1718:29: note: identical inner condition: base32_stream_index<base32_stream_size
libbfio-20170123/libuna/libuna_base32_stream.c:2008:29: warning: Identical inner 'if' condition is always true. [identicalInnerCondition]
libbfio-20170123/libuna/libuna_base32_stream.c:1996:29: note: outer condition: base32_stream_index<base32_stream_size
libbfio-20170123/libuna/libuna_base32_stream.c:2008:29: note: identical inner condition: base32_stream_index<base32_stream_size
libbfio-20170123/libuna/libuna_base32_stream.c:2161:9: style: The scope of the variable 'whitespace_size' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_base32_stream.c:2252:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_base32_stream.c:2293:9: style: The scope of the variable 'whitespace_size' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_base64_stream.c:2219:9: style: The scope of the variable 'whitespace_size' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_base64_stream.c:2381:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_base64_stream.c:2424:9: style: The scope of the variable 'whitespace_size' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_codepage_windows_932.c:4392:88: warning: Either the condition 'additional_character<234' is redundant or the array 'libuna_codepage_windows_932_byte_stream_to_unicode_base_0x81da[15]' is accessed at index 15, which is out of bounds. [arrayIndexOutOfBoundsCond]
libbfio-20170123/libuna/libuna_codepage_windows_932.c:4388:36: note: Assuming that condition 'additional_character<234' is not redundant
libbfio-20170123/libuna/libuna_codepage_windows_932.c:4390:5: note: Compound assignment '-=', assigned value is 15
libbfio-20170123/libuna/libuna_codepage_windows_932.c:4392:88: note: Array index out of bounds
libbfio-20170123/libuna/libuna_codepage_windows_932.c:4193:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_codepage_windows_936.c:6363:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_codepage_windows_949.c:7280:86: warning: Either the condition 'unicode_character<64020' is redundant or the array 'libuna_codepage_windows_949_unicode_to_byte_stream_base_0xf900[268]' is accessed at index 275, which is out of bounds. [arrayIndexOutOfBoundsCond]
libbfio-20170123/libuna/libuna_codepage_windows_949.c:7277:31: note: Assuming that condition 'unicode_character<64020' is not redundant
libbfio-20170123/libuna/libuna_codepage_windows_949.c:7279:3: note: Compound assignment '-=', assigned value is 275
libbfio-20170123/libuna/libuna_codepage_windows_949.c:7280:86: note: Array index out of bounds
libbfio-20170123/libuna/libuna_codepage_windows_949.c:8213:86: warning: Either the condition 'unicode_character<64020' is redundant or the array 'libuna_codepage_windows_949_unicode_to_byte_stream_base_0xf900[268]' is accessed at index 275, which is out of bounds. [arrayIndexOutOfBoundsCond]
libbfio-20170123/libuna/libuna_codepage_windows_949.c:8210:31: note: Assuming that condition 'unicode_character<64020' is not redundant
libbfio-20170123/libuna/libuna_codepage_windows_949.c:8212:3: note: Compound assignment '-=', assigned value is 275
libbfio-20170123/libuna/libuna_codepage_windows_949.c:8213:86: note: Array index out of bounds
libbfio-20170123/libuna/libuna_codepage_windows_949.c:7222:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_codepage_windows_950.c:5326:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_unicode_character.c:2943:10: style: The scope of the variable 'byte_bit_shift' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_unicode_character.c:3232:10: style: The scope of the variable 'byte_bit_shift' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_unicode_character.c:3709:10: style: The scope of the variable 'byte_bit_shift' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_unicode_character.c:4128:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_unicode_character.c:4647:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_unicode_character.c:5182:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf16_string.c:138:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf16_string.c:543:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf16_string.c:950:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf16_string.c:1211:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf16_string.c:1700:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf16_string.c:2185:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf16_string.c:2610:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf16_string.c:1089:21: style: Function 'libuna_utf16_string_size_from_utf8_stream' argument 1 names different: declaration 'utf16_stream' definition 'utf8_stream'. [funcArgNamesDifferent]
libbfio-20170123/libuna/libuna_utf16_string.h:146:21: note: Function 'libuna_utf16_string_size_from_utf8_stream' argument 1 names different: declaration 'utf16_stream' definition 'utf8_stream'.
libbfio-20170123/libuna/libuna_utf16_string.c:1089:21: note: Function 'libuna_utf16_string_size_from_utf8_stream' argument 1 names different: declaration 'utf16_stream' definition 'utf8_stream'.
libbfio-20170123/libuna/libuna_utf16_string.c:1090:13: style: Function 'libuna_utf16_string_size_from_utf8_stream' argument 2 names different: declaration 'utf16_stream_size' definition 'utf8_stream_size'. [funcArgNamesDifferent]
libbfio-20170123/libuna/libuna_utf16_string.h:147:13: note: Function 'libuna_utf16_string_size_from_utf8_stream' argument 2 names different: declaration 'utf16_stream_size' definition 'utf8_stream_size'.
libbfio-20170123/libuna/libuna_utf16_string.c:1090:13: note: Function 'libuna_utf16_string_size_from_utf8_stream' argument 2 names different: declaration 'utf16_stream_size' definition 'utf8_stream_size'.
libbfio-20170123/libuna/libuna_utf32_string.c:138:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf32_string.c:543:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf32_string.c:951:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf32_string.c:1212:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf32_string.c:1637:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf32_string.c:1934:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf32_string.c:2489:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf32_string.c:1090:21: style: Function 'libuna_utf32_string_size_from_utf8_stream' argument 1 names different: declaration 'utf32_stream' definition 'utf8_stream'. [funcArgNamesDifferent]
libbfio-20170123/libuna/libuna_utf32_string.h:146:21: note: Function 'libuna_utf32_string_size_from_utf8_stream' argument 1 names different: declaration 'utf32_stream' definition 'utf8_stream'.
libbfio-20170123/libuna/libuna_utf32_string.c:1090:21: note: Function 'libuna_utf32_string_size_from_utf8_stream' argument 1 names different: declaration 'utf32_stream' definition 'utf8_stream'.
libbfio-20170123/libuna/libuna_utf32_string.c:1091:13: style: Function 'libuna_utf32_string_size_from_utf8_stream' argument 2 names different: declaration 'utf32_stream_size' definition 'utf8_stream_size'. [funcArgNamesDifferent]
libbfio-20170123/libuna/libuna_utf32_string.h:147:13: note: Function 'libuna_utf32_string_size_from_utf8_stream' argument 2 names different: declaration 'utf32_stream_size' definition 'utf8_stream_size'.
libbfio-20170123/libuna/libuna_utf32_string.c:1091:13: note: Function 'libuna_utf32_string_size_from_utf8_stream' argument 2 names different: declaration 'utf32_stream_size' definition 'utf8_stream_size'.
libbfio-20170123/libuna/libuna_utf8_string.c:138:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf8_string.c:543:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf8_string.c:978:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf8_string.c:1403:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf8_string.c:1822:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf8_string.c:2307:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/libuna/libuna_utf8_string.c:2732:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/tests/bfio_test_handle_read.c:46:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/tests/bfio_test_handle_read.c:147:9: style: The scope of the variable 'read_size' can be reduced. [variableScope]
libbfio-20170123/tests/bfio_test_handle_read.c:148:10: style: The scope of the variable 'read_count' can be reduced. [variableScope]
libbfio-20170123/tests/bfio_test_handle_write.c:253:13: style: Condition 'result!=0' is always true [knownConditionTrueFalse]
libbfio-20170123/tests/bfio_test_handle_write.c:51:29: note: Assignment 'result=1', assigned value is 1
libbfio-20170123/tests/bfio_test_handle_write.c:253:13: note: Condition 'result!=0' is always true
libbfio-20170123/tests/bfio_test_pool.c:778:12: style: Same expression on both sides of '!=' because the value of 'error' and 'NULL' are the same. [duplicateExpression]
libbfio-20170123/tests/bfio_test_pool.c:754:31: note: 'error' is assigned value 'NULL' here.
libbfio-20170123/tests/bfio_test_pool.c:778:12: note: Same expression on both sides of '!=' because the value of 'error' and 'NULL' are the same.
libbfio-20170123/tests/bfio_test_pool_read.c:47:15: style: The scope of the variable 'function' can be reduced. [variableScope]
libbfio-20170123/tests/bfio_test_pool_read.c:152:9: style: The scope of the variable 'read_size' can be reduced. [variableScope]
libbfio-20170123/tests/bfio_test_pool_read.c:153:10: style: The scope of the variable 'read_count' can be reduced. [variableScope]
libbfio-20170123/tests/bfio_test_pool_write.c:291:13: style: Condition 'result!=0' is always true [knownConditionTrueFalse]
libbfio-20170123/tests/bfio_test_pool_write.c:53:29: note: Assignment 'result=1', assigned value is 1
libbfio-20170123/tests/bfio_test_pool_write.c:291:13: note: Condition 'result!=0' is always true
libbfio-20170123/tests/bfio_test_support.c:45:2: style: Variable 'version_string' is reassigned a value before the old one has been used. [redundantAssignment]
libbfio-20170123/tests/bfio_test_support.c:42:0: note: Variable 'version_string' is reassigned a value before the old one has been used.
libbfio-20170123/tests/bfio_test_support.c:45:2: note: Variable 'version_string' is reassigned a value before the old one has been used.
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbiblio-citation-parser-perl/libbiblio-citation-parser-perl_1.10+dfsg.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbiblio-endnotestyle-perl/libbiblio-endnotestyle-perl_0.06.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbiblio-isis-perl/libbiblio-isis-perl_0.24.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbiblio-thesaurus-perl/libbiblio-thesaurus-perl_0.43.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbind/libbind_6.0.orig.tar.gz
libbind-6.0/dst/dst_api.c:707:6: style: The scope of the variable 'enc_len' can be reduced. [variableScope]
libbind-6.0/dst/dst_api.c:793:6: style: The scope of the variable 'len' can be reduced. [variableScope]
libbind-6.0/inet/inet_addr.c:111:6: style: The scope of the variable 'base' can be reduced. [variableScope]
libbind-6.0/inet/inet_cidr_ntop.c:142:3: warning: Assignment of function parameter has no effect outside the function. Did you forget dereferencing it? [uselessAssignmentPtrArg]
libbind-6.0/inet/inet_cidr_ntop.c:142:10: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbind-6.0/inet/inet_cidr_ntop.c:250:9: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbind-6.0/inet/inet_cidr_ntop.c:78:8: style: The scope of the variable 't' can be reduced. [variableScope]
libbind-6.0/inet/inet_cidr_pton.c:257:8: style: The scope of the variable 'cp' can be reduced. [variableScope]
libbind-6.0/inet/inet_cidr_pton.c:257:12: style: The scope of the variable 'ch' can be reduced. [variableScope]
libbind-6.0/inet/inet_net_ntop.c:143:2: warning: Assignment of function parameter has no effect outside the function. Did you forget dereferencing it? [uselessAssignmentPtrArg]
libbind-6.0/inet/inet_net_ntop.c:143:9: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbind-6.0/inet/inet_net_ntop.c:267:2: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbind-6.0/inet/inet_net_ntop.c:200:11: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
libbind-6.0/inet/inet_pton.c:143:14: style: The scope of the variable 'xdigits' can be reduced. [variableScope]
libbind-6.0/inet/nsap_addr.c:81:6: style: The scope of the variable 'nib' can be reduced. [variableScope]
libbind-6.0/irs/dns_ho.c:1019:12: style: Same expression on both sides of '==' because the value of 'error' and 'NETDB_SUCCESS' are the same. [duplicateExpression]
libbind-6.0/irs/dns_ho.c:685:14: note: 'error' is assigned value 'NETDB_SUCCESS' here.
libbind-6.0/irs/dns_ho.c:1019:12: note: Same expression on both sides of '==' because the value of 'error' and 'NETDB_SUCCESS' are the same.
libbind-6.0/irs/dns_ho.c:226:18: style: The scope of the variable 'hp' can be reduced. [variableScope]
libbind-6.0/irs/dns_ho.c:1069:45: style: Function 'map_v4v6_hostent' argument 2 names different: declaration 'bp' definition 'bpp'. [funcArgNamesDifferent]
libbind-6.0/irs/dns_ho.c:162:58: note: Function 'map_v4v6_hostent' argument 2 names different: declaration 'bp' definition 'bpp'.
libbind-6.0/irs/dns_ho.c:1069:45: note: Function 'map_v4v6_hostent' argument 2 names different: declaration 'bp' definition 'bpp'.
libbind-6.0/irs/dns_ho.c:136:10: style: union member 'align::al' is never used. [unusedStructMember]
libbind-6.0/irs/dns_ho.c:137:7: style: union member 'align::ac' is never used. [unusedStructMember]
libbind-6.0/irs/dns_nw.c:70:7: style: union member 'align::al' is never used. [unusedStructMember]
libbind-6.0/irs/dns_nw.c:71:7: style: union member 'align::ac' is never used. [unusedStructMember]
libbind-6.0/irs/gen.c:265:50: style: Function 'find_name' argument 2 names different: declaration 'nv' definition 'names'. [funcArgNamesDifferent]
libbind-6.0/irs/gen.c:111:58: note: Function 'find_name' argument 2 names different: declaration 'nv' definition 'names'.
libbind-6.0/irs/gen.c:265:50: note: Function 'find_name' argument 2 names different: declaration 'nv' definition 'names'.
libbind-6.0/irs/gen.c:393:3: error: Resource leak: conf [resourceLeak]
libbind-6.0/irs/gen_ho.c:128:18: style: The scope of the variable 'rval' can be reduced. [variableScope]
libbind-6.0/irs/gen_ho.c:129:17: style: The scope of the variable 'ho' can be reduced. [variableScope]
libbind-6.0/irs/gen_ho.c:171:18: style: The scope of the variable 'rval' can be reduced. [variableScope]
libbind-6.0/irs/gen_ho.c:172:17: style: The scope of the variable 'ho' can be reduced. [variableScope]
libbind-6.0/irs/gen_ho.c:210:18: style: The scope of the variable 'rval' can be reduced. [variableScope]
libbind-6.0/irs/gen_ho.c:211:17: style: The scope of the variable 'ho' can be reduced. [variableScope]
libbind-6.0/irs/gen_ho.c:250:18: style: The scope of the variable 'rval' can be reduced. [variableScope]
libbind-6.0/irs/gen_ho.c:251:17: style: The scope of the variable 'ho' can be reduced. [variableScope]
libbind-6.0/irs/gen_ho.c:272:17: style: The scope of the variable 'ho' can be reduced. [variableScope]
libbind-6.0/irs/gen_ho.c:340:17: style: The scope of the variable 'ho' can be reduced. [variableScope]
libbind-6.0/irs/gen_ng.c:111:17: style: The scope of the variable 'ng' can be reduced. [variableScope]
libbind-6.0/irs/gen_ng.c:134:17: style: The scope of the variable 'ng' can be reduced. [variableScope]
libbind-6.0/irs/gen_ng.c:150:17: style: The scope of the variable 'ng' can be reduced. [variableScope]
libbind-6.0/irs/gen_nw.c:119:16: style: The scope of the variable 'rval' can be reduced. [variableScope]
libbind-6.0/irs/gen_nw.c:120:17: style: The scope of the variable 'nw' can be reduced. [variableScope]
libbind-6.0/irs/gen_nw.c:145:16: style: The scope of the variable 'rval' can be reduced. [variableScope]
libbind-6.0/irs/gen_nw.c:146:17: style: The scope of the variable 'nw' can be reduced. [variableScope]
libbind-6.0/irs/gen_nw.c:168:16: style: The scope of the variable 'rval' can be reduced. [variableScope]
libbind-6.0/irs/gen_nw.c:169:17: style: The scope of the variable 'nw' can be reduced. [variableScope]
libbind-6.0/irs/gen_nw.c:190:17: style: The scope of the variable 'nw' can be reduced. [variableScope]
libbind-6.0/irs/gen_pr.c:111:19: style: The scope of the variable 'rval' can be reduced. [variableScope]
libbind-6.0/irs/gen_pr.c:112:17: style: The scope of the variable 'pr' can be reduced. [variableScope]
libbind-6.0/irs/gen_pr.c:135:17: style: The scope of the variable 'pr' can be reduced. [variableScope]
libbind-6.0/irs/gen_pr.c:152:17: style: The scope of the variable 'pr' can be reduced. [variableScope]
libbind-6.0/irs/gen_pr.c:167:17: style: The scope of the variable 'pr' can be reduced. [variableScope]
libbind-6.0/irs/gen_sv.c:112:18: style: The scope of the variable 'rval' can be reduced. [variableScope]
libbind-6.0/irs/gen_sv.c:113:17: style: The scope of the variable 'sv' can be reduced. [variableScope]
libbind-6.0/irs/gen_sv.c:136:17: style: The scope of the variable 'sv' can be reduced. [variableScope]
libbind-6.0/irs/gen_sv.c:153:17: style: The scope of the variable 'sv' can be reduced. [variableScope]
libbind-6.0/irs/gen_sv.c:168:17: style: The scope of the variable 'sv' can be reduced. [variableScope]
libbind-6.0/irs/getaddrinfo.c:1140:2: style: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
libbind-6.0/irs/getaddrinfo.c:1142:2: note: Found duplicate branches for 'if' and 'else'.
libbind-6.0/irs/getaddrinfo.c:1140:2: note: Found duplicate branches for 'if' and 'else'.
libbind-6.0/irs/getaddrinfo.c:988:14: style: The scope of the variable 'proto' can be reduced. [variableScope]
libbind-6.0/irs/gethostent.c:896:41: warning: Either the condition 'he2!=NULL' is redundant or there is possible null pointer dereference: he2. [nullPointerRedundantCheck]
libbind-6.0/irs/gethostent.c:816:10: note: Assuming that condition 'he2!=NULL' is not redundant
libbind-6.0/irs/gethostent.c:896:41: note: Null pointer dereference
libbind-6.0/irs/gethostent.c:909:22: warning: Either the condition 'he2!=NULL' is redundant or there is possible null pointer dereference: he2. [nullPointerRedundantCheck]
libbind-6.0/irs/gethostent.c:816:10: note: Assuming that condition 'he2!=NULL' is not redundant
libbind-6.0/irs/gethostent.c:909:22: note: Null pointer dereference
libbind-6.0/irs/gethostent.c:912:51: warning: Either the condition 'he2!=NULL' is redundant or there is possible null pointer dereference: he2. [nullPointerRedundantCheck]
libbind-6.0/irs/gethostent.c:816:10: note: Assuming that condition 'he2!=NULL' is not redundant
libbind-6.0/irs/gethostent.c:912:51: note: Null pointer dereference
libbind-6.0/irs/gethostent.c:715:14: warning: Either the condition 'buf!=NULL' is redundant or there is pointer arithmetic with NULL pointer. [nullPointerArithmeticRedundantCheck]
libbind-6.0/irs/gethostent.c:778:10: note: Assuming that condition 'buf!=NULL' is not redundant
libbind-6.0/irs/gethostent.c:715:14: note: Null pointer addition
libbind-6.0/irs/gethostent.c:118:18: style: The scope of the variable 'hp' can be reduced. [variableScope]
libbind-6.0/irs/gethostent.c:137:9: style: The scope of the variable 'hap' can be reduced. [variableScope]
libbind-6.0/irs/gethostent.c:163:9: style: The scope of the variable 'hap' can be reduced. [variableScope]
libbind-6.0/irs/gethostent.c:348:24: style: The scope of the variable 'he2' can be reduced. [variableScope]
libbind-6.0/irs/gethostent.c:642:8: style: union member 'Anonymous0::_pad' is never used. [unusedStructMember]
libbind-6.0/irs/getnetent.c:125:9: style: The scope of the variable 'nap' can be reduced. [variableScope]
libbind-6.0/irs/getprotoent.c:100:9: style: The scope of the variable 'pap' can be reduced. [variableScope]
libbind-6.0/irs/getservent.c:101:9: style: The scope of the variable 'sap' can be reduced. [variableScope]
libbind-6.0/irs/irp.c:281:12: style: The scope of the variable 'start' can be reduced. [variableScope]
libbind-6.0/irs/irp.c:523:6: style: The scope of the variable 'i' can be reduced. [variableScope]
libbind-6.0/irs/irp_ho.c:228:9: style: The scope of the variable 'p' can be reduced. [variableScope]
libbind-6.0/irs/irp_ng.c:206:6: style: The scope of the variable 'code' can be reduced. [variableScope]
libbind-6.0/irs/irp_ng.c:207:7: style: The scope of the variable 'text' can be reduced. [variableScope]
libbind-6.0/irs/irp_nw.c:329:9: style: The scope of the variable 'p' can be reduced. [variableScope]
libbind-6.0/irs/irpmarshall.c:1664:9: style: The scope of the variable 'aptr' can be reduced. [variableScope]
libbind-6.0/irs/irpmarshall.c:1799:44: style: Function 'getfield' argument 3 names different: declaration 'buffer' definition 'ptr'. [funcArgNamesDifferent]
libbind-6.0/irs/irpmarshall.c:99:60: note: Function 'getfield' argument 3 names different: declaration 'buffer' definition 'ptr'.
libbind-6.0/irs/irpmarshall.c:1799:44: note: Function 'getfield' argument 3 names different: declaration 'buffer' definition 'ptr'.
libbind-6.0/irs/lcl_ho.c:204:18: style: The scope of the variable 'hp' can be reduced. [variableScope]
libbind-6.0/irs/lcl_ho.c:501:18: style: The scope of the variable 'hp' can be reduced. [variableScope]
libbind-6.0/irs/lcl_ho.c:118:10: style: union member 'align::al' is never used. [unusedStructMember]
libbind-6.0/irs/lcl_ho.c:119:7: style: union member 'align::ac' is never used. [unusedStructMember]
libbind-6.0/irs/lcl_ng.c:238:24: style: The scope of the variable 'olp' can be reduced. [variableScope]
libbind-6.0/irs/lcl_ng.c:239:29: style: The scope of the variable 'ogp' can be reduced. [variableScope]
libbind-6.0/irs/lcl_nw.c:314:2: error: Address of auto-variable 'pvt->net' returned [returnAddressOfAutoVariable]
libbind-6.0/irs/lcl_sv.c:280:3: error: Resource leak: fp [resourceLeak]
libbind-6.0/isc/base64.c:139:9: style: The scope of the variable 'i' can be reduced. [variableScope]
libbind-6.0/isc/ctl_srvr.c:724:7: style: The scope of the variable 'tmp' can be reduced. [variableScope]
libbind-6.0/isc/ev_connects.c:160:6: style: The scope of the variable 'mode' can be reduced. [variableScope]
libbind-6.0/isc/ev_connects.c:280:20: style: Function 'listener' argument 1 names different: declaration 'ctx' definition 'opaqueCtx'. [funcArgNamesDifferent]
libbind-6.0/isc/ev_connects.c:57:32: note: Function 'listener' argument 1 names different: declaration 'ctx' definition 'opaqueCtx'.
libbind-6.0/isc/ev_connects.c:280:20: note: Function 'listener' argument 1 names different: declaration 'ctx' definition 'opaqueCtx'.
libbind-6.0/isc/ev_connects.c:316:21: style: Function 'connector' argument 1 names different: declaration 'ctx' definition 'opaqueCtx'. [funcArgNamesDifferent]
libbind-6.0/isc/ev_connects.c:58:33: note: Function 'connector' argument 1 names different: declaration 'ctx' definition 'opaqueCtx'.
libbind-6.0/isc/ev_connects.c:316:21: note: Function 'connector' argument 1 names different: declaration 'ctx' definition 'opaqueCtx'.
libbind-6.0/isc/ev_connects.c:333:16: style: Unused variable: optlen [unusedVariable]
libbind-6.0/isc/ev_timers.c:462:2: style: Variable 'cur' is reassigned a value before the old one has been used. [redundantAssignment]
libbind-6.0/isc/ev_timers.c:459:0: note: Variable 'cur' is reassigned a value before the old one has been used.
libbind-6.0/isc/ev_timers.c:462:2: note: Variable 'cur' is reassigned a value before the old one has been used.
libbind-6.0/isc/heap.c:123:6: style: The scope of the variable 'j' can be reduced. [variableScope]
libbind-6.0/isc/heap.c:166:6: style: The scope of the variable 'less' can be reduced. [variableScope]
libbind-6.0/isc/logging.c:75:3: warning: %d in format string (no. 2) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
libbind-6.0/isc/logging.c:76:3: warning: %d in format string (no. 2) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
libbind-6.0/isc/logging.c:278:13: style: The scope of the variable 'local_tm' can be reduced. [variableScope]
libbind-6.0/isc/tree.c:418:10: style: The scope of the variable 'b2' can be reduced. [variableScope]
libbind-6.0/isc/tree.c:478:10: style: The scope of the variable 'b2' can be reduced. [variableScope]
libbind-6.0/nameser/ns_name.c:1037:13: style: Variable 'end_blen' is reassigned a value before the old one has been used. [redundantAssignment]
libbind-6.0/nameser/ns_name.c:1034:0: note: Variable 'end_blen' is reassigned a value before the old one has been used.
libbind-6.0/nameser/ns_name.c:1037:13: note: Variable 'end_blen' is reassigned a value before the old one has been used.
libbind-6.0/nameser/ns_name.c:103:6: style: The scope of the variable 'l' can be reduced. [variableScope]
libbind-6.0/nameser/ns_name.c:360:6: style: The scope of the variable 'l' can be reduced. [variableScope]
libbind-6.0/nameser/ns_name.c:1134:6: style: The scope of the variable 'bitlen' can be reduced. [variableScope]
libbind-6.0/nameser/ns_parse.c:84:10: style: The scope of the variable 'rdlength' can be reduced. [variableScope]
libbind-6.0/nameser/ns_print.c:639:9: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbind-6.0/nameser/ns_print.c:639:9: warning: %u in format string (no. 2) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbind-6.0/nameser/ns_print.c:639:9: warning: %u in format string (no. 3) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbind-6.0/nameser/ns_print.c:823:7: style: Same expression on both sides of '-='. [duplicateExpression]
libbind-6.0/nameser/ns_print.c:1047:6: style: The scope of the variable 'n' can be reduced. [variableScope]
libbind-6.0/nameser/ns_print.c:1048:8: style: The scope of the variable 'p' can be reduced. [variableScope]
libbind-6.0/nameser/ns_print.c:1225:6: style: The scope of the variable 't' can be reduced. [variableScope]
libbind-6.0/nameser/ns_print.c:1160:17: style: Function 'addname' argument 3 names different: declaration 'p' definition 'pp'. [funcArgNamesDifferent]
libbind-6.0/nameser/ns_print.c:54:19: note: Function 'addname' argument 3 names different: declaration 'p' definition 'pp'.
libbind-6.0/nameser/ns_print.c:1160:17: note: Function 'addname' argument 3 names different: declaration 'p' definition 'pp'.
libbind-6.0/nameser/ns_ttl.c:55:8: style: The scope of the variable 'p' can be reduced. [variableScope]
libbind-6.0/resolv/res_findzonecut.c:524:8: style: The scope of the variable 'tname' can be reduced. [variableScope]
libbind-6.0/resolv/res_findzonecut.c:525:17: style: The scope of the variable 'rdata' can be reduced. [variableScope]
libbind-6.0/resolv/res_init.c:175:6: style: The scope of the variable 'nsort' can be reduced. [variableScope]
libbind-6.0/resolv/res_init.c:176:8: style: The scope of the variable 'net' can be reduced. [variableScope]
libbind-6.0/resolv/res_init.c:178:6: style: The scope of the variable 'dots' can be reduced. [variableScope]
libbind-6.0/resolv/res_init.c:379:12: style: The scope of the variable 'sbuf' can be reduced. [variableScope]
libbind-6.0/resolv/res_mkupdate.c:85:6: style: The scope of the variable 'n' can be reduced. [variableScope]
libbind-6.0/resolv/res_mkupdate.c:91:6: style: The scope of the variable 'section' can be reduced. [variableScope]
libbind-6.0/resolv/res_mkupdate.c:574:17: style: The scope of the variable 'nxt_type' can be reduced. [variableScope]
libbind-6.0/resolv/res_mkupdate.c:723:13: style: The scope of the variable 'c' can be reduced. [variableScope]
libbind-6.0/resolv/res_mkupdate.c:830:13: style: The scope of the variable 'c' can be reduced. [variableScope]
libbind-6.0/resolv/res_mkupdate.c:878:13: style: The scope of the variable 'c' can be reduced. [variableScope]
libbind-6.0/resolv/res_mkupdate.c:1137:14: style: The scope of the variable 'number' can be reduced. [variableScope]
libbind-6.0/resolv/res_mkupdate.c:1152:14: style: The scope of the variable 'number' can be reduced. [variableScope]
libbind-6.0/resolv/res_query.c:367:9: style: The scope of the variable 'd' can be reduced. [variableScope]
libbind-6.0/resolv/res_query.c:125:1: style: Label 'again' is not used. [unusedLabel]
libbind-6.0/resolv/res_query.c:412:3: error: Resource leak: fp [resourceLeak]
libbind-6.0/resolv/res_send.c:1032:7: warning: Redundant assignment of 'alen' to itself. [selfAssignment]
libbind-6.0/resolv/res_send.c:163:34: style: The scope of the variable 'srv' can be reduced. [variableScope]
libbind-6.0/resolv/res_send.c:1029:7: style: The scope of the variable 'hbuf' can be reduced. [variableScope]
libbind-6.0/resolv/res_send.c:1030:7: style: The scope of the variable 'sbuf' can be reduced. [variableScope]
libbind-6.0/tests/dig8.c:813:8: style: The scope of the variable 'nscount' can be reduced. [variableScope]
libbind-6.0/tests/dig8.c:1287:14: style: The scope of the variable 'amtToRead' can be reduced. [variableScope]
libbind-6.0/tests/dig8.c:1290:10: style: The scope of the variable 'cp' can be reduced. [variableScope]
libbind-6.0/tests/dig8.c:1688:18: style: Function 'print_axfr' argument 1 names different: declaration 'output' definition 'file'. [funcArgNamesDifferent]
libbind-6.0/tests/dig8.c:269:30: note: Function 'print_axfr' argument 1 names different: declaration 'output' definition 'file'.
libbind-6.0/tests/dig8.c:1688:18: note: Function 'print_axfr' argument 1 names different: declaration 'output' definition 'file'.
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbind-config-parser-perl/libbind-config-parser-perl_0.01.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbind-confparser-perl/libbind-confparser-perl_0.95.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbinio/libbinio_1.4+dfsg1.orig.tar.gz
libbinio-1.4/src/binfile.cpp:118:7: style: The scope of the variable 'read' can be reduced. [variableScope]
libbinio-1.4/src/binfile.cpp:212:19: error: Modifying string literal "w+b" directly or indirectly is undefined behaviour. [stringLiteralWrite]
libbinio-1.4/src/binfile.cpp:218:7: note: Modifying string literal "w+b" directly or indirectly is undefined behaviour.
libbinio-1.4/src/binfile.cpp:212:19: note: Modifying string literal "w+b" directly or indirectly is undefined behaviour.
libbinio-1.4/src/binfile.cpp:212:19: error: Modifying string literal "w+b" directly or indirectly is undefined behaviour. [stringLiteralWrite]
libbinio-1.4/src/binfile.cpp:221:7: note: Modifying string literal "w+b" directly or indirectly is undefined behaviour.
libbinio-1.4/src/binfile.cpp:212:19: note: Modifying string literal "w+b" directly or indirectly is undefined behaviour.
libbinio-1.4/src/binfile.h:64:16: warning: Virtual function 'open' is called from constructor 'binifstream(const char*filename,const Mode mode=NoCreate)' at line 83. Dynamic binding is not used. [virtualCallInConstructor]
libbinio-1.4/src/binfile.cpp:83:3: note: Calling open
libbinio-1.4/src/binfile.h:64:16: note: open is a virtual method
libbinio-1.4/src/binfile.h:66:16: warning: Virtual function 'open' is called from constructor 'binifstream(const std::string&filename,const Mode mode=NoCreate)' at line 89. Dynamic binding is not used. [virtualCallInConstructor]
libbinio-1.4/src/binfile.cpp:89:3: note: Calling open
libbinio-1.4/src/binfile.h:66:16: note: open is a virtual method
libbinio-1.4/src/binfile.h:84:16: warning: Virtual function 'open' is called from constructor 'binofstream(const char*filename,const Mode mode=0)' at line 138. Dynamic binding is not used. [virtualCallInConstructor]
libbinio-1.4/src/binfile.cpp:138:3: note: Calling open
libbinio-1.4/src/binfile.h:84:16: note: open is a virtual method
libbinio-1.4/src/binfile.h:86:16: warning: Virtual function 'open' is called from constructor 'binofstream(const std::string&filename,const Mode mode=0)' at line 144. Dynamic binding is not used. [virtualCallInConstructor]
libbinio-1.4/src/binfile.cpp:144:3: note: Calling open
libbinio-1.4/src/binfile.h:86:16: note: open is a virtual method
libbinio-1.4/src/binfile.h:104:16: warning: Virtual function 'open' is called from constructor 'binfstream(const char*filename,const Mode mode=0)' at line 196. Dynamic binding is not used. [virtualCallInConstructor]
libbinio-1.4/src/binfile.cpp:196:3: note: Calling open
libbinio-1.4/src/binfile.h:104:16: note: open is a virtual method
libbinio-1.4/src/binfile.h:106:16: warning: Virtual function 'open' is called from constructor 'binfstream(const std::string&filename,const Mode mode=0)' at line 202. Dynamic binding is not used. [virtualCallInConstructor]
libbinio-1.4/src/binfile.cpp:202:3: note: Calling open
libbinio-1.4/src/binfile.h:106:16: note: open is a virtual method
libbinio-1.4/src/binfile.h:46:16: style: The function 'seek' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binio.h:95:16: note: Virtual function in base class
libbinio-1.4/src/binfile.h:46:16: note: Function in derived class
libbinio-1.4/src/binfile.h:47:16: style: The function 'pos' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binio.h:96:16: note: Virtual function in base class
libbinio-1.4/src/binfile.h:47:16: note: Function in derived class
libbinio-1.4/src/binfile.h:70:16: style: The function 'getByte' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binio.h:140:16: note: Virtual function in base class
libbinio-1.4/src/binfile.h:70:16: note: Function in derived class
libbinio-1.4/src/binfile.h:90:16: style: The function 'putByte' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binio.h:161:16: note: Virtual function in base class
libbinio-1.4/src/binfile.h:90:16: note: Function in derived class
libbinio-1.4/src/binfile.h:104:16: style: The function 'open' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binfile.h:64:16: note: Virtual function in base class
libbinio-1.4/src/binfile.h:104:16: note: Function in derived class
libbinio-1.4/src/binfile.h:106:16: style: The function 'open' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binfile.h:66:16: note: Virtual function in base class
libbinio-1.4/src/binfile.h:106:16: note: Function in derived class
libbinio-1.4/src/binio.cpp:65:15: portability: Casting from float* to char* is not portable due to different binary data representations on different platforms. [invalidPointerCast]
libbinio-1.4/src/binio.cpp:285:63: style: Function 'readString' argument 2 names different: declaration 'amount' definition 'maxlen'. [funcArgNamesDifferent]
libbinio-1.4/src/binio.h:127:53: note: Function 'readString' argument 2 names different: declaration 'amount' definition 'maxlen'.
libbinio-1.4/src/binio.cpp:285:63: note: Function 'readString' argument 2 names different: declaration 'amount' definition 'maxlen'.
libbinio-1.4/src/binio.cpp:490:42: style: Function 'float2ieee_single' argument 1 names different: declaration 'f' definition 'num'. [funcArgNamesDifferent]
libbinio-1.4/src/binio.h:164:32: note: Function 'float2ieee_single' argument 1 names different: declaration 'f' definition 'num'.
libbinio-1.4/src/binio.cpp:490:42: note: Function 'float2ieee_single' argument 1 names different: declaration 'f' definition 'num'.
libbinio-1.4/src/binio.cpp:490:53: style: Function 'float2ieee_single' argument 2 names different: declaration 'data' definition 'bytes'. [funcArgNamesDifferent]
libbinio-1.4/src/binio.h:164:41: note: Function 'float2ieee_single' argument 2 names different: declaration 'data' definition 'bytes'.
libbinio-1.4/src/binio.cpp:490:53: note: Function 'float2ieee_single' argument 2 names different: declaration 'data' definition 'bytes'.
libbinio-1.4/src/binio.cpp:548:42: style: Function 'float2ieee_double' argument 1 names different: declaration 'f' definition 'num'. [funcArgNamesDifferent]
libbinio-1.4/src/binio.h:165:32: note: Function 'float2ieee_double' argument 1 names different: declaration 'f' definition 'num'.
libbinio-1.4/src/binio.cpp:548:42: note: Function 'float2ieee_double' argument 1 names different: declaration 'f' definition 'num'.
libbinio-1.4/src/binio.cpp:548:53: style: Function 'float2ieee_double' argument 2 names different: declaration 'data' definition 'bytes'. [funcArgNamesDifferent]
libbinio-1.4/src/binio.h:165:41: note: Function 'float2ieee_double' argument 2 names different: declaration 'data' definition 'bytes'.
libbinio-1.4/src/binio.cpp:548:53: note: Function 'float2ieee_double' argument 2 names different: declaration 'data' definition 'bytes'.
libbinio-1.4/src/binio.h:90:8: style: Technically the member function 'binio::getFlag' can be const. [functionConst]
libbinio-1.4/src/binio.cpp:95:13: note: Technically the member function 'binio::getFlag' can be const.
libbinio-1.4/src/binio.h:90:8: note: Technically the member function 'binio::getFlag' can be const.
libbinio-1.4/src/binio.h:93:8: style: Technically the member function 'binio::eof' can be const. [functionConst]
libbinio-1.4/src/binio.cpp:108:13: note: Technically the member function 'binio::eof' can be const.
libbinio-1.4/src/binio.h:93:8: note: Technically the member function 'binio::eof' can be const.
libbinio-1.4/src/binio.cpp:97:24: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
libbinio-1.4/src/binio.cpp:110:21: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
libbinio-1.4/src/binio.cpp:192:34: style: Clarify calculation precedence for '>>' and '?'. [clarifyCalculation]
libbinio-1.4/src/binio.cpp:227:34: style: Clarify calculation precedence for '>>' and '?'. [clarifyCalculation]
libbinio-1.4/src/binstr.h:31:16: style: The function 'seek' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binio.h:95:16: note: Virtual function in base class
libbinio-1.4/src/binstr.h:31:16: note: Function in derived class
libbinio-1.4/src/binstr.h:32:16: style: The function 'pos' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binio.h:96:16: note: Virtual function in base class
libbinio-1.4/src/binstr.h:32:16: note: Function in derived class
libbinio-1.4/src/binstr.h:46:16: style: The function 'getByte' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binio.h:140:16: note: Virtual function in base class
libbinio-1.4/src/binstr.h:46:16: note: Function in derived class
libbinio-1.4/src/binstr.h:56:16: style: The function 'putByte' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binio.h:161:16: note: Virtual function in base class
libbinio-1.4/src/binstr.h:56:16: note: Function in derived class
libbinio-1.4/src/binwrap.h:44:3: style: Class 'biniwstream' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libbinio-1.4/src/binwrap.h:60:3: style: Class 'binowstream' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libbinio-1.4/src/binwrap.h:76:3: style: Class 'binwstream' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libbinio-1.4/src/binwrap.h:47:16: style: The function 'seek' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binio.h:95:16: note: Virtual function in base class
libbinio-1.4/src/binwrap.h:47:16: note: Function in derived class
libbinio-1.4/src/binwrap.h:48:16: style: The function 'pos' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binio.h:96:16: note: Virtual function in base class
libbinio-1.4/src/binwrap.h:48:16: note: Function in derived class
libbinio-1.4/src/binwrap.h:51:16: style: The function 'getByte' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binio.h:140:16: note: Virtual function in base class
libbinio-1.4/src/binwrap.h:51:16: note: Function in derived class
libbinio-1.4/src/binwrap.h:63:16: style: The function 'seek' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binio.h:95:16: note: Virtual function in base class
libbinio-1.4/src/binwrap.h:63:16: note: Function in derived class
libbinio-1.4/src/binwrap.h:64:16: style: The function 'pos' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binio.h:96:16: note: Virtual function in base class
libbinio-1.4/src/binwrap.h:64:16: note: Function in derived class
libbinio-1.4/src/binwrap.h:67:16: style: The function 'putByte' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binio.h:161:16: note: Virtual function in base class
libbinio-1.4/src/binwrap.h:67:16: note: Function in derived class
libbinio-1.4/src/binwrap.h:79:16: style: The function 'seek' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binwrap.h:47:16: note: Virtual function in base class
libbinio-1.4/src/binwrap.h:79:16: note: Function in derived class
libbinio-1.4/src/binwrap.h:80:16: style: The function 'pos' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binwrap.h:48:16: note: Virtual function in base class
libbinio-1.4/src/binwrap.h:80:16: note: Function in derived class
libbinio-1.4/src/binwrap.h:83:16: style: The function 'getByte' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binwrap.h:51:16: note: Virtual function in base class
libbinio-1.4/src/binwrap.h:83:16: note: Function in derived class
libbinio-1.4/src/binwrap.h:84:16: style: The function 'putByte' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbinio-1.4/src/binwrap.h:67:16: note: Virtual function in base class
libbinio-1.4/src/binwrap.h:84:16: note: Function in derived class
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbio-asn1-entrezgene-perl/libbio-asn1-entrezgene-perl_1.720.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbio-chado-schema-perl/libbio-chado-schema-perl_0.20000.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbio-coordinate-perl/libbio-coordinate-perl_1.7.1.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbio-das-lite-perl/libbio-das-lite-perl_2.11.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbio-eutilities-perl/libbio-eutilities-perl_1.75.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbio-graphics-perl/libbio-graphics-perl_2.40.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbio-mage-perl/libbio-mage-perl_20030502.3.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbio-mage-utils-perl/libbio-mage-utils-perl_20030502.0.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbio-primerdesigner-perl/libbio-primerdesigner-perl_0.07.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbio-samtools-perl/libbio-samtools-perl_1.43.orig.tar.gz
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbio-scf-perl/libbio-scf-perl_1.03.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbio-tools-phylo-paml-perl/libbio-tools-phylo-paml-perl_1.7.3.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbio-tools-run-alignment-clustalw-perl/libbio-tools-run-alignment-clustalw-perl_1.7.4.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbio-tools-run-alignment-tcoffee-perl/libbio-tools-run-alignment-tcoffee-perl_1.7.4.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbiod/libbiod_0.1.0.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbioparser-dev/libbioparser-dev_1.2.0.orig.tar.gz
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbit-vector-minimal-perl/libbit-vector-minimal-perl_1.3.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbit-vector-perl/libbit-vector-perl_7.4.orig.tar.gz
Bit-Vector-7.4/BitVector.c:417:12: style: The scope of the variable 'length' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:431:12: style: The scope of the variable 'length' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:444:13: style: The scope of the variable 'last' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:445:13: style: The scope of the variable 'temp' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:464:13: style: The scope of the variable 'digit' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:673:16: style: The scope of the variable 'slot' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:692:13: style: The scope of the variable 'zero' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:715:16: style: The scope of the variable 'slot' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:717:13: style: The scope of the variable 'i' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:742:13: style: The scope of the variable 'bytes' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:748:13: style: The scope of the variable 'source' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:749:13: style: The scope of the variable 'target' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:829:13: style: The scope of the variable 'fill' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:830:13: style: The scope of the variable 'lastX' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:831:13: style: The scope of the variable 'lastY' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:895:13: style: The scope of the variable 'work' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:896:13: style: The scope of the variable 'temp' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:897:13: style: The scope of the variable 'i' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:897:15: style: The scope of the variable 'j' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:924:12: style: The scope of the variable 'bit' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:925:12: style: The scope of the variable 'value' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:965:13: style: The scope of the variable 'loaddr' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:966:13: style: The scope of the variable 'hiaddr' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:967:13: style: The scope of the variable 'lobase' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:968:13: style: The scope of the variable 'hibase' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:969:13: style: The scope of the variable 'lomask' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:971:13: style: The scope of the variable 'diff' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1005:13: style: The scope of the variable 'loaddr' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1006:13: style: The scope of the variable 'hiaddr' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1007:13: style: The scope of the variable 'lobase' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1008:13: style: The scope of the variable 'hibase' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1009:13: style: The scope of the variable 'lomask' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1011:13: style: The scope of the variable 'diff' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1046:13: style: The scope of the variable 'loaddr' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1047:13: style: The scope of the variable 'hiaddr' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1048:13: style: The scope of the variable 'lobase' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1049:13: style: The scope of the variable 'hibase' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1050:13: style: The scope of the variable 'lomask' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1052:13: style: The scope of the variable 'diff' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1085:13: style: The scope of the variable 'loaddr' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1086:13: style: The scope of the variable 'hiaddr' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1272:13: style: The scope of the variable 'source' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1273:13: style: The scope of the variable 'target' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1274:13: style: The scope of the variable 's_lo_base' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1275:13: style: The scope of the variable 's_hi_base' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1276:13: style: The scope of the variable 's_lo_bit' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1277:13: style: The scope of the variable 's_hi_bit' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1278:13: style: The scope of the variable 's_base' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1279:13: style: The scope of the variable 's_lower' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1280:13: style: The scope of the variable 's_upper' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1281:13: style: The scope of the variable 's_bits' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1282:13: style: The scope of the variable 's_min' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1283:13: style: The scope of the variable 's_max' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1284:13: style: The scope of the variable 't_lo_base' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1285:13: style: The scope of the variable 't_hi_base' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1286:13: style: The scope of the variable 't_lo_bit' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1287:13: style: The scope of the variable 't_hi_bit' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1288:13: style: The scope of the variable 't_base' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1289:13: style: The scope of the variable 't_lower' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1290:13: style: The scope of the variable 't_upper' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1291:13: style: The scope of the variable 't_bits' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1292:13: style: The scope of the variable 't_min' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1294:13: style: The scope of the variable 'bits' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1295:13: style: The scope of the variable 'select' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1296:13: style: The scope of the variable 'ascending' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1297:13: style: The scope of the variable 'notfirst' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1487:12: style: The scope of the variable 'limit' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1488:12: style: The scope of the variable 'diff' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1584:13: style: The scope of the variable 'last' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1621:13: style: The scope of the variable 'r' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1649:13: style: The scope of the variable 'sign' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1650:13: style: The scope of the variable 'r' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1681:13: style: The scope of the variable 'value' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1682:13: style: The scope of the variable 'count' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1683:13: style: The scope of the variable 'digit' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1718:13: style: The scope of the variable 'length' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1719:13: style: The scope of the variable 'value' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1720:13: style: The scope of the variable 'count' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1721:13: style: The scope of the variable 'digit' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1753:13: style: The scope of the variable 'value' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1754:13: style: The scope of the variable 'count' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1755:13: style: The scope of the variable 'digit' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1789:13: style: The scope of the variable 'length' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1790:13: style: The scope of the variable 'value' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1791:13: style: The scope of the variable 'count' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1792:13: style: The scope of the variable 'digit' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1829:13: style: The scope of the variable 'count' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1830:13: style: The scope of the variable 'q' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1831:13: style: The scope of the variable 'r' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1832:13: style: The scope of the variable 'loop' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1835:13: style: The scope of the variable 'quot' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1836:13: style: The scope of the variable 'rest' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1837:13: style: The scope of the variable 'temp' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1838:13: style: The scope of the variable 'base' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1944:16: style: The scope of the variable 'minus' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1945:16: style: The scope of the variable 'shift' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1947:16: style: The scope of the variable 'term' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1948:16: style: The scope of the variable 'base' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1949:16: style: The scope of the variable 'prod' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1950:16: style: The scope of the variable 'rank' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1951:16: style: The scope of the variable 'temp' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1952:16: style: The scope of the variable 'accu' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1953:16: style: The scope of the variable 'powr' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1954:16: style: The scope of the variable 'count' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1955:16: style: The scope of the variable 'length' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:1956:16: style: The scope of the variable 'digit' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2081:13: style: The scope of the variable 'sample' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2083:13: style: The scope of the variable 'digits' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2084:13: style: The scope of the variable 'factor' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2085:13: style: The scope of the variable 'power' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2153:16: style: The scope of the variable 'state' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2154:16: style: The scope of the variable 'start' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2155:16: style: The scope of the variable 'token' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2332:13: style: The scope of the variable 'carry_in' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2359:13: style: The scope of the variable 'msb' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2360:13: style: The scope of the variable 'carry_in' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2417:13: style: The scope of the variable 'msb' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2445:12: style: The scope of the variable 'count' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2446:12: style: The scope of the variable 'words' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2463:12: style: The scope of the variable 'count' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2464:12: style: The scope of the variable 'words' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2482:12: style: The scope of the variable 'last' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2499:12: style: The scope of the variable 'last' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2557:12: style: The scope of the variable 'cc' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2559:12: style: The scope of the variable 'yy' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2560:12: style: The scope of the variable 'zz' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2561:12: style: The scope of the variable 'lo' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2562:12: style: The scope of the variable 'hi' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2651:13: style: The scope of the variable 'carry' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2760:16: style: The scope of the variable 'size' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2761:16: style: The scope of the variable 'mask' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2763:16: style: The scope of the variable 'ptr_y' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2764:16: style: The scope of the variable 'ptr_z' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2765:16: style: The scope of the variable 'sgn_x' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2766:16: style: The scope of the variable 'sgn_y' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2767:16: style: The scope of the variable 'sgn_z' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2768:16: style: The scope of the variable 'zero' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2838:13: style: The scope of the variable 'addr' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2899:16: style: The scope of the variable 'sgn_q' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2900:16: style: The scope of the variable 'sgn_x' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2901:16: style: The scope of the variable 'sgn_y' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2902:16: style: The scope of the variable 'A' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:2903:16: style: The scope of the variable 'B' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3052:16: style: The scope of the variable 'minus' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3054:16: style: The scope of the variable 'sgn_q' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3055:16: style: The scope of the variable 'sgn_r' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3273:13: style: The scope of the variable 'value' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3274:13: style: The scope of the variable 'count' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3295:13: style: The scope of the variable 'value' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3296:13: style: The scope of the variable 'count' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3382:12: style: The scope of the variable 'mask' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3383:12: style: The scope of the variable 'temp' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3415:12: style: The scope of the variable 'chunkbits' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3417:12: style: The scope of the variable 'temp' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3553:13: style: The scope of the variable 'w0' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3553:16: style: The scope of the variable 'w1' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3554:15: style: The scope of the variable 'k' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3577:13: style: The scope of the variable 'c' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3642:12: style: The scope of the variable 'i' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3643:12: style: The scope of the variable 'j' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3644:12: style: The scope of the variable 'k' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3645:12: style: The scope of the variable 'indxX' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3646:12: style: The scope of the variable 'indxY' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3647:12: style: The scope of the variable 'indxZ' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3648:12: style: The scope of the variable 'termX' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3649:12: style: The scope of the variable 'termY' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3650:12: style: The scope of the variable 'sum' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3683:12: style: The scope of the variable 'i' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3684:12: style: The scope of the variable 'j' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3685:12: style: The scope of the variable 'k' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3686:12: style: The scope of the variable 'indxX' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3687:12: style: The scope of the variable 'indxY' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3688:12: style: The scope of the variable 'indxZ' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3689:12: style: The scope of the variable 'termX' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3690:12: style: The scope of the variable 'termY' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3691:12: style: The scope of the variable 'sum' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3722:12: style: The scope of the variable 'i' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3723:12: style: The scope of the variable 'j' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3724:12: style: The scope of the variable 'k' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3725:12: style: The scope of the variable 'ii' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3726:12: style: The scope of the variable 'ij' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3727:12: style: The scope of the variable 'ik' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3728:12: style: The scope of the variable 'kj' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3729:12: style: The scope of the variable 'termi' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3730:12: style: The scope of the variable 'termk' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3762:13: style: The scope of the variable 'i' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3763:13: style: The scope of the variable 'j' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3764:13: style: The scope of the variable 'ii' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3765:13: style: The scope of the variable 'ij' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3766:13: style: The scope of the variable 'ji' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3767:13: style: The scope of the variable 'addii' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3768:13: style: The scope of the variable 'addij' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3769:13: style: The scope of the variable 'addji' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3773:13: style: The scope of the variable 'termi' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3774:13: style: The scope of the variable 'termj' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:3775:13: style: The scope of the variable 'swap' can be reduced. [variableScope]
Bit-Vector-7.4/BitVector.c:626:37: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
Bit-Vector-7.4/BitVector.c:981:34: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
Bit-Vector-7.4/BitVector.c:982:34: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
Bit-Vector-7.4/BitVector.c:1021:34: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
Bit-Vector-7.4/BitVector.c:1022:34: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
Bit-Vector-7.4/BitVector.c:1062:34: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
Bit-Vector-7.4/BitVector.c:1063:34: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
Bit-Vector-7.4/BitVector.c:1367:46: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
Bit-Vector-7.4/BitVector.c:1374:47: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
Bit-Vector-7.4/BitVector.c:1381:46: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
Bit-Vector-7.4/BitVector.c:1382:49: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
Bit-Vector-7.4/BitVector.c:1455:34: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
Bit-Vector-7.4/BitVector.c:1456:37: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
Bit-Vector-7.4/BitVector.c:3393:34: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
Bit-Vector-7.4/BitVector.c:3397:40: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
Bit-Vector-7.4/BitVector.c:3431:39: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbitcoin/libbitcoin_2.11.0.orig.tar.gz
libbitcoin-2.11.0/archive/oldtests/bdb-test.cpp:187:17: style: Variable 'stop_inserts' is assigned a value that is never used. [unreadVariable]
libbitcoin-2.11.0/archive/oldtests/blockchain.cpp:39:5: style: Class 'override_delete' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libbitcoin-2.11.0/archive/oldtests/blockchain.cpp:113:63: performance: Function parameter 'prev_name' should be passed by const reference. [passedByValue]
libbitcoin-2.11.0/archive/oldtests/corot.cpp:29:5: style: Class 'fetch_block_t' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:44:1: style: The class 'crap_menu' does not have a constructor although it has private member variables. [noConstructor]
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:427:14: style: Member variable 'crap_app::session_' is in the wrong place in the initializer list. [initializerList]
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:268:23: note: Member variable 'crap_app::session_' is in the wrong place in the initializer list.
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:427:14: note: Member variable 'crap_app::session_' is in the wrong place in the initializer list.
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:130:12: performance: Technically the member function 'crap_menu::build_output_script' can be static. [functionStatic]
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:246:9: performance: Technically the member function 'crap_menu::get_option' can be static. [functionStatic]
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:252:14: performance: Technically the member function 'crap_menu::pretty_amount' can be static. [functionStatic]
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:403:10: performance: Technically the member function 'crap_app::handle_outputs' can be static. [functionStatic]
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:413:10: performance: Technically the member function 'crap_app::extract_value' can be static. [functionStatic]
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:316:23: style: The function 'bitcoin_address' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:238:31: note: Virtual function in base class
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:316:23: note: Function in derived class
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:338:17: style: The function 'raw_tx_hex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:240:25: note: Virtual function in base class
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:338:17: note: Function in derived class
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:346:17: style: The function 'pretty_tx' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:241:25: note: Virtual function in base class
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:346:17: note: Function in derived class
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:353:10: style: The function 'do_broadcast' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:242:18: note: Virtual function in base class
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:353:10: note: Function in derived class
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:366:16: style: The function 'get_public_key' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:243:24: note: Virtual function in base class
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:366:16: note: Function in derived class
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:371:10: style: The function 'sign_and_store' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:244:18: note: Virtual function in base class
libbitcoin-2.11.0/archive/oldtests/crap/main.cpp:371:10: note: Function in derived class
libbitcoin-2.11.0/archive/oldtests/echo.cpp:78:10: performance: Technically the member function 'echo_app::handle_receive_tx' can be static. [functionStatic]
libbitcoin-2.11.0/archive/oldtests/irc.cpp:23:59: performance: Function parameter 'hostname' should be passed by const reference. [passedByValue]
libbitcoin-2.11.0/archive/oldtests/logtst.cpp:26:22: style: The scope of the variable 'domain_spaces' can be reduced. [variableScope]
libbitcoin-2.11.0/archive/oldtests/script-test.cpp:81:22: style: Variable 'index' is assigned a value that is never used. [unreadVariable]
libbitcoin-2.11.0/archive/oldtests/subscribe.cpp:33:5: style: Struct 'abc' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libbitcoin-2.11.0/archive/oldtests/tx-hash.cpp:89:5: style: Statements following return, break, continue, goto or throw will never be executed. [unreachableCode]
libbitcoin-2.11.0/src/config/authority.cpp:48:48: performance: Inefficient usage of string::find() in condition; string::compare() would be faster. [stlIfStrFind]
libbitcoin-2.11.0/src/config/printer.cpp:307:23: style: Unused variable: output [unusedVariable]
libbitcoin-2.11.0/src/formats/base64.cpp:95:13: warning: Either the condition 'length>0' is redundant, otherwise there is negative array index -1. [negativeContainerIndex]
libbitcoin-2.11.0/src/formats/base64.cpp:91:16: note: Assuming that condition 'length>0' is not redundant
libbitcoin-2.11.0/src/formats/base64.cpp:95:13: note: Negative array index
libbitcoin-2.11.0/src/formats/base85.cpp:140:49: warning: Either the condition 'position>96' is redundant or the array 'decoder[96]' is accessed at index 96, which is out of bounds. [arrayIndexOutOfBoundsCond]
libbitcoin-2.11.0/src/formats/base85.cpp:137:38: note: Assuming that condition 'position>96' is not redundant
libbitcoin-2.11.0/src/formats/base85.cpp:140:49: note: Array index out of bounds
libbitcoin-2.11.0/src/math/external/lax_der_parsing.c:115:12: style: Variable 'pos' is modified but its new value is never used. [unreadVariable]
libbitcoin-2.11.0/src/math/external/pkcs5_pbkdf2.c:32:37: style: The scope of the variable 'length' can be reduced. [variableScope]
libbitcoin-2.11.0/src/math/uint256.cpp:182:34: error: Shifting signed 32-bit value by 31 bits is undefined behaviour [shiftTooManyBitsSigned]
libbitcoin-2.11.0/src/network/protocol.cpp:559:5: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libbitcoin-2.11.0/src/network/protocol.cpp:590:5: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libbitcoin-2.11.0/src/wallet/address.cpp:82:26: style: Same expression on both sides of '<'. [duplicateExpression]
libbitcoin-2.11.0/test/authority.cpp:208:17: style: Variable 'expected_ip' is assigned a value that is never used. [unreadVariable]
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbitmask/libbitmask_2.0.orig.tar.bz2

ftp://ftp.se.debian.org/debian/pool/main/libb/libblkmaker/libblkmaker_0.5.3.orig.tar.gz
libblkmaker-0.5.3/blkmaker.c:472:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libblkmaker-0.5.3/blkmaker.c:410:151: style: Function 'blkmk_get_mdata' argument 6 names different: declaration 'out_cbtxn' definition '_out_cbtxn'. [funcArgNamesDifferent]
libblkmaker-0.5.3/blkmaker.h:26:114: note: Function 'blkmk_get_mdata' argument 6 names different: declaration 'out_cbtxn' definition '_out_cbtxn'.
libblkmaker-0.5.3/blkmaker.c:410:151: note: Function 'blkmk_get_mdata' argument 6 names different: declaration 'out_cbtxn' definition '_out_cbtxn'.
libblkmaker-0.5.3/blkmaker.c:410:268: style: Function 'blkmk_get_mdata' argument 10 names different: declaration 'out_branches' definition '_out_branches'. [funcArgNamesDifferent]
libblkmaker-0.5.3/blkmaker.h:26:202: note: Function 'blkmk_get_mdata' argument 10 names different: declaration 'out_branches' definition '_out_branches'.
libblkmaker-0.5.3/blkmaker.c:410:268: note: Function 'blkmk_get_mdata' argument 10 names different: declaration 'out_branches' definition '_out_branches'.
libblkmaker-0.5.3/blkmaker_jansson.c:22:0: error: #error "Jansson 2.0 with long long support required!" [preprocessorErrorDirective]
libblkmaker-0.5.3/example.c:39:13: warning: Assert statement modifies 'rv'. [assignmentInAssert]
libblkmaker-0.5.3/example.c:41:13: warning: Assert statement modifies 'rv'. [assignmentInAssert]
libblkmaker-0.5.3/example.c:43:13: warning: Assert statement modifies 'rv'. [assignmentInAssert]
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libblockdev/libblockdev_2.16.orig.tar.gz
libblockdev-2.16-1/src/plugins/btrfs.c:200:5: style: Variable 'item' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/btrfs.c:196:0: note: Variable 'item' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/btrfs.c:200:5: note: Variable 'item' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/btrfs.c:239:5: style: Variable 'item' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/btrfs.c:237:0: note: Variable 'item' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/btrfs.c:239:5: note: Variable 'item' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/btrfs.c:261:5: style: Variable 'item' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/btrfs.c:254:0: note: Variable 'item' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/btrfs.c:261:5: note: Variable 'item' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:299:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/crypto.c:297:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:299:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:464:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/crypto.c:462:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:464:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:571:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/crypto.c:569:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:571:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:616:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/crypto.c:614:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:616:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:735:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/crypto.c:733:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:735:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:839:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/crypto.c:837:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:839:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:929:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/crypto.c:927:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:929:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:975:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/crypto.c:972:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:975:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:1036:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/crypto.c:1034:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:1036:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:1102:5: style: Variable 'packet_data' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/crypto.c:1095:0: note: Variable 'packet_data' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:1102:5: note: Variable 'packet_data' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:1179:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/crypto.c:1178:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:1179:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/crypto.c:923:46: style: Function 'bd_crypto_luks_resize' argument 1 names different: declaration 'device' definition 'luks_device'. [funcArgNamesDifferent]
libblockdev-2.16-1/src/plugins/crypto.h:81:46: note: Function 'bd_crypto_luks_resize' argument 1 names different: declaration 'device' definition 'luks_device'.
libblockdev-2.16-1/src/plugins/crypto.c:923:46: note: Function 'bd_crypto_luks_resize' argument 1 names different: declaration 'device' definition 'luks_device'.
libblockdev-2.16-1/src/plugins/dm.c:255:5: style: Variable 'dev_path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/dm.c:251:0: note: Variable 'dev_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:255:5: note: Variable 'dev_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:281:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/dm.c:278:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:281:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:445:5: style: Variable 'dev_name' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/dm.c:436:0: note: Variable 'dev_name' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:445:5: note: Variable 'dev_name' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:527:5: style: Variable 'lc' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/dm.c:522:0: note: Variable 'lc' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:527:5: note: Variable 'lc' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:559:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/dm.c:557:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:559:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:589:5: style: Variable 'lc' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/dm.c:585:0: note: Variable 'lc' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:589:5: note: Variable 'lc' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:633:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/dm.c:630:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:633:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:636:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/dm.c:631:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:636:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:655:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/dm.c:652:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:655:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:658:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/dm.c:653:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:658:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:678:5: style: Variable 'lc' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/dm.c:673:0: note: Variable 'lc' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:678:5: note: Variable 'lc' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/dm.c:331:31: portability: '(void*)names' is of type 'void *'. When using void pointers in calculations, the behaviour is undefined. [arithOperationsOnVoidPointer]
libblockdev-2.16-1/src/plugins/fs/common.c:85:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/common.c:81:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/common.c:85:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/common.c:89:5: style: Variable 'probe' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/common.c:75:0: note: Variable 'probe' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/common.c:89:5: note: Variable 'probe' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/ext.c:522:5: style: Variable 'table' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/ext.c:517:0: note: Variable 'table' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/ext.c:522:5: note: Variable 'table' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/ext.c:525:5: style: Variable 'items' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/ext.c:518:0: note: Variable 'items' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/ext.c:525:5: note: Variable 'items' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/generic.c:104:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/generic.c:101:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/generic.c:104:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/generic.c:108:5: style: Variable 'probe' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/generic.c:97:0: note: Variable 'probe' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/generic.c:108:5: note: Variable 'probe' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/generic.c:222:3: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/generic.c:220:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/generic.c:222:3: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/generic.c:259:5: style: Variable 'probe' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/generic.c:251:0: note: Variable 'probe' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/generic.c:259:5: note: Variable 'probe' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:132:5: style: Variable 'cxt' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/mount.c:129:0: note: Variable 'cxt' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:132:5: note: Variable 'cxt' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:345:5: style: Variable 'cxt' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/mount.c:341:0: note: Variable 'cxt' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:345:5: note: Variable 'cxt' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:444:5: style: Variable 'current_uid' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/mount.c:433:0: note: Variable 'current_uid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:444:5: note: Variable 'current_uid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:445:5: style: Variable 'current_gid' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/mount.c:434:0: note: Variable 'current_gid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:445:5: note: Variable 'current_gid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:578:5: style: Variable 'current_uid' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/mount.c:569:0: note: Variable 'current_uid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:578:5: note: Variable 'current_uid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:579:5: style: Variable 'run_as_uid' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/mount.c:567:0: note: Variable 'run_as_uid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:579:5: note: Variable 'run_as_uid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:581:5: style: Variable 'current_gid' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/mount.c:570:0: note: Variable 'current_gid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:581:5: note: Variable 'current_gid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:582:5: style: Variable 'run_as_gid' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/mount.c:568:0: note: Variable 'run_as_gid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:582:5: note: Variable 'run_as_gid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:652:5: style: Variable 'current_uid' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/mount.c:642:0: note: Variable 'current_uid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:652:5: note: Variable 'current_uid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:653:5: style: Variable 'run_as_uid' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/mount.c:640:0: note: Variable 'run_as_uid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:653:5: note: Variable 'run_as_uid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:655:5: style: Variable 'current_gid' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/mount.c:643:0: note: Variable 'current_gid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:655:5: note: Variable 'current_gid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:656:5: style: Variable 'run_as_gid' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/mount.c:641:0: note: Variable 'run_as_gid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:656:5: note: Variable 'run_as_gid' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:716:5: style: Variable 'table' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/mount.c:709:0: note: Variable 'table' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:716:5: note: Variable 'table' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:717:5: style: Variable 'cache' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/mount.c:711:0: note: Variable 'cache' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:717:5: note: Variable 'cache' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/mount.c:53:9: style: The scope of the variable 'syscall_errno' can be reduced. [variableScope]
libblockdev-2.16-1/src/plugins/fs/mount.c:176:9: style: The scope of the variable 'syscall_errno' can be reduced. [variableScope]
libblockdev-2.16-1/src/plugins/fs/vfat.c:114:5: style: Variable 'error_msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/vfat.c:113:0: note: Variable 'error_msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/vfat.c:114:5: note: Variable 'error_msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/vfat.c:388:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/vfat.c:386:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/vfat.c:388:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/vfat.c:392:5: style: Variable 'ped_dev' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/fs/vfat.c:378:0: note: Variable 'ped_dev' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/fs/vfat.c:392:5: note: Variable 'ped_dev' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:75:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:71:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:75:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:233:5: style: Variable 'opts' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:224:0: note: Variable 'opts' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:233:5: note: Variable 'opts' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:234:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:225:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:234:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:313:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:309:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:313:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:326:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:323:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:326:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:419:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:417:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:419:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:449:5: style: Variable 'path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:447:0: note: Variable 'path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:449:5: note: Variable 'path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:530:5: style: Variable 'path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:525:0: note: Variable 'path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:530:5: note: Variable 'path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:531:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:526:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:531:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:838:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:836:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:838:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:879:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:875:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:879:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:968:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:966:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:968:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:1137:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:1135:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:1137:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:1181:5: style: Variable 'path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:1174:0: note: Variable 'path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:1181:5: note: Variable 'path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:1242:5: style: Variable 'path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:1238:0: note: Variable 'path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:1242:5: note: Variable 'path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:1243:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:1236:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:1243:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:1405:5: style: Variable 'path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:1401:0: note: Variable 'path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:1405:5: note: Variable 'path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:1406:5: style: Variable 'link' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/kbd.c:1402:0: note: Variable 'link' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/kbd.c:1406:5: note: Variable 'link' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/loop.c:202:5: style: Variable 'fd' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/loop.c:197:0: note: Variable 'fd' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/loop.c:202:5: note: Variable 'fd' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/loop.c:238:5: style: Variable 'loop_control_fd' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/loop.c:229:0: note: Variable 'loop_control_fd' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/loop.c:238:5: note: Variable 'loop_control_fd' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:194:5: style: Variable 'addr' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:192:0: note: Variable 'addr' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:194:5: note: Variable 'addr' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:402:5: style: Variable 'intro_v' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:394:0: note: Variable 'intro_v' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:402:5: note: Variable 'intro_v' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:432:5: style: Variable 'args' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:428:0: note: Variable 'args' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:432:5: note: Variable 'args' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:434:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:429:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:434:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:460:5: style: Variable 'args' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:456:0: note: Variable 'args' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:460:5: note: Variable 'args' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:463:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:457:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:463:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:481:5: style: Variable 'obj_path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:478:0: note: Variable 'obj_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:481:5: note: Variable 'obj_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:609:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:600:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:609:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:761:5: style: Variable 'lv_spec' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:758:0: note: Variable 'lv_spec' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:761:5: note: Variable 'lv_spec' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:763:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:759:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:763:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:774:5: style: Variable 'args' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:770:0: note: Variable 'args' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:774:5: note: Variable 'args' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:777:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:771:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:777:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:796:5: style: Variable 'args' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:792:0: note: Variable 'args' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:796:5: note: Variable 'args' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:798:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:793:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:798:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:834:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:832:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:834:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:843:5: style: Variable 'lvm_spec' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:840:0: note: Variable 'lvm_spec' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:843:5: note: Variable 'lvm_spec' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:845:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:841:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:845:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:937:5: style: Variable 'value' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:918:0: note: Variable 'value' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:937:5: note: Variable 'value' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:999:5: style: Variable 'str' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:997:0: note: Variable 'str' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:999:5: note: Variable 'str' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1346:5: style: Variable 'src_path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1338:0: note: Variable 'src_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1346:5: note: Variable 'src_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1451:5: style: Variable 'props' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1448:0: note: Variable 'props' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1451:5: note: Variable 'props' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1477:5: style: Variable 'objects' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1471:0: note: Variable 'objects' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1477:5: note: Variable 'objects' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1651:5: style: Variable 'pv' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1646:0: note: Variable 'pv' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1651:5: note: Variable 'pv' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1735:5: style: Variable 'props' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1732:0: note: Variable 'props' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1735:5: note: Variable 'props' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1761:5: style: Variable 'objects' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1755:0: note: Variable 'objects' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1761:5: note: Variable 'objects' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1813:5: style: Variable 'prop' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1809:0: note: Variable 'prop' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1813:5: note: Variable 'prop' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1952:5: style: Variable 'params' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1950:0: note: Variable 'params' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1952:5: note: Variable 'params' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1977:5: style: Variable 'type' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1972:0: note: Variable 'type' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1977:5: note: Variable 'type' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1980:5: style: Variable 'params' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1973:0: note: Variable 'params' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:1980:5: note: Variable 'params' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2056:5: style: Variable 'params' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2051:0: note: Variable 'params' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2056:5: note: Variable 'params' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2081:5: style: Variable 'obj_id' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2077:0: note: Variable 'obj_id' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2081:5: note: Variable 'obj_id' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2082:5: style: Variable 'obj_path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2078:0: note: Variable 'obj_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2082:5: note: Variable 'obj_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2106:5: style: Variable 'props' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2103:0: note: Variable 'props' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2106:5: note: Variable 'props' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2126:5: style: Variable 'value' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2122:0: note: Variable 'value' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2126:5: note: Variable 'value' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2198:5: style: Variable 'lvs' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2189:0: note: Variable 'lvs' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2198:5: note: Variable 'lvs' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2308:5: style: Variable 'params' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2300:0: note: Variable 'params' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2308:5: note: Variable 'params' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2351:5: style: Variable 'params' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2346:0: note: Variable 'params' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2351:5: note: Variable 'params' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2376:5: style: Variable 'prop' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2371:0: note: Variable 'prop' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2376:5: note: Variable 'prop' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2424:5: style: Variable 'params' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2418:0: note: Variable 'params' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2424:5: note: Variable 'params' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2479:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2476:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2479:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2611:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2608:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2611:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2616:5: style: Variable 'type' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2600:0: note: Variable 'type' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2616:5: note: Variable 'type' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2617:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2599:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2617:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2713:5: style: Variable 'lv_id' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2710:0: note: Variable 'lv_id' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2713:5: note: Variable 'lv_id' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2714:5: style: Variable 'lv_obj_path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2711:0: note: Variable 'lv_obj_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2714:5: note: Variable 'lv_obj_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2752:5: style: Variable 'params' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2748:0: note: Variable 'params' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2752:5: note: Variable 'params' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2755:5: style: Variable 'cache_pool_name' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2746:0: note: Variable 'cache_pool_name' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2755:5: note: Variable 'cache_pool_name' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2788:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2785:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2788:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2792:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2783:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2792:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2847:5: style: Variable 'lv_spec' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2842:0: note: Variable 'lv_spec' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2847:5: note: Variable 'lv_spec' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2848:5: style: Variable 'prop' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2843:0: note: Variable 'prop' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:2848:5: note: Variable 'prop' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3016:5: style: Variable 'obj_id' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3012:0: note: Variable 'obj_id' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3016:5: note: Variable 'obj_id' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3017:5: style: Variable 'obj_path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3013:0: note: Variable 'obj_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3017:5: note: Variable 'obj_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3067:5: style: Variable 'obj_id' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3063:0: note: Variable 'obj_id' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3067:5: note: Variable 'obj_id' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3068:5: style: Variable 'obj_path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3064:0: note: Variable 'obj_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3068:5: note: Variable 'obj_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3126:5: style: Variable 'obj_id' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3122:0: note: Variable 'obj_id' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3126:5: note: Variable 'obj_id' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3127:5: style: Variable 'data_lv_path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3123:0: note: Variable 'data_lv_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3127:5: note: Variable 'data_lv_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3176:5: style: Variable 'obj_id' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3172:0: note: Variable 'obj_id' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3176:5: note: Variable 'obj_id' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3177:5: style: Variable 'data_lv_path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3173:0: note: Variable 'data_lv_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm-dbus.c:3177:5: note: Variable 'data_lv_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:333:5: style: Variable 'table' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:328:0: note: Variable 'table' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:333:5: note: Variable 'table' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:336:5: style: Variable 'items' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:329:0: note: Variable 'items' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:336:5: note: Variable 'items' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:359:5: style: Variable 'value' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:354:0: note: Variable 'value' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:359:5: note: Variable 'value' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:429:5: style: Variable 'value' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:424:0: note: Variable 'value' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:429:5: note: Variable 'value' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:479:5: style: Variable 'value' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:473:0: note: Variable 'value' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:479:5: note: Variable 'value' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:838:5: style: Variable 'num_start' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:834:0: note: Variable 'num_start' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:838:5: note: Variable 'num_start' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:925:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:919:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:925:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:975:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:965:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:975:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1201:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:1195:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1201:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1249:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:1239:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1249:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1314:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:1309:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1314:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1353:5: style: Variable 'size_str' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:1346:0: note: Variable 'size_str' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1353:5: note: Variable 'size_str' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1453:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:1448:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1453:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1508:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:1504:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1508:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1536:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:1531:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1536:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1561:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:1557:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1561:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1593:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:1585:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1593:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1794:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:1789:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1794:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1879:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:1876:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:1879:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2006:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:2002:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2006:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2011:5: style: Variable 'type' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:2000:0: note: Variable 'type' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2011:5: note: Variable 'type' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2012:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:1999:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2012:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2087:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:2083:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2087:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2147:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:2144:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2147:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2151:5: style: Variable 'name' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:2143:0: note: Variable 'name' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2151:5: note: Variable 'name' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2152:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:2142:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2152:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2203:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:2197:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2203:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2364:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:2358:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2364:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2394:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:2388:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2394:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2431:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:2427:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2431:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2464:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/lvm.c:2460:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/lvm.c:2464:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:296:31: warning: Either the condition 'if(value&&first_space)' is redundant or there is possible null pointer dereference: value. [nullPointerRedundantCheck]
libblockdev-2.16-1/src/plugins/mdraid.c:299:12: note: Assuming that condition 'if(value&&first_space)' is not redundant
libblockdev-2.16-1/src/plugins/mdraid.c:296:31: note: Null pointer dereference
libblockdev-2.16-1/src/plugins/mdraid.c:378:31: warning: Either the condition 'if(value&&first_space)' is redundant or there is possible null pointer dereference: value. [nullPointerRedundantCheck]
libblockdev-2.16-1/src/plugins/mdraid.c:381:12: note: Assuming that condition 'if(value&&first_space)' is not redundant
libblockdev-2.16-1/src/plugins/mdraid.c:378:31: note: Null pointer dereference
libblockdev-2.16-1/src/plugins/mdraid.c:389:31: warning: Either the condition 'if(value&&first_space)' is redundant or there is possible null pointer dereference: value. [nullPointerRedundantCheck]
libblockdev-2.16-1/src/plugins/mdraid.c:392:12: note: Assuming that condition 'if(value&&first_space)' is not redundant
libblockdev-2.16-1/src/plugins/mdraid.c:389:31: note: Null pointer dereference
libblockdev-2.16-1/src/plugins/mdraid.c:232:5: style: Variable 'table' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/mdraid.c:226:0: note: Variable 'table' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:232:5: note: Variable 'table' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:235:5: style: Variable 'items' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/mdraid.c:227:0: note: Variable 'items' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:235:5: note: Variable 'items' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:367:5: style: Variable 'name_str' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/mdraid.c:359:0: note: Variable 'name_str' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:367:5: note: Variable 'name_str' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:1126:5: style: Variable 'regex' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/mdraid.c:1124:0: note: Variable 'regex' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:1126:5: note: Variable 'regex' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:1201:5: style: Variable 'regex' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/mdraid.c:1199:0: note: Variable 'regex' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:1201:5: note: Variable 'regex' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:1268:5: style: Variable 'dev_path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/mdraid.c:1264:0: note: Variable 'dev_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:1268:5: note: Variable 'dev_path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:1342:5: style: Variable 'raid_node' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/mdraid.c:1339:0: note: Variable 'raid_node' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:1342:5: note: Variable 'raid_node' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:1418:5: style: Variable 'raid_node' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/mdraid.c:1413:0: note: Variable 'raid_node' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:1418:5: note: Variable 'raid_node' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mdraid.c:268:10: style: The scope of the variable 'time_str' can be reduced. [variableScope]
libblockdev-2.16-1/src/plugins/mdraid.c:563:37: style: Function 'bd_md_create' argument 1 names different: declaration 'raid_spec' definition 'device_name'. [funcArgNamesDifferent]
libblockdev-2.16-1/src/plugins/mdraid.h:91:37: note: Function 'bd_md_create' argument 1 names different: declaration 'raid_spec' definition 'device_name'.
libblockdev-2.16-1/src/plugins/mdraid.c:563:37: note: Function 'bd_md_create' argument 1 names different: declaration 'raid_spec' definition 'device_name'.
libblockdev-2.16-1/src/plugins/mpath.c:190:5: style: Variable 'path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/mpath.c:186:0: note: Variable 'path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mpath.c:190:5: note: Variable 'path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mpath.c:191:5: style: Variable 'link' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/mpath.c:187:0: note: Variable 'link' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mpath.c:191:5: note: Variable 'link' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/mpath.c:404:31: portability: '(void*)names' is of type 'void *'. When using void pointers in calculations, the behaviour is undefined. [arithOperationsOnVoidPointer]
libblockdev-2.16-1/src/plugins/mpath.c:487:31: portability: '(void*)names' is of type 'void *'. When using void pointers in calculations, the behaviour is undefined. [arithOperationsOnVoidPointer]
libblockdev-2.16-1/src/plugins/part.c:465:15: style: Redundant condition: part. '!part || (part && *part=='\0')' is equivalent to '!part || *part=='\0'' [redundantCondition]
libblockdev-2.16-1/src/plugins/part.c:1119:15: style: Redundant condition: part. '!part || (part && *part=='\0')' is equivalent to '!part || *part=='\0'' [redundantCondition]
libblockdev-2.16-1/src/plugins/part.c:1219:15: style: Redundant condition: part. '!part || (part && *part=='\0')' is equivalent to '!part || *part=='\0'' [redundantCondition]
libblockdev-2.16-1/src/plugins/part.c:1397:15: style: Redundant condition: part. '!part || (part && *part=='\0')' is equivalent to '!part || *part=='\0'' [redundantCondition]
libblockdev-2.16-1/src/plugins/part.c:1578:15: style: Redundant condition: part. '!part || (part && *part=='\0')' is equivalent to '!part || *part=='\0'' [redundantCondition]
libblockdev-2.16-1/src/plugins/part.c:1688:15: style: Redundant condition: part. '!part || (part && *part=='\0')' is equivalent to '!part || *part=='\0'' [redundantCondition]
libblockdev-2.16-1/src/plugins/part.c:1792:15: style: Redundant condition: part. '!part || (part && *part=='\0')' is equivalent to '!part || *part=='\0'' [redundantCondition]
libblockdev-2.16-1/src/plugins/part.c:1848:15: style: Redundant condition: part. '!part || (part && *part=='\0')' is equivalent to '!part || *part=='\0'' [redundantCondition]
libblockdev-2.16-1/src/plugins/part.c:1914:15: style: Redundant condition: part. '!part || (part && *part=='\0')' is equivalent to '!part || *part=='\0'' [redundantCondition]
libblockdev-2.16-1/src/plugins/part.c:1799:36: warning: Either the condition 'part' is redundant or there is possible null pointer dereference: part. [nullPointerRedundantCheck]
libblockdev-2.16-1/src/plugins/part.c:1792:19: note: Assuming that condition 'part' is not redundant
libblockdev-2.16-1/src/plugins/part.c:1799:36: note: Null pointer dereference
libblockdev-2.16-1/src/plugins/part.c:1855:36: warning: Either the condition 'part' is redundant or there is possible null pointer dereference: part. [nullPointerRedundantCheck]
libblockdev-2.16-1/src/plugins/part.c:1848:19: note: Assuming that condition 'part' is not redundant
libblockdev-2.16-1/src/plugins/part.c:1855:36: note: Null pointer dereference
libblockdev-2.16-1/src/plugins/part.c:1920:36: warning: Either the condition 'part' is redundant or there is possible null pointer dereference: part. [nullPointerRedundantCheck]
libblockdev-2.16-1/src/plugins/part.c:1914:19: note: Assuming that condition 'part' is not redundant
libblockdev-2.16-1/src/plugins/part.c:1920:36: note: Null pointer dereference
libblockdev-2.16-1/src/plugins/part.c:1799:25: warning: Either the condition 'part' is redundant or there is pointer arithmetic with NULL pointer. [nullPointerArithmeticRedundantCheck]
libblockdev-2.16-1/src/plugins/part.c:1792:19: note: Assuming that condition 'part' is not redundant
libblockdev-2.16-1/src/plugins/part.c:1799:25: note: Null pointer addition
libblockdev-2.16-1/src/plugins/part.c:1855:25: warning: Either the condition 'part' is redundant or there is pointer arithmetic with NULL pointer. [nullPointerArithmeticRedundantCheck]
libblockdev-2.16-1/src/plugins/part.c:1848:19: note: Assuming that condition 'part' is not redundant
libblockdev-2.16-1/src/plugins/part.c:1855:25: note: Null pointer addition
libblockdev-2.16-1/src/plugins/part.c:1920:25: warning: Either the condition 'part' is redundant or there is pointer arithmetic with NULL pointer. [nullPointerArithmeticRedundantCheck]
libblockdev-2.16-1/src/plugins/part.c:1914:19: note: Assuming that condition 'part' is not redundant
libblockdev-2.16-1/src/plugins/part.c:1920:25: note: Null pointer addition
libblockdev-2.16-1/src/plugins/part.c:112:5: style: Variable 'error_msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:111:0: note: Variable 'error_msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:112:5: note: Variable 'error_msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:296:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:294:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:296:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:300:5: style: Variable 'dev' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:289:0: note: Variable 'dev' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:300:5: note: Variable 'dev' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:413:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:410:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:413:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:537:5: style: Variable 'dev' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:531:0: note: Variable 'dev' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:537:5: note: Variable 'dev' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:592:5: style: Variable 'dev' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:585:0: note: Variable 'dev' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:592:5: note: Variable 'dev' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:638:5: style: Variable 'dev' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:631:0: note: Variable 'dev' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:638:5: note: Variable 'dev' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:729:5: style: Variable 'free_regs' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:725:0: note: Variable 'free_regs' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:729:5: note: Variable 'free_regs' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:915:5: style: Variable 'constr' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:907:0: note: Variable 'constr' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:915:5: note: Variable 'constr' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:998:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:996:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:998:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:1002:5: style: Variable 'dev' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:987:0: note: Variable 'dev' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:1002:5: note: Variable 'dev' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:1115:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:1113:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:1115:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:1215:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:1211:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:1215:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:1392:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:1390:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:1392:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:1497:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:1495:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:1497:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:1501:5: style: Variable 'dev' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:1490:0: note: Variable 'dev' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:1501:5: note: Variable 'dev' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:1573:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:1571:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:1573:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:1683:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/part.c:1681:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/part.c:1683:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:605:21: warning: Either the condition '!fd' is redundant or there is possible null pointer dereference: fd. [nullPointerRedundantCheck]
libblockdev-2.16-1/src/plugins/s390.c:601:9: note: Assuming that condition '!fd' is not redundant
libblockdev-2.16-1/src/plugins/s390.c:605:21: note: Null pointer dereference
libblockdev-2.16-1/src/plugins/s390.c:184:5: style: Variable 'path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/s390.c:180:0: note: Variable 'path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:184:5: note: Variable 'path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:185:5: style: Variable 'fd' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/s390.c:182:0: note: Variable 'fd' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:185:5: note: Variable 'fd' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:233:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/s390.c:231:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:233:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:237:5: style: Variable 'path' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/s390.c:227:0: note: Variable 'path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:237:5: note: Variable 'path' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:238:5: style: Variable 'fd' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/s390.c:228:0: note: Variable 'fd' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:238:5: note: Variable 'fd' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:595:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/s390.c:593:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:595:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:600:5: style: Variable 'fd' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/s390.c:582:0: note: Variable 'fd' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:600:5: note: Variable 'fd' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:787:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/s390.c:785:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:787:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:791:5: style: Variable 'scsifd' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/s390.c:760:0: note: Variable 'scsifd' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:791:5: note: Variable 'scsifd' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:940:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/s390.c:938:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:940:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:944:5: style: Variable 'success' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/s390.c:927:0: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:944:5: note: Variable 'success' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:976:5: style: Variable 'rc' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/s390.c:972:5: note: Variable 'rc' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:976:5: note: Variable 'rc' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/s390.c:293:9: error: Used file that is not opened. [useClosedFile]
libblockdev-2.16-1/src/plugins/s390.c:293:9: error: Resource handle 'fd' freed twice. [doubleFree]
libblockdev-2.16-1/src/plugins/s390.c:968:9: error: Resource leak: fd [resourceLeak]
libblockdev-2.16-1/src/plugins/swap.c:194:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/swap.c:192:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/swap.c:194:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/swap.c:201:5: style: Variable 'dev_file' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/swap.c:182:0: note: Variable 'dev_file' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/swap.c:201:5: note: Variable 'dev_file' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/swap.c:282:5: style: Variable 'msg' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/plugins/swap.c:280:0: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/plugins/swap.c:282:5: note: Variable 'msg' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/utils/exec.c:567:5: style: Variable 'regex' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/utils/exec.c:563:0: note: Variable 'regex' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/utils/exec.c:567:5: note: Variable 'regex' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/utils/exec.c:792:5: style: Variable 'out_file' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/utils/exec.c:789:0: note: Variable 'out_file' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/utils/exec.c:792:5: note: Variable 'out_file' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/utils/module.c:53:5: style: Variable 'ctx' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/utils/module.c:46:0: note: Variable 'ctx' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/utils/module.c:53:5: note: Variable 'ctx' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/utils/module.c:96:5: style: Variable 'ctx' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/utils/module.c:91:0: note: Variable 'ctx' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/utils/module.c:96:5: note: Variable 'ctx' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/utils/module.c:159:5: style: Variable 'ctx' is reassigned a value before the old one has been used. [redundantAssignment]
libblockdev-2.16-1/src/utils/module.c:151:0: note: Variable 'ctx' is reassigned a value before the old one has been used.
libblockdev-2.16-1/src/utils/module.c:159:5: note: Variable 'ctx' is reassigned a value before the old one has been used.
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libblocksruntime/libblocksruntime_0.4.1.orig.tar.gz
libblocksruntime-0.4.1/runtime.c:483:11: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libblocksruntime-0.4.1/runtime.c:347:58: style: Function 'Block_size' argument 1 names different: declaration 'block_basic' definition 'arg'. [funcArgNamesDifferent]
libblocksruntime-0.4.1/Block_private.h:123:49: note: Function 'Block_size' argument 1 names different: declaration 'block_basic' definition 'arg'.
libblocksruntime-0.4.1/runtime.c:347:58: note: Function 'Block_size' argument 1 names different: declaration 'block_basic' definition 'arg'.
libblocksruntime-0.4.1/test/main.c:41:5: style: Variable 'rv' is reassigned a value before the old one has been used. [redundantAssignment]
libblocksruntime-0.4.1/test/main.c:40:5: note: Variable 'rv' is reassigned a value before the old one has been used.
libblocksruntime-0.4.1/test/main.c:41:5: note: Variable 'rv' is reassigned a value before the old one has been used.
libblocksruntime-0.4.1/test/main.c:42:5: style: Variable 'rv' is reassigned a value before the old one has been used. [redundantAssignment]
libblocksruntime-0.4.1/test/main.c:41:5: note: Variable 'rv' is reassigned a value before the old one has been used.
libblocksruntime-0.4.1/test/main.c:42:5: note: Variable 'rv' is reassigned a value before the old one has been used.
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbloom/libbloom_1.5.orig.tar.gz
libbloom-1.5/bloom.c:59:25: style: The scope of the variable 'x' can be reduced. [variableScope]
libbloom-1.5/misc/test/test.c:191:9: style: Variable 'rv' is assigned a value that is never used. [unreadVariable]
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbloom-filter-perl/libbloom-filter-perl_1.2.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbluedevil/libbluedevil_2.0~rc1-6-g7bb223c.orig.tar.xz
libbluedevil-2.0~rc1-6-g7bb223c/bluedevil/bluedeviladapter.cpp:86:58: style: Function '_k_propertyChanged' argument 1 names different: declaration 'property' definition 'interface_name'. [funcArgNamesDifferent]
libbluedevil-2.0~rc1-6-g7bb223c/bluedevil/bluedeviladapter.cpp:43:44: note: Function '_k_propertyChanged' argument 1 names different: declaration 'property' definition 'interface_name'.
libbluedevil-2.0~rc1-6-g7bb223c/bluedevil/bluedeviladapter.cpp:86:58: note: Function '_k_propertyChanged' argument 1 names different: declaration 'property' definition 'interface_name'.
libbluedevil-2.0~rc1-6-g7bb223c/bluedevil/bluedeviladapter.cpp:58:19: warning: Member variable 'Private::m_bluezAdapterInterface' is not initialized in the constructor. [uninitMemberVar]
libbluedevil-2.0~rc1-6-g7bb223c/bluedevil/bluedeviladapter.cpp:58:19: warning: Member variable 'Private::m_dbusPropertiesInterface' is not initialized in the constructor. [uninitMemberVar]
libbluedevil-2.0~rc1-6-g7bb223c/bluedevil/bluedeviladapter.cpp:37:5: style: Class 'Private' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libbluedevil-2.0~rc1-6-g7bb223c/bluedevil/bluedevildevice.cpp:71:17: performance: Technically the member function 'BlueDevil::Private::_k_stringListToUpper' can be static. [functionStatic]
libbluedevil-2.0~rc1-6-g7bb223c/bluedevil/bluedevildevice.cpp:104:30: note: Technically the member function 'BlueDevil::Private::_k_stringListToUpper' can be static.
libbluedevil-2.0~rc1-6-g7bb223c/bluedevil/bluedevildevice.cpp:71:17: note: Technically the member function 'BlueDevil::Private::_k_stringListToUpper' can be static.
libbluedevil-2.0~rc1-6-g7bb223c/bluedevil/bluedevilmanager.cpp:137:13: style: The scope of the variable 'device' can be reduced. [variableScope]
libbluedevil-2.0~rc1-6-g7bb223c/bluedevil/bluedevilmanager.h:174:5: style: Class 'Manager' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libbluedevil-2.0~rc1-6-g7bb223c/bluedevil/bluedevilmanager_p.h:38:5: style: Class 'ManagerPrivate' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libbluedevil-2.0~rc1-6-g7bb223c/bluedevil/test/adaptertest.h:42:5: style: Class 'AdapterTest' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libbluedevil-2.0~rc1-6-g7bb223c/bluedevil/test/bluedeviltest.h:41:5: style: Class 'DeviceReceiver' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbluray/libbluray_1.0.2.orig.tar.bz2

ftp://ftp.se.debian.org/debian/pool/main/libb/libbonobo/libbonobo_2.32.1.orig.tar.gz
libbonobo-2.32.1/activation-server/activation-context-corba.c:77:6: style: The scope of the variable 'i' can be reduced. [variableScope]
libbonobo-2.32.1/activation-server/activation-context-corba.c:121:6: style: The scope of the variable 'i' can be reduced. [variableScope]
libbonobo-2.32.1/activation-server/activation-context-corba.c:247:7: style: The scope of the variable 'i' can be reduced. [variableScope]
libbonobo-2.32.1/activation-server/activation-context-corba.c:713:6: style: The scope of the variable 'i' can be reduced. [variableScope]
libbonobo-2.32.1/activation-server/activation-context-corba.c:713:9: style: The scope of the variable 'j' can be reduced. [variableScope]
libbonobo-2.32.1/activation-server/activation-context-corba.c:713:12: style: The scope of the variable 'total' can be reduced. [variableScope]
libbonobo-2.32.1/activation-server/activation-server-main.c:207:16: style: The scope of the variable 'gnome_dirs' can be reduced. [variableScope]
libbonobo-2.32.1/activation-server/activation-server-main.c:209:13: style: The scope of the variable 'i' can be reduced. [variableScope]
libbonobo-2.32.1/activation-server/object-directory-config-file.c:61:9: style: Variable 'doc' is reassigned a value before the old one has been used. [redundantAssignment]
libbonobo-2.32.1/activation-server/object-directory-config-file.c:44:0: note: Variable 'doc' is reassigned a value before the old one has been used.
libbonobo-2.32.1/activation-server/object-directory-config-file.c:61:9: note: Variable 'doc' is reassigned a value before the old one has been used.
libbonobo-2.32.1/activation-server/object-directory-corba.c:499:2: style: Variable 'retval' is reassigned a value before the old one has been used. [redundantAssignment]
libbonobo-2.32.1/activation-server/object-directory-corba.c:485:0: note: Variable 'retval' is reassigned a value before the old one has been used.
libbonobo-2.32.1/activation-server/object-directory-corba.c:499:2: note: Variable 'retval' is reassigned a value before the old one has been used.
libbonobo-2.32.1/activation-server/object-directory-corba.c:166:13: style: The scope of the variable 'i' can be reduced. [variableScope]
libbonobo-2.32.1/activation-server/object-directory-corba.c:1167:13: style: The scope of the variable 'i' can be reduced. [variableScope]
libbonobo-2.32.1/activation-server/object-directory-corba.c:1302:50: style: Function 'bonobo_object_directory_init' argument 2 names different: declaration 'source_directory' definition 'registry_path'. [funcArgNamesDifferent]
libbonobo-2.32.1/activation-server/object-directory.h:68:84: note: Function 'bonobo_object_directory_init' argument 2 names different: declaration 'source_directory' definition 'registry_path'.
libbonobo-2.32.1/activation-server/object-directory-corba.c:1302:50: note: Function 'bonobo_object_directory_init' argument 2 names different: declaration 'source_directory' definition 'registry_path'.
libbonobo-2.32.1/activation-server/object-directory-corba.c:1324:46: style: Function 'bonobo_object_directory_re_check_fn' argument 2 names different: declaration 'od_iorstr' definition 'act_iid'. [funcArgNamesDifferent]
libbonobo-2.32.1/activation-server/object-directory.h:75:97: note: Function 'bonobo_object_directory_re_check_fn' argument 2 names different: declaration 'od_iorstr' definition 'act_iid'.
libbonobo-2.32.1/activation-server/object-directory-corba.c:1324:46: note: Function 'bonobo_object_directory_re_check_fn' argument 2 names different: declaration 'od_iorstr' definition 'act_iid'.
libbonobo-2.32.1/activation-server/object-directory-load.c:442:17: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libbonobo-2.32.1/activation-server/object-directory-load.c:627:15: style: The scope of the variable 'pathname' can be reduced. [variableScope]
libbonobo-2.32.1/activation-server/object-directory-load.c:655:50: style: Function 'bonobo_server_info_load' argument 1 names different: declaration 'dirs' definition 'directories'. [funcArgNamesDifferent]
libbonobo-2.32.1/activation-server/server.h:25:63: note: Function 'bonobo_server_info_load' argument 1 names different: declaration 'dirs' definition 'directories'.
libbonobo-2.32.1/activation-server/object-directory-load.c:655:50: note: Function 'bonobo_server_info_load' argument 1 names different: declaration 'dirs' definition 'directories'.
libbonobo-2.32.1/activation-server/object-directory-load.c:658:50: style: Function 'bonobo_server_info_load' argument 4 names different: declaration 'by_iid' definition 'iid_to_server_info_map'. [funcArgNamesDifferent]
libbonobo-2.32.1/activation-server/server.h:28:63: note: Function 'bonobo_server_info_load' argument 4 names different: declaration 'by_iid' definition 'iid_to_server_info_map'.
libbonobo-2.32.1/activation-server/object-directory-load.c:658:50: note: Function 'bonobo_server_info_load' argument 4 names different: declaration 'by_iid' definition 'iid_to_server_info_map'.
libbonobo-2.32.1/bonobo-activation/bonobo-activation-base-service.c:535:25: style: Condition 'session_guid==NULL' is always true [knownConditionTrueFalse]
libbonobo-2.32.1/bonobo-activation/bonobo-activation-base-service.c:533:40: note: Assignment 'session_guid=get_session_guid()', assigned value is 0
libbonobo-2.32.1/bonobo-activation/bonobo-activation-base-service.c:535:25: note: Condition 'session_guid==NULL' is always true
libbonobo-2.32.1/bonobo-activation/bonobo-activation-base-service.c:551:25: style: Condition 'session_guid==NULL' is always true [knownConditionTrueFalse]
libbonobo-2.32.1/bonobo-activation/bonobo-activation-base-service.c:549:40: note: Assignment 'session_guid=get_session_guid()', assigned value is 0
libbonobo-2.32.1/bonobo-activation/bonobo-activation-base-service.c:551:25: note: Condition 'session_guid==NULL' is always true
libbonobo-2.32.1/bonobo-activation/bonobo-activation-get-language-list.c:52:7: style: The scope of the variable 'i' can be reduced. [variableScope]
libbonobo-2.32.1/bonobo-activation/bonobo-activation-mime.c:68:6: style: The scope of the variable 'i' can be reduced. [variableScope]
libbonobo-2.32.1/bonobo-activation/bonobo-activation-mime.c:233:8: style: The scope of the variable 'bogus_argv' can be reduced. [variableScope]
libbonobo-2.32.1/bonobo-activation/bonobo-activation-server-info.c:73:21: style: The scope of the variable 'retval' can be reduced. [variableScope]
libbonobo-2.32.1/bonobo-activation/bonobo-activation-server-info.c:74:15: style: The scope of the variable 'prop_name_buf' can be reduced. [variableScope]
libbonobo-2.32.1/bonobo-activation/bonobo-activation-shlib.c:77:6: style: The scope of the variable 'i' can be reduced. [variableScope]
libbonobo-2.32.1/bonobo/bonobo-app-client.c:62:53: style: Function 'bonobo_app_client_class_init' argument 1 names different: declaration 'klass' definition 'class'. [funcArgNamesDifferent]
libbonobo-2.32.1/bonobo/bonobo-app-client.c:9:68: note: Function 'bonobo_app_client_class_init' argument 1 names different: declaration 'klass' definition 'class'.
libbonobo-2.32.1/bonobo/bonobo-app-client.c:62:53: note: Function 'bonobo_app_client_class_init' argument 1 names different: declaration 'klass' definition 'class'.
libbonobo-2.32.1/bonobo/bonobo-application.c:564:11: style: The scope of the variable 'i' can be reduced. [variableScope]
libbonobo-2.32.1/bonobo/bonobo-application.c:699:17: style: The scope of the variable 'hook' can be reduced. [variableScope]
libbonobo-2.32.1/bonobo/bonobo-application.c:720:17: style: The scope of the variable 'hook' can be reduced. [variableScope]
libbonobo-2.32.1/bonobo/bonobo-moniker-util.c:433:45: warning: Either the condition 'name!=NULL' is redundant or there is possible null pointer dereference: name. [nullPointerRedundantCheck]
libbonobo-2.32.1/bonobo/bonobo-moniker-util.c:433:34: note: Assuming that condition 'name!=NULL' is not redundant
libbonobo-2.32.1/bonobo/bonobo-moniker-util.c:433:45: note: Null pointer dereference
libbonobo-2.32.1/bonobo/bonobo-moniker-util.c:1197:2: style: Variable 'ctx' is reassigned a value before the old one has been used. [redundantAssignment]
libbonobo-2.32.1/bonobo/bonobo-moniker-util.c:1190:0: note: Variable 'ctx' is reassigned a value before the old one has been used.
libbonobo-2.32.1/bonobo/bonobo-moniker-util.c:1197:2: note: Variable 'ctx' is reassigned a value before the old one has been used.
libbonobo-2.32.1/bonobo/bonobo-moniker-util.c:1219:2: style: Variable 'ctx' is reassigned a value before the old one has been used. [redundantAssignment]
libbonobo-2.32.1/bonobo/bonobo-moniker-util.c:1211:0: note: Variable 'ctx' is reassigned a value before the old one has been used.
libbonobo-2.32.1/bonobo/bonobo-moniker-util.c:1219:2: note: Variable 'ctx' is reassigned a value before the old one has been used.
libbonobo-2.32.1/bonobo/bonobo-moniker-util.c:1245:2: style: Variable 'ctx' is reassigned a value before the old one has been used. [redundantAssignment]
libbonobo-2.32.1/bonobo/bonobo-moniker-util.c:1238:0: note: Variable 'ctx' is reassigned a value before the old one has been used.
libbonobo-2.32.1/bonobo/bonobo-moniker-util.c:1245:2: note: Variable 'ctx' is reassigned a value before the old one has been used.
libbonobo-2.32.1/bonobo/bonobo-moniker-util.c:1272:2: style: Variable 'ctx' is reassigned a value before the old one has been used. [redundantAssignment]
libbonobo-2.32.1/bonobo/bonobo-moniker-util.c:1264:0: note: Variable 'ctx' is reassigned a value before the old one has been used.
libbonobo-2.32.1/bonobo/bonobo-moniker-util.c:1272:2: note: Variable 'ctx' is reassigned a value before the old one has been used.
libbonobo-2.32.1/bonobo/bonobo-moniker-util.c:1123:18: style: The scope of the variable 'cn' can be reduced. [variableScope]
libbonobo-2.32.1/bonobo/bonobo-object.c:757:21: style: The scope of the variable 'xklass' can be reduced. [variableScope]
libbonobo-2.32.1/bonobo/bonobo-object.c:818:16: style: The scope of the variable 'object' can be reduced. [variableScope]
libbonobo-2.32.1/bonobo/bonobo-object.c:49:14: style: struct member 'BonoboDebugRefData::fn' is never used. [unusedStructMember]
libbonobo-2.32.1/bonobo/bonobo-object.c:51:14: style: struct member 'BonoboDebugRefData::line' is never used. [unusedStructMember]
libbonobo-2.32.1/bonobo/bonobo-persist-client.c:27:2: style: Variable 'pstream' is reassigned a value before the old one has been used. [redundantAssignment]
libbonobo-2.32.1/bonobo/bonobo-persist-client.c:24:0: note: Variable 'pstream' is reassigned a value before the old one has been used.
libbonobo-2.32.1/bonobo/bonobo-persist-client.c:27:2: note: Variable 'pstream' is reassigned a value before the old one has been used.
libbonobo-2.32.1/bonobo/bonobo-running-context.c:325:21: style: The scope of the variable 'old_key' can be reduced. [variableScope]
libbonobo-2.32.1/bonobo/bonobo-storage-memory.c:89:25: style: The scope of the variable 'ret' can be reduced. [variableScope]
libbonobo-2.32.1/bonobo/bonobo-storage-memory.c:153:25: style: The scope of the variable 'ret' can be reduced. [variableScope]
libbonobo-2.32.1/bonobo/bonobo-stream-client.c:215:26: style: Function 'bonobo_stream_client_get_length' argument 2 names different: declaration 'ev' definition 'opt_ev'. [funcArgNamesDifferent]
libbonobo-2.32.1/bonobo/bonobo-stream-client.h:41:32: note: Function 'bonobo_stream_client_get_length' argument 2 names different: declaration 'ev' definition 'opt_ev'.
libbonobo-2.32.1/bonobo/bonobo-stream-client.c:215:26: note: Function 'bonobo_stream_client_get_length' argument 2 names different: declaration 'ev' definition 'opt_ev'.
libbonobo-2.32.1/monikers/bonobo-moniker-cache.c:23:16: style: The scope of the variable 'stream' can be reduced. [variableScope]
libbonobo-2.32.1/monikers/bonobo-stream-cache.c:138:7: style: The scope of the variable 'tag' can be reduced. [variableScope]
libbonobo-2.32.1/monikers/bonobo-stream-cache.c:139:6: style: The scope of the variable 'index' can be reduced. [variableScope]
libbonobo-2.32.1/monikers/bonobo-stream-cache.c:139:13: style: The scope of the variable 'offset' can be reduced. [variableScope]
libbonobo-2.32.1/monikers/bonobo-stream-cache.c:217:7: style: The scope of the variable 'tag' can be reduced. [variableScope]
libbonobo-2.32.1/monikers/bonobo-stream-cache.c:218:6: style: The scope of the variable 'index' can be reduced. [variableScope]
libbonobo-2.32.1/monikers/bonobo-stream-cache.c:218:13: style: The scope of the variable 'offset' can be reduced. [variableScope]
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-common.c:14:84: style: Function '_ORBIT_skel_small_Bonobo_Sample_Echo_echo' argument 1 names different: declaration '_ORBIT_servant' definition '_o_servant'. [funcArgNamesDifferent]
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo.h:74:72: note: Function '_ORBIT_skel_small_Bonobo_Sample_Echo_echo' argument 1 names different: declaration '_ORBIT_servant' definition '_o_servant'.
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-common.c:14:84: note: Function '_ORBIT_skel_small_Bonobo_Sample_Echo_echo' argument 1 names different: declaration '_ORBIT_servant' definition '_o_servant'.
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-common.c:14:116: style: Function '_ORBIT_skel_small_Bonobo_Sample_Echo_echo' argument 2 names different: declaration '_ORBIT_retval' definition '_o_retval'. [funcArgNamesDifferent]
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo.h:74:97: note: Function '_ORBIT_skel_small_Bonobo_Sample_Echo_echo' argument 2 names different: declaration '_ORBIT_retval' definition '_o_retval'.
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-common.c:14:116: note: Function '_ORBIT_skel_small_Bonobo_Sample_Echo_echo' argument 2 names different: declaration '_ORBIT_retval' definition '_o_retval'.
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-common.c:14:146: style: Function '_ORBIT_skel_small_Bonobo_Sample_Echo_echo' argument 3 names different: declaration '_ORBIT_args' definition '_o_args'. [funcArgNamesDifferent]
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo.h:74:122: note: Function '_ORBIT_skel_small_Bonobo_Sample_Echo_echo' argument 3 names different: declaration '_ORBIT_args' definition '_o_args'.
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-common.c:14:146: note: Function '_ORBIT_skel_small_Bonobo_Sample_Echo_echo' argument 3 names different: declaration '_ORBIT_args' definition '_o_args'.
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-common.c:14:174: style: Function '_ORBIT_skel_small_Bonobo_Sample_Echo_echo' argument 4 names different: declaration 'ctx' definition '_o_ctx'. [funcArgNamesDifferent]
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo.h:74:149: note: Function '_ORBIT_skel_small_Bonobo_Sample_Echo_echo' argument 4 names different: declaration 'ctx' definition '_o_ctx'.
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-common.c:14:174: note: Function '_ORBIT_skel_small_Bonobo_Sample_Echo_echo' argument 4 names different: declaration 'ctx' definition '_o_ctx'.
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-common.c:14:201: style: Function '_ORBIT_skel_small_Bonobo_Sample_Echo_echo' argument 5 names different: declaration 'ev' definition '_o_ev'. [funcArgNamesDifferent]
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo.h:74:172: note: Function '_ORBIT_skel_small_Bonobo_Sample_Echo_echo' argument 5 names different: declaration 'ev' definition '_o_ev'.
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-common.c:14:201: note: Function '_ORBIT_skel_small_Bonobo_Sample_Echo_echo' argument 5 names different: declaration 'ev' definition '_o_ev'.
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-skels.c:43:20: style: Function 'POA_Bonobo_Sample_Echo__init' argument 2 names different: declaration 'ev' definition 'env'. [funcArgNamesDifferent]
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo.h:69:93: note: Function 'POA_Bonobo_Sample_Echo__init' argument 2 names different: declaration 'ev' definition 'env'.
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-skels.c:43:20: note: Function 'POA_Bonobo_Sample_Echo__init' argument 2 names different: declaration 'ev' definition 'env'.
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-skels.c:56:20: style: Function 'POA_Bonobo_Sample_Echo__fini' argument 2 names different: declaration 'ev' definition 'env'. [funcArgNamesDifferent]
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo.h:70:93: note: Function 'POA_Bonobo_Sample_Echo__fini' argument 2 names different: declaration 'ev' definition 'env'.
libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-skels.c:56:20: note: Function 'POA_Bonobo_Sample_Echo__fini' argument 2 names different: declaration 'ev' definition 'env'.
libbonobo-2.32.1/tests/test-properties-server.c:241:51: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
libbonobo-2.32.1/tests/test-properties-server.c:242:51: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
libbonobo-2.32.1/tests/test-properties-server.c:243:51: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
libbonobo-2.32.1/tests/test-storage-mem.c:270:9: style: Variable 'info' is assigned a value that is never used. [unreadVariable]
libbonobo-2.32.1/tests/test-storage-mem.c:286:13: style: Variable 'dir_list' is assigned a value that is never used. [unreadVariable]
libbonobo-2.32.1/tests/test-uniqapp.c:79:29: style: The scope of the variable 'msg_arg' can be reduced. [variableScope]
libbonobo-2.32.1/utils/bonobo-activation-sysconf.c:68:9: style: Variable 'doc' is reassigned a value before the old one has been used. [redundantAssignment]
libbonobo-2.32.1/utils/bonobo-activation-sysconf.c:52:0: note: Variable 'doc' is reassigned a value before the old one has been used.
libbonobo-2.32.1/utils/bonobo-activation-sysconf.c:68:9: note: Variable 'doc' is reassigned a value before the old one has been used.
[09:01]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbonoboui/libbonoboui_2.24.5.orig.tar.bz2

ftp://ftp.se.debian.org/debian/pool/main/libb/libboolean-perl/libboolean-perl_0.46.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libboost-geometry-utils-perl/libboost-geometry-utils-perl_0.15.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbot-basicbot-perl/libbot-basicbot-perl_0.93.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbot-basicbot-pluggable-perl/libbot-basicbot-pluggable-perl_1.20.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbot-training-perl/libbot-training-perl_0.06.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libboulder-perl/libboulder-perl_1.30.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbpp-core/libbpp-core_2.4.0.orig.tar.gz
Checking bpp-core-2.4.0/test/test_dAGraphObs.cpp: __GCC__=1;__GCC__=1...

bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:320:12: style: The scope of the variable 'lowerBound' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:320:24: style: The scope of the variable 'upperBound' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:321:10: style: The scope of the variable 'inclLowerBound' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:321:26: style: The scope of the variable 'inclUpperBound' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/App/ApplicationTools.cpp:71:18: style: The scope of the variable 'pos2' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/App/ApplicationTools.cpp:105:18: style: The scope of the variable 'pos2' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:305:103: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:310:103: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/NumConstants.h:90:79: warning: Passing value 0 to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/NumConstants.h:91:80: warning: Passing value 0 to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/NumConstants.h:92:79: warning: Passing value 0 to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:457:34: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:540:34: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:570:34: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:581:34: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/NumTools.h:132:13: style: Expression 'log(1 + x)' can be replaced by 'log1p(x)' to avoid loss of precision. [unpreciseMathCall]
bpp-core-2.4.0/src/Bpp/Numeric/NumTools.h:133:13: style: Expression 'log(1 + x)' can be replaced by 'log1p(x)' to avoid loss of precision. [unpreciseMathCall]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:378:3: warning: Member variable 'LinearMatrix::rows_' is not initialized in the constructor. [uninitMemberVar]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:378:3: warning: Member variable 'LinearMatrix::cols_' is not initialized in the constructor. [uninitMemberVar]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:174:63: performance: Variable 'stream_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
bpp-core-2.4.0/src/Bpp/Text/NestedStringTokenizer.h:93:17: performance: Technically the member function 'bpp::NestedStringTokenizer::unparseRemainingTokens' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:173:3: style: Class 'StlOutputStream' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:226:3: style: Class 'StlOutputStreamWrapper' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Exceptions.h:66:5: style: Class 'Exception' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Exceptions.h:82:5: style: Class 'IOException' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Exceptions.h:94:5: style: Class 'NullPointerException' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Exceptions.h:104:5: style: Class 'ZeroDivisionException' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Exceptions.h:228:5: style: Class 'NotImplementedException' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:195:3: style: Class 'IntervalConstraint' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:64:5: style: Class 'ParameterEvent' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:70:5: style: Class 'AbstractParametrizable' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:273:5: style: Class 'FunctionWrapper' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:370:5: style: Class 'DerivableFirstOrderWrapper' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:398:5: style: Class 'DerivableSecondOrderWrapper' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:433:5: style: Class 'InfinityFunctionWrapper' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:531:5: style: Class 'InfinityDerivableFirstOrderWrapper' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:559:5: style: Class 'InfinityDerivableSecondOrderWrapper' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:254:5: style: Class 'ColMatrix' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:378:3: style: Class 'LinearMatrix' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:146:0: style: Class 'bpp :: RowMatrix < double >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:90:17: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Clonable.h:109:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:90:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:113:17: style: The function 'setPrecision' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:80:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:113:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:118:7: style: The function 'getPrecision' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:81:15: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:118:7: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:120:25: style: The function 'enableScientificNotation' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:82:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:120:25: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:121:16: style: The function 'isScientificNotationEnabled' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:83:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:121:16: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:268:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:68:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:268:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:269:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:69:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:269:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:270:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:70:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:270:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:271:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:71:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:271:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:272:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:72:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:272:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:273:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:73:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:273:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:274:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:74:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:274:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:275:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:75:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:275:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:280:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:76:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:280:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:285:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:77:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:285:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:286:17: style: The function 'endLine' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:78:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:286:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:287:17: style: The function 'flush' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:79:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:287:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:306:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:68:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:306:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:307:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:69:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:307:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:308:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:70:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:308:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:309:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:71:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:309:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:310:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:72:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:310:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:311:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:73:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:311:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:312:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:74:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:312:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:313:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:75:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:313:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:318:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:76:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:318:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:323:17: style: The function 'operator<<' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:77:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:323:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:324:17: style: The function 'endLine' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:78:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:324:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:325:17: style: The function 'flush' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:79:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/OutputStream.h:325:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:68:15: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Clonable.h:109:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:68:15: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:222:8: style: The function 'includes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:85:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:222:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:228:16: style: The function 'isCorrect' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:77:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:228:16: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:254:10: style: The function 'getLimit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:93:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:254:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:260:10: style: The function 'getAcceptedLimit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:104:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:260:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:273:15: style: The function 'getDescription' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:111:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:273:15: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:318:15: style: The function 'operator&' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:119:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:318:15: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:425:8: style: The function 'isEmpty' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:125:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Constraints.h:425:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:73:21: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Clonable.h:109:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:73:21: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:91:24: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Clonable.h:109:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:91:24: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:182:16: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Clonable.h:109:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:182:16: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.h:82:18: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Clonable.h:109:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.h:82:18: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:202:10: style: The function 'hasParameter' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:73:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:202:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:203:25: style: The function 'getParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:81:32: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:203:25: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:204:23: style: The function 'getParameter' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:90:30: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:204:23: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:205:10: style: The function 'getParameterValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:98:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:205:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:206:8: style: The function 'setAllParametersValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:112:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:206:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:207:8: style: The function 'setParameterValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:123:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:207:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:208:8: style: The function 'setParametersValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:135:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:208:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:209:8: style: The function 'matchParametersValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:147:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:209:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:210:12: style: The function 'getNumberOfParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:155:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:210:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:211:10: style: The function 'setNamespace' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:163:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:211:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:212:17: style: The function 'getNamespace' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:168:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:212:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:213:17: style: The function 'getParameterNameWithoutNamespace' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:175:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:213:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:75:10: style: The function 'hasParameter' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:73:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:75:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:77:26: style: The function 'getParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:81:32: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:77:26: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:79:22: style: The function 'getParameter' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:90:30: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:79:22: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:89:12: style: The function 'getParameterValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:98:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:89:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:94:10: style: The function 'setAllParametersValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:112:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:94:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:100:10: style: The function 'setParameterValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:123:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:100:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:106:10: style: The function 'setParametersValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:135:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:106:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:112:10: style: The function 'matchParametersValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:147:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:112:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:121:12: style: The function 'getNumberOfParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:155:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:121:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:123:10: style: The function 'setNamespace' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:163:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:123:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:125:17: style: The function 'getNamespace' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:168:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:125:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:127:17: style: The function 'getParameterNameWithoutNamespace' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:175:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:127:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:282:10: style: The function 'hasParameter' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:73:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:282:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:287:10: style: The function 'setParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:100:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:287:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:292:26: style: The function 'getParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:81:32: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:292:26: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:297:22: style: The function 'getParameter' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:90:30: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:297:22: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:302:12: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:108:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:302:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:307:12: style: The function 'f' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:117:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:307:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:312:12: style: The function 'getParameterValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:98:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:312:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:317:10: style: The function 'setAllParametersValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:112:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:317:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:322:10: style: The function 'setParameterValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:123:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:322:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:327:10: style: The function 'setParametersValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:135:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:327:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:332:10: style: The function 'matchParametersValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:147:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:332:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:337:12: style: The function 'getNumberOfParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:155:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:337:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:342:10: style: The function 'setNamespace' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:163:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:342:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:347:17: style: The function 'getNamespace' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:168:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:347:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:352:17: style: The function 'getParameterNameWithoutNamespace' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:175:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:352:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:373:10: style: The function 'enableFirstOrderDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:145:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:373:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:377:10: style: The function 'enableFirstOrderDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:152:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:377:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:381:12: style: The function 'getFirstOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:161:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:381:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:401:10: style: The function 'enableSecondOrderDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:201:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:401:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:405:10: style: The function 'enableSecondOrderDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:208:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:405:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:409:12: style: The function 'getSecondOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:217:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:409:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:413:12: style: The function 'getSecondOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:243:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:413:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:442:10: style: The function 'setParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:100:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:442:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:455:12: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:108:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:455:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:460:12: style: The function 'f' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:117:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:460:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:466:10: style: The function 'setAllParametersValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:112:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:466:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:479:10: style: The function 'setParameterValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:123:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:479:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:492:10: style: The function 'setParametersValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:135:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:492:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:505:10: style: The function 'matchParametersValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:147:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:505:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:609:15: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Clonable.h:109:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:609:15: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:611:10: style: The function 'setParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:100:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:611:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:616:12: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:108:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:616:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:623:10: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:135:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:623:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:181:0: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:72:0: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:181:0: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:183:0: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:79:0: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:183:0: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:185:0: style: The function 'getNumberOfRows' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:97:0: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:185:0: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:187:0: style: The function 'getNumberOfColumns' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:101:0: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:187:0: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:189:0: style: The function 'row' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:106:0: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:189:0: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:206:0: style: The function 'col' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:111:0: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:206:0: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:213:0: style: The function 'resize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:118:0: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:213:0: note: Function in derived class
bpp-core-2.4.0/src/Bpp/App/BppApplication.cpp:54:3: performance: Variable 'params_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
bpp-core-2.4.0/src/Bpp/App/BppApplication.h:64:12: style: Technically the member function 'bpp::BppApplication::done' can be const. [functionConst]
bpp-core-2.4.0/src/Bpp/App/BppApplication.cpp:71:22: note: Technically the member function 'bpp::BppApplication::done' can be const.
bpp-core-2.4.0/src/Bpp/App/BppApplication.h:64:12: note: Technically the member function 'bpp::BppApplication::done' can be const.
bpp-core-2.4.0/src/Bpp/Numeric/VectorTools.h:1277:12: style: Technically the member function 'bpp::VectorTools::order_Cmp_::operator()' can be const. [functionConst]
bpp-core-2.4.0/src/Bpp/Numeric/VectorTools.h:1276:7: style: Class 'order_Cmp_' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/VectorTools.h:936:65: performance: Function parameter 'variableName' should be passed by const reference. [passedByValue]
bpp-core-2.4.0/src/Bpp/App/NumCalcApplicationTools.cpp:74:10: style: Unused variable: key [unusedVariable]
bpp-core-2.4.0/src/Bpp/App/NumCalcApplicationTools.cpp:74:15: style: Unused variable: val [unusedVariable]
bpp-core-2.4.0/src/Bpp/Text/KeyvalTools.h:60:5: style: Class 'KeyvalException' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/BppString.h:63:5: style: Class 'BppString' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/BppString.h:64:5: style: Class 'BppString' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/BppString.h:67:16: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Clonable.h:109:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/BppString.h:67:16: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Exceptions.cpp:90:18: warning: Access of moved variable 'badNumber'. [accessMoved]
bpp-core-2.4.0/src/Bpp/Exceptions.cpp:89:41: note: Calling std::move(badNumber)
bpp-core-2.4.0/src/Bpp/Exceptions.cpp:90:18: note: $symbol:badNumber
Access of moved variable '$symbol'.
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:54:31: style: Function 'GlobalGraph' argument 1 names different: declaration 'directed' definition 'directed_p'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:260:20: note: Function 'GlobalGraph' argument 1 names different: declaration 'directed' definition 'directed_p'.
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:54:31: note: Function 'GlobalGraph' argument 1 names different: declaration 'directed' definition 'directed_p'.
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:145:125: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:350:133: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:365:133: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:537:109: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:543:109: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:552:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:577:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:589:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:601:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:612:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:628:108: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:652:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:663:95: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:685:128: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:698:136: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:724:81: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:768:36: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:780:38: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:803:81: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:811:81: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:844:93: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:853:121: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:857:135: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:877:93: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:884:117: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:887:135: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:904:117: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:907:141: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:979:107: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:987:107: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:913:17: style: Technically the member function 'bpp::EdgesIteratorClass::operator*' can be const. [functionConst]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:933:17: style: Technically the member function 'bpp::EdgesIteratorClass::operator*' can be const. [functionConst]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:952:17: style: Technically the member function 'bpp::EdgesIteratorClass::operator*' can be const. [functionConst]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:260:3: style: Class 'GlobalGraph' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:266:16: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Clonable.h:109:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:266:16: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:276:8: style: The function 'setRoot' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:77:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:276:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:283:17: style: The function 'getRoot' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:84:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:283:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:295:8: style: The function 'makeDirected' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:97:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:295:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:306:8: style: The function 'makeUndirected' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:109:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:306:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:321:17: style: The function 'createNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:124:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:321:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:329:17: style: The function 'createNodeFromNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:132:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:329:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:345:17: style: The function 'createNodeFromEdge' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:148:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:345:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:392:8: style: The function 'deleteNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:185:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:392:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:406:8: style: The function 'registerObserver' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:199:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:406:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:411:8: style: The function 'unregisterObserver' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:206:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:411:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:455:10: style: The function 'getNumberOfNodes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:269:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:455:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:461:10: style: The function 'getNumberOfEdges' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:275:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:461:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:469:10: style: The function 'getDegree' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:283:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:469:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:475:8: style: The function 'isLeaf' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:289:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:475:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:483:10: style: The function 'getNumberOfNeighbors' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:297:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:483:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:491:10: style: The function 'getNumberOfOutgoingNeighbors' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:305:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:491:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:499:10: style: The function 'getNumberOfIncomingNeighbors' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:313:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:499:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:507:30: style: The function 'getNeighbors' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:321:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:507:30: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:515:30: style: The function 'getOutgoingNeighbors' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:330:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:515:30: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:523:30: style: The function 'getIncomingNeighbors' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:339:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:523:30: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:532:30: style: The function 'getLeavesFromNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:349:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:532:30: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:540:30: style: The function 'getAllLeaves' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:357:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:540:30: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:548:30: style: The function 'getAllNodes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:373:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:548:30: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:555:30: style: The function 'getAllInnerNodes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:366:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:555:30: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:596:8: style: The function 'isTree' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:414:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:596:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:603:8: style: The function 'isDA' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:421:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:603:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:609:8: style: The function 'orientate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:428:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:609:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:615:8: style: The function 'isDirected' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:435:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:615:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:622:8: style: The function 'containsReciprocalRelations' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:443:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:622:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:632:33: style: The function 'allEdgesIterator' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:477:41: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:632:33: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:719:8: style: The function 'notifyDeletedNodes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:563:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:719:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:730:8: style: The function 'outputToDot' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:575:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:730:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:779:8: style: The function 'next' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:225:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:779:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:780:8: style: The function 'end' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:226:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:780:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:781:8: style: The function 'start' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:227:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:781:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:783:17: style: The function 'operator*' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:229:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:783:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:848:8: style: The function 'next' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:225:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:848:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:849:8: style: The function 'end' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:226:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:849:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:850:8: style: The function 'start' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:227:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:850:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:852:17: style: The function 'operator*' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:229:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:852:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:868:8: style: The function 'next' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:225:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:868:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:869:8: style: The function 'end' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:226:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:869:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:870:8: style: The function 'start' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:227:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:870:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:872:17: style: The function 'operator*' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:229:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:872:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:909:8: style: The function 'next' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:464:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:909:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:910:8: style: The function 'end' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:465:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:910:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:911:8: style: The function 'start' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:466:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:911:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:929:8: style: The function 'next' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:464:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:929:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:930:8: style: The function 'end' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:465:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:930:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:931:8: style: The function 'start' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:466:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:931:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:948:8: style: The function 'next' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:464:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:948:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:949:8: style: The function 'end' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:465:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:949:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:950:8: style: The function 'start' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:466:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.h:950:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:567:3: style: Exception should be caught by reference. [catchExceptionByValue]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:251:30: error: Same iterator is used with different containers 'nodeBRow.second.second' and 'nodeBRow.second.first'. [iterators]
bpp-core-2.4.0/src/Bpp/Graph/GlobalGraph.cpp:458:117: warning: Iterators to containers from different expressions 'foundNode->second.first' and 'foundNode->second.second' are used together. [mismatchingContainerExpression]
bpp-core-2.4.0/src/Bpp/Graphics/RgbColor.h:69:15: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Clonable.h:109:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/RgbColor.h:69:15: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:121:9: performance: Technically the member function 'bpp::XFigGraphicDevice::getFillCode' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.cpp:183:24: note: Technically the member function 'bpp::XFigGraphicDevice::getFillCode' can be static.
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:121:9: note: Technically the member function 'bpp::XFigGraphicDevice::getFillCode' can be static.
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:52:7: style: Class 'UnvalidFlagException' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:75:5: style: Class 'XFigGraphicDevice' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Graphics/Font/Font.h:76:11: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Clonable.h:109:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Font/Font.h:76:11: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:74:10: style: The function 'setXUnit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:86:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:74:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:75:10: style: The function 'setYUnit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:91:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:75:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:76:12: style: The function 'getXUnit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:96:22: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:76:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:77:12: style: The function 'getYUnit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:101:22: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:77:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:79:10: style: The function 'setCurrentForegroundColor' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:103:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:79:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:80:10: style: The function 'setCurrentBackgroundColor' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:104:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:80:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:81:10: style: The function 'setCurrentFont' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:105:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:81:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:82:10: style: The function 'setCurrentPointSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:106:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:82:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:83:10: style: The function 'setCurrentLineType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:107:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:83:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:90:10: style: The function 'setCurrentLayer' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:108:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:90:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:92:21: style: The function 'getCurrentForegroundColor' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:110:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:92:21: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:93:21: style: The function 'getCurrentBackgroundColor' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:111:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:93:21: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:94:17: style: The function 'getCurrentFont' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:112:27: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:94:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:95:18: style: The function 'getCurrentPointSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:113:28: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:95:18: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:96:11: style: The function 'getCurrentLineType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:114:21: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:96:11: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:97:9: style: The function 'getCurrentLayer' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:115:19: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/AbstractGraphicDevice.h:97:9: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:94:10: style: The function 'begin' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:72:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:94:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:95:10: style: The function 'end' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:81:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:95:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:97:10: style: The function 'setCurrentForegroundColor' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:103:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:97:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:98:10: style: The function 'setCurrentBackgroundColor' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:104:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:98:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:99:10: style: The function 'setCurrentFont' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:105:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:99:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:100:10: style: The function 'setCurrentLineType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:107:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:100:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:108:10: style: The function 'drawLine' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:128:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:108:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:109:10: style: The function 'drawRect' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:142:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:109:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:110:10: style: The function 'drawCircle' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:155:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:110:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:111:10: style: The function 'drawText' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:169:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:111:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:112:10: style: The function 'comment' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:176:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Fig/XFigGraphicDevice.h:112:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Font/FontManager.h:111:0: style: The function 'getCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/Font/FontManager.h:72:0: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Font/FontManager.h:111:0: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Font/FontManager.h:123:0: style: The function 'getFont' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/Font/FontManager.h:79:0: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Font/FontManager.h:123:0: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Font/FontManager.h:134:0: style: The function 'getCodes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/Font/FontManager.h:84:0: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Font/FontManager.h:134:0: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Font/FontManager.h:135:0: style: The function 'getFonts' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/Font/FontManager.h:89:0: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Font/FontManager.h:135:0: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Font/FontManager.h:136:0: style: The function 'getNumberOfFonts' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/Font/FontManager.h:94:0: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Font/FontManager.h:136:0: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Font/Font.h:79:10: style: Technically the member function 'bpp::Font::init_' can be const. [functionConst]
bpp-core-2.4.0/src/Bpp/Graphics/Font/Font.cpp:50:12: note: Technically the member function 'bpp::Font::init_' can be const.
bpp-core-2.4.0/src/Bpp/Graphics/Font/Font.h:79:10: note: Technically the member function 'bpp::Font::init_' can be const.
bpp-core-2.4.0/src/Bpp/Utils/MapTools.h:66:87: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Utils/MapTools.h:83:87: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Utils/MapTools.h:100:87: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Utils/MapTools.h:117:87: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graphics/ColorSet.h:120:48: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graphics/ColorSet.h:109:21: style: The function 'getColor' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/ColorSet.h:70:29: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/ColorSet.h:109:21: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/ColorSet.h:116:21: style: The function 'getColor' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/ColorSet.h:79:29: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/ColorSet.h:116:21: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/ColorSet.h:124:30: style: The function 'getColorNames' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/ColorSet.h:84:38: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/ColorSet.h:124:30: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/ColorSet.h:126:12: style: The function 'getNumberOfColors' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/ColorSet.h:89:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/ColorSet.h:126:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.cpp:105:96: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:89:10: style: The function 'begin' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:72:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:89:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:90:10: style: The function 'end' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:81:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:90:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:92:10: style: The function 'setCurrentForegroundColor' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:103:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:92:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:93:10: style: The function 'setCurrentBackgroundColor' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:104:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:93:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:94:10: style: The function 'setCurrentFont' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:105:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:94:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:95:10: style: The function 'setCurrentPointSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:106:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:95:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:96:10: style: The function 'setCurrentLineType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:107:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:96:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:97:10: style: The function 'setCurrentLayer' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:108:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:97:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:99:10: style: The function 'drawLine' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:128:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:99:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:100:10: style: The function 'drawRect' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:142:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:100:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:101:10: style: The function 'drawCircle' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:155:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:101:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:102:10: style: The function 'drawText' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:169:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:102:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:103:10: style: The function 'comment' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:176:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Latex/PgfGraphicDevice.h:103:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Svg/SvgGraphicDevice.cpp:65:86: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graphics/Svg/SvgGraphicDevice.h:83:10: style: The function 'begin' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:72:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Svg/SvgGraphicDevice.h:83:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Svg/SvgGraphicDevice.h:84:10: style: The function 'end' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:81:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Svg/SvgGraphicDevice.h:84:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Svg/SvgGraphicDevice.h:86:10: style: The function 'drawLine' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:128:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Svg/SvgGraphicDevice.h:86:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Svg/SvgGraphicDevice.h:87:10: style: The function 'drawRect' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:142:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Svg/SvgGraphicDevice.h:87:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Svg/SvgGraphicDevice.h:88:10: style: The function 'drawCircle' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:155:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Svg/SvgGraphicDevice.h:88:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Svg/SvgGraphicDevice.h:89:10: style: The function 'drawText' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:169:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Svg/SvgGraphicDevice.h:89:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graphics/Svg/SvgGraphicDevice.h:90:10: style: The function 'comment' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graphics/GraphicDevice.h:176:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graphics/Svg/SvgGraphicDevice.h:90:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.cpp:136:14: style: The scope of the variable 'deb' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.cpp:136:19: style: The scope of the variable 'fin' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.cpp:137:20: style: The scope of the variable 'num' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.cpp:138:14: style: The scope of the variable 'po' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.cpp:138:18: style: The scope of the variable 'pf' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.cpp:138:22: style: The scope of the variable 'ppv' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.cpp:172:27: style: The scope of the variable 'pdd' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.cpp:303:31: style: The scope of the variable 'pd' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.cpp:96:47: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.cpp:194:117: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.cpp:397:9: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterAliasable.h:182:10: performance: Technically the member function 'bpp::ParameterAliasableAdapter::aliasParameters' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterAliasable.h:183:10: performance: Technically the member function 'bpp::ParameterAliasableAdapter::unaliasParameters' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterAliasable.h:184:18: performance: Technically the member function 'bpp::ParameterAliasableAdapter::getNumberOfIndependentParameters' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.h:99:15: performance: Technically the member function 'bpp::InvariantMixedDiscreteDistribution::getName' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/ConstantDistribution.h:87:17: performance: Technically the member function 'bpp::ConstantDistribution::getName' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/SimpleDiscreteDistribution.h:132:15: performance: Technically the member function 'bpp::SimpleDiscreteDistribution::getName' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.h:103:15: performance: Technically the member function 'bpp::MixtureOfDiscreteDistributions::getName' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/GammaDiscreteDistribution.h:69:17: performance: Technically the member function 'bpp::GammaDiscreteDistribution::getName' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/GaussianDiscreteDistribution.h:84:15: performance: Technically the member function 'bpp::GaussianDiscreteDistribution::getName' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/BetaDiscreteDistribution.h:92:17: performance: Technically the member function 'bpp::BetaDiscreteDistribution::getName' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.h:89:15: performance: Technically the member function 'bpp::ExponentialDiscreteDistribution::getName' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.h:109:15: performance: Technically the member function 'bpp::TruncatedExponentialDiscreteDistribution::getName' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/UniformDiscreteDistribution.h:81:17: performance: Technically the member function 'bpp::UniformDiscreteDistribution::getName' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.h:64:3: style: Class 'BppODiscreteDistributionFormat' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:144:3: style: Class 'AbstractParameterAliasable' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:76:7: style: Class 'Order' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/ConstantDistribution.h:69:5: style: Class 'ConstantDistribution' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/AutoParameter.h:83:3: style: Class 'AutoParameter' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Io/IoDiscreteDistribution.h:61:31: style: The function 'getDataType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/IoFormat.h:69:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/IoDiscreteDistribution.h:61:31: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.h:68:21: style: The function 'getFormatName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/IoFormat.h:76:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.h:68:21: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.h:70:21: style: The function 'getFormatDescription' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/IoFormat.h:83:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.h:70:21: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.h:72:25: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/IoDiscreteDistribution.h:83:35: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.h:72:25: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.h:74:45: style: The function 'getUnparsedArguments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/IoDiscreteDistribution.h:90:55: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.h:74:45: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.h:76:8: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/IoDiscreteDistribution.h:115:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/BppODiscreteDistributionFormat.h:76:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:97:22: style: The function 'getId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:98:32: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:97:22: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:103:8: style: The function 'parameterNameChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:105:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:103:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:105:8: style: The function 'parameterValueChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:112:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:105:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:157:8: style: The function 'setNamespace' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:163:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:157:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:161:24: style: The function 'getIndependentParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterAliasable.h:141:35: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:161:24: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:163:10: style: The function 'getNumberOfIndependentParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterAliasable.h:98:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:163:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:165:8: style: The function 'aliasParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterAliasable.h:109:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:165:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:167:8: style: The function 'unaliasParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterAliasable.h:132:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:167:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:179:8: style: The function 'aliasParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterAliasable.h:121:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:179:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:204:36: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterAliasable.h:148:38: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:204:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:211:46: style: The function 'getAliases' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterAliasable.h:155:48: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:211:46: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:226:8: style: The function 'addParameter_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:141:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:226:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:232:8: style: The function 'addParameters_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:147:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:232:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:240:8: style: The function 'includeParameters_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:162:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:240:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:248:8: style: The function 'deleteParameter_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:167:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:248:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:256:8: style: The function 'deleteParameter_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:174:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:256:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:263:8: style: The function 'deleteParameters_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:179:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.h:263:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:156:12: style: The function 'getNumberOfCategories' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:90:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:156:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:157:10: style: The function 'setNumberOfCategories' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:98:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:157:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:158:12: style: The function 'getCategory' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:114:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:158:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:159:12: style: The function 'getProbability' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:120:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:159:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:160:12: style: The function 'getProbability' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:126:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:160:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:161:13: style: The function 'getCategories' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:131:21: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:161:13: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:162:13: style: The function 'getProbabilities' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:135:21: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:162:13: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:163:12: style: The function 'getValueCategory' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:107:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:163:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:164:10: style: The function 'set' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:148:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:164:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:165:10: style: The function 'add' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:161:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:165:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:166:12: style: The function 'getInfCumulativeProbability' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:167:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:166:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:167:12: style: The function 'getIInfCumulativeProbability' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:172:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:167:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:168:12: style: The function 'getSupCumulativeProbability' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:177:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:168:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:169:12: style: The function 'getSSupCumulativeProbability' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:182:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:169:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:170:12: style: The function 'rand' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:192:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:170:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:171:12: style: The function 'randC' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:202:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:171:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:178:12: style: The function 'getBound' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:259:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:178:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:192:12: style: The function 'getLowerBound' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:269:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:192:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:197:12: style: The function 'getUpperBound' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:276:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:197:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:202:10: style: The function 'strictLowerBound' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:283:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:202:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:207:10: style: The function 'strictUpperBound' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:290:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:207:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:212:13: style: The function 'getBounds' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:254:21: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:212:13: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:214:10: style: The function 'print' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:313:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:214:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:218:10: style: The function 'setMedian' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:243:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:218:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:225:18: style: The function 'discretize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:249:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:225:18: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:238:18: style: The function 'restrictToConstraint' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DiscreteDistribution.h:306:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:238:18: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.h:147:8: style: The function 'discretize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:225:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.h:147:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.h:153:8: style: The function 'restrictToConstraint' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:238:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.h:153:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/ConstantDistribution.h:99:10: style: The function 'restrictToConstraint' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:238:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/ConstantDistribution.h:99:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/ConstantDistribution.h:101:10: style: The function 'discretize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:225:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/ConstantDistribution.h:101:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/SimpleDiscreteDistribution.h:134:8: style: The function 'discretize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:225:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/SimpleDiscreteDistribution.h:134:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/SimpleDiscreteDistribution.h:152:8: style: The function 'restrictToConstraint' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:238:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/SimpleDiscreteDistribution.h:152:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.h:151:8: style: The function 'restrictToConstraint' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:238:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.h:151:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.h:153:8: style: The function 'discretize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:225:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.h:153:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.h:147:8: style: The function 'restrictToConstraint' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:238:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.h:147:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AutoParameter.h:119:16: style: The function 'setValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:203:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/AutoParameter.h:119:16: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/IoParametrizable.h:62:31: style: The function 'getDataType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/IoFormat.h:69:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/IoParametrizable.h:62:31: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/BppOParametrizableFormat.h:64:23: style: The function 'getFormatName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/IoFormat.h:76:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/BppOParametrizableFormat.h:64:23: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/BppOParametrizableFormat.h:66:23: style: The function 'getFormatDescription' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/IoFormat.h:83:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/BppOParametrizableFormat.h:66:23: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/BppOParametrizableFormat.h:79:10: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/IoParametrizable.h:86:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/BppOParametrizableFormat.h:79:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Io/BppOParametrizableFormat.h:98:10: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Io/IoParametrizable.h:104:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Io/BppOParametrizableFormat.h:98:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.cpp:57:8: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.cpp:84:8: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.cpp:107:8: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.cpp:182:67: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.cpp:241:8: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.cpp:260:8: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.cpp:283:8: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.cpp:305:8: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.cpp:323:10: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.cpp:344:8: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.cpp:364:8: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.cpp:382:10: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.cpp:202:27: error: Iterator 'it' used after element has been erased. [eraseDereference]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.cpp:182:5: note: Iterator 'it' used after element has been erased.
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParameterAliasable.cpp:202:27: note: Iterator 'it' used after element has been erased.
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/MatrixTools.h:1270:12: style: The scope of the variable 'unassignedFound' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/MatrixTools.h:1271:17: style: The scope of the variable 'iMin' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/MatrixTools.h:1272:27: style: The scope of the variable 'previousNumFree' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/MatrixTools.h:1272:50: style: The scope of the variable 'freeRow' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/MatrixTools.h:1276:42: style: The scope of the variable 'low' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/MatrixTools.h:1276:47: style: The scope of the variable 'up' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/EigenValue.h:339:19: style: Variable 'iter' is assigned a value that is never used. [unreadVariable]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/MatrixTools.h:615:27: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/MatrixTools.h:647:28: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/MatrixTools.h:675:25: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/MatrixTools.h:701:26: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/MatrixTools.h:1318:20: warning: Passing value 0 to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/MatrixTools.h:1347:42: warning: Passing value 0 to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/AdaptiveKernelDensityEstimation.h:105:10: performance: Technically the member function 'bpp::AdaptiveKernelDensityEstimation::sampleMean_' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/AdaptiveKernelDensityEstimation.cpp:100:39: note: Technically the member function 'bpp::AdaptiveKernelDensityEstimation::sampleMean_' can be static.
bpp-core-2.4.0/src/Bpp/Numeric/AdaptiveKernelDensityEstimation.h:105:10: note: Technically the member function 'bpp::AdaptiveKernelDensityEstimation::sampleMean_' can be static.
bpp-core-2.4.0/src/Bpp/Numeric/AdaptiveKernelDensityEstimation.h:116:12: style: Technically the member function 'bpp::AdaptiveKernelDensityEstimation::kernel_' can be const. [functionConst]
bpp-core-2.4.0/src/Bpp/Numeric/AdaptiveKernelDensityEstimation.cpp:114:41: note: Technically the member function 'bpp::AdaptiveKernelDensityEstimation::kernel_' can be const.
bpp-core-2.4.0/src/Bpp/Numeric/AdaptiveKernelDensityEstimation.h:116:12: note: Technically the member function 'bpp::AdaptiveKernelDensityEstimation::kernel_' can be const.
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/LUDecomposition.h:195:3: style: Class 'LUDecomposition' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/EigenValue.h:1110:5: style: Class 'EigenValue' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/EigenValue.h:596:9: warning: Either the condition 'i<low' is redundant, otherwise there is negative array index -1. [negativeContainerIndex]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/EigenValue.h:594:14: note: Assuming that condition 'i<low' is not redundant
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/EigenValue.h:596:9: note: Negative array index
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/EigenValue.h:597:9: warning: Either the condition 'i<low' is redundant, otherwise there is negative array index -1. [negativeContainerIndex]
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/EigenValue.h:594:14: note: Assuming that condition 'i<low' is not redundant
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/EigenValue.h:597:9: note: Negative array index
bpp-core-2.4.0/src/Bpp/Numeric/AutoParameter.cpp:64:47: style: Function 'AutoParameter' argument 1 names different: declaration 'param' definition 'p'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Numeric/AutoParameter.h:83:34: note: Function 'AutoParameter' argument 1 names different: declaration 'param' definition 'p'.
bpp-core-2.4.0/src/Bpp/Numeric/AutoParameter.cpp:64:47: note: Function 'AutoParameter' argument 1 names different: declaration 'param' definition 'p'.
bpp-core-2.4.0/src/Bpp/Numeric/AutoParameter.cpp:66:51: style: Function 'AutoParameter' argument 1 names different: declaration 'param' definition 'p'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Numeric/AutoParameter.h:90:38: note: Function 'AutoParameter' argument 1 names different: declaration 'param' definition 'p'.
bpp-core-2.4.0/src/Bpp/Numeric/AutoParameter.cpp:66:51: note: Function 'AutoParameter' argument 1 names different: declaration 'param' definition 'p'.
bpp-core-2.4.0/src/Bpp/Numeric/AutoParameter.cpp:68:62: style: Function 'operator=' argument 1 names different: declaration 'param' definition 'p'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Numeric/AutoParameter.h:97:49: note: Function 'operator=' argument 1 names different: declaration 'param' definition 'p'.
bpp-core-2.4.0/src/Bpp/Numeric/AutoParameter.cpp:68:62: note: Function 'operator=' argument 1 names different: declaration 'param' definition 'p'.
bpp-core-2.4.0/src/Bpp/Numeric/DataTable.cpp:289:35: style: Function 'setRowName' argument 1 names different: declaration 'rowIndex' definition 'rowId'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Numeric/DataTable.h:333:26: note: Function 'setRowName' argument 1 names different: declaration 'rowIndex' definition 'rowId'.
bpp-core-2.4.0/src/Bpp/Numeric/DataTable.cpp:289:35: note: Function 'setRowName' argument 1 names different: declaration 'rowIndex' definition 'rowId'.
bpp-core-2.4.0/src/Bpp/Numeric/DataTable.cpp:109:23: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-core-2.4.0/src/Bpp/Numeric/TableExceptions.h:106:5: style: Class 'NoTableRowNamesException' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/TableExceptions.h:119:5: style: Class 'NoTableColumnNamesException' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/TableExceptions.h:131:5: style: Class 'TableRowNamesException' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/TableExceptions.h:143:5: style: Class 'TableColumnNamesException' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/TableExceptions.h:155:5: style: Class 'DuplicatedTableRowNameException' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/TableExceptions.h:167:5: style: Class 'DuplicatedTableColumnNameException' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/DataTable.h:95:3: style: Class 'DataTable' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/DataTable.h:103:3: style: Class 'DataTable' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/DataTable.h:109:14: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Clonable.h:109:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/DataTable.h:109:14: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:157:5: style: Class 'AbstractOptimizationStopCondition' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:239:5: style: Class 'ParametersStopCondition' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:284:5: style: Class 'FunctionStopCondition' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:65:5: style: Class 'OptimizationEvent' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:374:5: style: Class 'BackupListener' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:74:33: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Clonable.h:109:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:74:33: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:199:22: style: The function 'getOptimizer' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:81:30: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:199:22: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:200:10: style: The function 'setOptimizer' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:87:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:200:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:201:10: style: The function 'setTolerance' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:110:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:201:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:202:12: style: The function 'getTolerance' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:117:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:202:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:203:10: style: The function 'init' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:92:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:203:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:249:10: style: The function 'init' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:92:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:249:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:251:10: style: The function 'isToleranceReached' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:103:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:251:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:253:12: style: The function 'getCurrentTolerance' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:127:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:253:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:294:10: style: The function 'init' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:92:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:294:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:295:10: style: The function 'isToleranceReached' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:103:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:295:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:296:12: style: The function 'getCurrentTolerance' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:127:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:296:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:132:16: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Clonable.h:109:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:132:16: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:380:10: style: The function 'optimizationInitializationPerformed' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:107:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:380:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:382:10: style: The function 'optimizationStepPerformed' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:108:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:382:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:392:10: style: The function 'listenerModifiesParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:112:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:392:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:176:10: style: The function 'init' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:142:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:176:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:182:12: style: The function 'step' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:155:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:182:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:188:12: style: The function 'optimize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:181:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:188:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:189:10: style: The function 'isInitialized' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:147:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:189:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:190:26: style: The function 'getParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:160:34: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:190:26: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:191:10: style: The function 'getParameterValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:166:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:191:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:192:10: style: The function 'setFunction' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:188:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:192:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:197:21: style: The function 'getFunction' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:195:29: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:197:21: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:198:15: style: The function 'getFunction' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:202:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:198:15: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:199:10: style: The function 'hasFunction' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:209:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:199:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:200:12: style: The function 'getFunctionValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:173:22: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:200:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:206:10: style: The function 'setMessageHandler' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:222:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:206:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:207:19: style: The function 'getMessageHandler' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:227:27: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:207:19: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:208:10: style: The function 'setProfiler' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:240:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:208:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:209:19: style: The function 'getProfiler' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:245:27: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:209:19: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:211:18: style: The function 'getNumberOfEvaluations' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:253:26: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:211:18: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:212:10: style: The function 'setStopCondition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:261:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:212:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:216:32: style: The function 'getStopCondition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:268:40: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:216:32: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:217:38: style: The function 'getStopCondition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:275:46: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:217:38: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:218:32: style: The function 'getDefaultStopCondition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:282:40: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:218:32: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:219:38: style: The function 'getDefaultStopCondition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:289:46: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:219:38: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:220:10: style: The function 'isToleranceReached' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:297:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:220:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:221:10: style: The function 'isMaximumNumberOfEvaluationsReached' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:304:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:221:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:222:10: style: The function 'setMaximumNumberOfEvaluations' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:311:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:222:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:223:10: style: The function 'setVerbose' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:325:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:223:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:224:18: style: The function 'getVerbose' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:332:26: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:224:18: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:225:10: style: The function 'setConstraintPolicy' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:339:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:225:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:226:17: style: The function 'getConstraintPolicy' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:346:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:226:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:227:10: style: The function 'addOptimizationListener' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:356:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:227:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/BfgsMultiDimensions.h:116:10: style: Technically the member function 'bpp::BfgsMultiDimensions::setDirection' can be const. [functionConst]
bpp-core-2.4.0/src/Bpp/Numeric/Function/BfgsMultiDimensions.cpp:267:27: note: Technically the member function 'bpp::BfgsMultiDimensions::setDirection' can be const.
bpp-core-2.4.0/src/Bpp/Numeric/Function/BfgsMultiDimensions.h:116:10: note: Technically the member function 'bpp::BfgsMultiDimensions::setDirection' can be const.
bpp-core-2.4.0/src/Bpp/Numeric/Function/DirectionFunction.h:65:5: style: Class 'DirectionFunction' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/BfgsMultiDimensions.h:77:5: style: Class 'BfgsMultiDimensions' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/DirectionFunction.h:92:10: style: The function 'setParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:100:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DirectionFunction.h:92:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DirectionFunction.h:93:12: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:108:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DirectionFunction.h:93:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DirectionFunction.h:94:27: style: The function 'getParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:81:32: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DirectionFunction.h:94:27: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DirectionFunction.h:108:12: style: The function 'getNumberOfParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:155:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DirectionFunction.h:108:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/BfgsMultiDimensions.h:98:10: style: The function 'doInit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:274:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/BfgsMultiDimensions.h:98:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/BfgsMultiDimensions.h:100:12: style: The function 'doStep' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:281:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/BfgsMultiDimensions.h:100:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/BrentOneDimension.h:88:3: style: Class 'BrentOneDimension' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/BrentOneDimension.h:66:5: style: Class 'BODStopCondition' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/BrentOneDimension.h:112:12: style: The function 'optimize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:181:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/BrentOneDimension.h:112:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/BrentOneDimension.h:115:10: style: The function 'doInit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:274:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/BrentOneDimension.h:115:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/BrentOneDimension.h:117:12: style: The function 'doStep' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:281:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/BrentOneDimension.h:117:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/BrentOneDimension.h:76:10: style: The function 'isToleranceReached' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:103:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/BrentOneDimension.h:76:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/BrentOneDimension.h:77:12: style: The function 'getCurrentTolerance' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:127:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/BrentOneDimension.h:77:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ConjugateGradientMultiDimensions.h:71:5: style: Class 'ConjugateGradientMultiDimensions' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/ConjugateGradientMultiDimensions.h:92:10: style: The function 'doInit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:274:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ConjugateGradientMultiDimensions.h:92:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ConjugateGradientMultiDimensions.h:94:12: style: The function 'doStep' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:281:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ConjugateGradientMultiDimensions.h:94:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DirectionFunction.cpp:48:61: style: Function 'setParameters' argument 1 names different: declaration 'parameters' definition 'params'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Numeric/Function/DirectionFunction.h:92:45: note: Function 'setParameters' argument 1 names different: declaration 'parameters' definition 'params'.
bpp-core-2.4.0/src/Bpp/Numeric/Function/DirectionFunction.cpp:48:61: note: Function 'setParameters' argument 1 names different: declaration 'parameters' definition 'params'.
bpp-core-2.4.0/src/Bpp/Numeric/Function/DownhillSimplexMethod.h:114:5: style: Class 'DownhillSimplexMethod' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/DownhillSimplexMethod.h:71:9: style: Class 'DSMStopCondition' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/DownhillSimplexMethod.h:131:12: style: The function 'optimize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:181:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DownhillSimplexMethod.h:131:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DownhillSimplexMethod.h:134:10: style: The function 'doInit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:274:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DownhillSimplexMethod.h:134:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DownhillSimplexMethod.h:136:12: style: The function 'doStep' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:281:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DownhillSimplexMethod.h:136:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DownhillSimplexMethod.h:78:14: style: The function 'isToleranceReached' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:103:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DownhillSimplexMethod.h:78:14: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DownhillSimplexMethod.h:79:16: style: The function 'getCurrentTolerance' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:127:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/DownhillSimplexMethod.h:79:16: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/FivePointsNumericalDerivative.h:123:10: performance: Technically the member function 'bpp::FivePointsNumericalDerivative::getSecondOrderDerivative' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Function/FivePointsNumericalDerivative.h:92:3: style: Class 'FivePointsNumericalDerivative' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/FivePointsNumericalDerivative.h:99:3: style: Class 'FivePointsNumericalDerivative' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/FivePointsNumericalDerivative.h:106:3: style: Class 'FivePointsNumericalDerivative' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:159:10: style: The function 'enableFirstOrderDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:145:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:159:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:160:10: style: The function 'enableFirstOrderDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:152:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:160:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:162:12: style: The function 'getFirstOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:161:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:162:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:181:10: style: The function 'enableSecondOrderDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:201:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:181:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:182:10: style: The function 'enableSecondOrderDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:208:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:182:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:184:12: style: The function 'getSecondOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:217:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:184:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:196:12: style: The function 'getSecondOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:243:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:196:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:215:12: style: The function 'f' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:117:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:215:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:220:10: style: The function 'setParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:100:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:220:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:225:10: style: The function 'setAllParametersValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:112:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:225:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:231:10: style: The function 'setParameterValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:123:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:231:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:237:10: style: The function 'setParametersValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:135:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:237:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:243:10: style: The function 'matchParametersValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:147:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:243:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/FivePointsNumericalDerivative.h:129:8: style: The function 'updateDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:261:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/FivePointsNumericalDerivative.h:129:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:261:56: performance: Function parameter 'parameters' should be passed by const reference. [passedByValue]
bpp-core-2.4.0/src/Bpp/Numeric/Function/FivePointsNumericalDerivative.cpp:44:75: performance: Function parameter 'parameters' should be passed by const reference. [passedByValue]
bpp-core-2.4.0/src/Bpp/Numeric/Function/GoldenSectionSearch.h:87:3: style: Class 'GoldenSectionSearch' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/GoldenSectionSearch.h:67:5: style: Class 'GSSStopCondition' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/GoldenSectionSearch.h:111:10: style: The function 'getFunctionValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:173:22: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/GoldenSectionSearch.h:111:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/GoldenSectionSearch.h:114:10: style: The function 'doInit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:274:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/GoldenSectionSearch.h:114:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/GoldenSectionSearch.h:116:10: style: The function 'doStep' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:281:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/GoldenSectionSearch.h:116:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/GoldenSectionSearch.h:74:10: style: The function 'isToleranceReached' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:103:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/GoldenSectionSearch.h:74:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/GoldenSectionSearch.h:75:16: style: The function 'getCurrentTolerance' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:127:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/GoldenSectionSearch.h:75:16: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/MetaOptimizer.h:103:25: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Clonable.h:109:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/MetaOptimizer.h:103:25: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/MetaOptimizer.h:220:10: style: The function 'setFunction' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:188:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/MetaOptimizer.h:220:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/MetaOptimizer.h:227:10: style: The function 'doInit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:274:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/MetaOptimizer.h:227:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/MetaOptimizer.h:229:12: style: The function 'doStep' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:281:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/MetaOptimizer.h:229:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/NewtonBacktrackOneDimension.h:75:7: style: Class 'NBODStopCondition' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/NewtonBacktrackOneDimension.h:109:10: style: The function 'doInit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:274:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/NewtonBacktrackOneDimension.h:109:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/NewtonBacktrackOneDimension.h:111:12: style: The function 'doStep' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:281:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/NewtonBacktrackOneDimension.h:111:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/NewtonBacktrackOneDimension.h:82:12: style: The function 'init' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:92:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/NewtonBacktrackOneDimension.h:82:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/NewtonBacktrackOneDimension.h:83:12: style: The function 'isToleranceReached' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:103:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/NewtonBacktrackOneDimension.h:83:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/NewtonBacktrackOneDimension.h:84:14: style: The function 'getCurrentTolerance' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:127:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/NewtonBacktrackOneDimension.h:84:14: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/NewtonOneDimension.h:59:3: style: Class 'NewtonOneDimension' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/NewtonOneDimension.h:75:10: style: The function 'doInit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:274:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/NewtonOneDimension.h:75:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/NewtonOneDimension.h:77:12: style: The function 'doStep' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:281:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/NewtonOneDimension.h:77:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/OneDimensionOptimizationTools.cpp:226:10: style: The scope of the variable 'x' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OneDimensionOptimizationTools.cpp:226:13: style: The scope of the variable 'temp' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OneDimensionOptimizationTools.cpp:52:38: style: Function 'set' argument 1 names different: declaration 'x' definition 'xval'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OneDimensionOptimizationTools.h:64:19: note: Function 'set' argument 1 names different: declaration 'x' definition 'xval'.
bpp-core-2.4.0/src/Bpp/Numeric/Function/OneDimensionOptimizationTools.cpp:52:38: note: Function 'set' argument 1 names different: declaration 'x' definition 'xval'.
bpp-core-2.4.0/src/Bpp/Numeric/Function/OneDimensionOptimizationTools.cpp:52:51: style: Function 'set' argument 2 names different: declaration 'f' definition 'fval'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OneDimensionOptimizationTools.h:64:29: note: Function 'set' argument 2 names different: declaration 'f' definition 'fval'.
bpp-core-2.4.0/src/Bpp/Numeric/Function/OneDimensionOptimizationTools.cpp:52:51: note: Function 'set' argument 2 names different: declaration 'f' definition 'fval'.
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:271:67: style: Function 'getFather' argument 1 names different: declaration 'nodeid' definition 'node'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:119:43: note: Function 'getFather' argument 1 names different: declaration 'nodeid' definition 'node'.
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:271:67: note: Function 'getFather' argument 1 names different: declaration 'nodeid' definition 'node'.
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:307:112: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:480:94: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:590:94: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:600:120: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:250:50: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:267:50: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:298:50: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:315:50: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:348:50: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:364:159: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:626:105: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:652:105: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:727:113: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:750:113: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1033:129: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1049:129: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1069:125: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1086:143: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1099:143: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1112:143: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1204:139: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1277:127: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1295:127: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1343:143: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/FunctionOperator.h:69:12: performance: Technically the member function 'bpp::FunctionOperator::getValue_' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/FunctionOperator.h:79:12: performance: Technically the member function 'bpp::FunctionOperator::getFirstOrderDerivative_' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/FunctionOperator.h:89:12: performance: Technically the member function 'bpp::FunctionOperator::getSecondOrderDerivative_' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:98:5: style: Class 'TreeGraphImpl' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:199:3: style: Class 'AssociationGraphImplObserver' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:218:3: style: Class 'AssociationGraphImplObserver' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:842:5: style: Class 'NodeIteratorClass' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1132:5: style: Class 'EdgeIteratorClass' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:73:3: style: Class 'AssociationTreeGraphImplObserver' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:82:3: style: Class 'AssociationTreeGraphImplObserver' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/ConstantOperator.h:62:5: style: Class 'ConstantOperator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/NegativeOperator.h:61:5: style: Class 'NegativeOperator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:91:16: style: The function 'isLeaf' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/Graph.h:289:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:91:16: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:104:10: style: The function 'isValid' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:65:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:104:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:119:19: style: The function 'getFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:72:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:119:19: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:126:19: style: The function 'getEdgeToFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:79:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:126:19: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:132:10: style: The function 'hasFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:85:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:132:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:138:10: style: The function 'isLeaf' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:91:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:138:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:146:32: style: The function 'getLeavesUnderNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:99:38: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:146:32: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:152:32: style: The function 'getSons' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:105:38: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:152:32: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:158:32: style: The function 'getBranches' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:111:38: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:158:32: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:164:42: style: The function 'sonsIterator' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:117:48: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:164:42: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:166:42: style: The function 'sonsIterator' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:119:48: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:166:42: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:172:42: style: The function 'branchesIterator' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:125:48: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:172:42: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:174:42: style: The function 'branchesIterator' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:127:48: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:174:42: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:180:12: style: The function 'getNumberOfSons' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:133:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:180:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:186:10: style: The function 'setFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:139:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:186:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:187:10: style: The function 'setFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:141:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:187:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:193:10: style: The function 'addSon' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:147:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:193:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:195:10: style: The function 'addSon' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:149:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:195:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:207:10: style: The function 'removeSon' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:161:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:207:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:213:10: style: The function 'rootAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:167:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:213:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:221:10: style: The function 'unRoot' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:175:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:221:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:228:10: style: The function 'setOutGroup' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:182:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:228:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:234:32: style: The function 'getSubtreeNodes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:188:38: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:234:32: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:240:32: style: The function 'getSubtreeEdges' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:194:38: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:240:32: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:245:32: style: The function 'getNodePathBetweenTwoNodes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:199:38: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:245:32: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:246:32: style: The function 'getEdgePathBetweenTwoNodes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/TreeGraph.h:200:38: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/TreeGraphImpl.h:246:32: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:431:8: style: The function 'createNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:110:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:431:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:448:8: style: The function 'createNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:122:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:448:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:463:8: style: The function 'link' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:133:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:463:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:489:8: style: The function 'unlink' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:142:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:489:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:506:8: style: The function 'deleteNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:148:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:506:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:527:8: style: The function 'associateNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:163:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:527:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:547:8: style: The function 'associateEdge' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:171:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:547:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:566:8: style: The function 'dissociateNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:180:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:566:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:574:8: style: The function 'dissociateEdge' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:181:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:574:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:587:15: style: The function 'getNodeGraphid' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:189:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:587:15: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:601:15: style: The function 'getEdgeGraphid' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:196:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:601:15: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:613:23: style: The function 'getNodeFromGraphid' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:202:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:613:23: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:618:28: style: The function 'getNodeFromGraphid' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:201:37: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:618:28: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:623:36: style: The function 'getNodesFromGraphid' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:204:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:623:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:638:22: style: The function 'getEdgeFromGraphid' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:205:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:638:22: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:643:28: style: The function 'getEdgeFromGraphid' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:206:37: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:643:28: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:649:36: style: The function 'getEdgesFromGraphid' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:207:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:649:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:677:22: style: The function 'getRoot' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:214:30: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:677:22: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:698:8: style: The function 'hasIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:230:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:698:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:704:8: style: The function 'hasIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:231:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:704:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:914:36: style: The function 'getNeighbors' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:340:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:914:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:930:36: style: The function 'getEdges' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:348:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:930:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:947:36: style: The function 'getOutgoingNeighbors' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:357:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:947:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:963:36: style: The function 'getOutgoingEdges' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:366:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:963:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:980:36: style: The function 'getIncomingNeighbors' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:376:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:980:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:998:36: style: The function 'getIncomingEdges' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:385:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:998:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1017:36: style: The function 'getLeavesFromNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:396:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1017:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1027:36: style: The function 'getAllLeaves' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:402:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1027:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1063:44: style: The function 'getAllInnerNodes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:409:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1063:44: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1083:36: style: The function 'getAllNodes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:415:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1083:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1201:36: style: The function 'getAllEdges' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:462:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1201:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1247:23: style: The function 'getEdgeLinking' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:472:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1247:23: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1258:8: style: The function 'setEdgeLinking' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:480:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1258:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1275:8: style: The function 'deletedEdgesUpdate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/GraphObserver.h:81:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1275:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1293:8: style: The function 'deletedNodesUpdate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/GraphObserver.h:87:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1293:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:856:10: style: The function 'next' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:299:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:856:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:858:10: style: The function 'end' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:300:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:858:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:860:10: style: The function 'start' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:301:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:860:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:862:24: style: The function 'operator*' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:303:32: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:862:24: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1146:10: style: The function 'next' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:428:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1146:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1148:10: style: The function 'end' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:429:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1148:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1150:10: style: The function 'start' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:430:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1150:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1152:24: style: The function 'operator*' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphObserver.h:432:32: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationGraphImplObserver.h:1152:24: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:136:8: style: The function 'isValid' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:78:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:136:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:146:23: style: The function 'getEdgeToFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:86:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:146:23: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:161:8: style: The function 'rootAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:95:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:161:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:170:8: style: The function 'isRooted' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:102:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:170:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:181:23: style: The function 'getFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:110:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:181:23: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:189:8: style: The function 'hasFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:116:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:189:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:205:36: style: The function 'getSons' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:125:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:205:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:221:36: style: The function 'getBranches' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:135:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:221:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:237:22: style: The function 'getSon' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:145:30: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:237:22: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:253:22: style: The function 'getFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:154:30: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:253:22: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:269:10: style: The function 'getNumberOfSons' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:163:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:269:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:281:36: style: The function 'getLeavesUnderNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:172:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:281:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:292:36: style: The function 'removeSons' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:179:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:292:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:300:8: style: The function 'removeSon' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:185:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:300:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:312:8: style: The function 'setFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:195:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:312:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:328:8: style: The function 'addSon' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:205:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:328:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:381:36: style: The function 'getNodePathBetweenTwoNodes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:249:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:381:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:386:36: style: The function 'getEdgePathBetweenTwoNodes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:251:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:386:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:391:36: style: The function 'getSubtreeNodes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:253:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:391:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:396:36: style: The function 'getSubtreeEdges' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphObserver.h:255:44: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Graph/AssociationTreeGraphImplObserver.h:396:36: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/BinaryOperator.h:78:12: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:59:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/BinaryOperator.h:78:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/BinaryOperator.h:98:12: style: The function 'getFirstOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:61:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/BinaryOperator.h:98:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/BinaryOperator.h:124:12: style: The function 'getSecondOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:63:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/BinaryOperator.h:124:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/BinaryOperator.h:156:17: style: The function 'output' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:65:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/BinaryOperator.h:156:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/FunctionOperator.h:107:12: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:59:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/FunctionOperator.h:107:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/FunctionOperator.h:112:12: style: The function 'getFirstOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:61:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/FunctionOperator.h:112:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/FunctionOperator.h:117:12: style: The function 'getSecondOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:63:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/FunctionOperator.h:117:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/FunctionOperator.h:122:17: style: The function 'output' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:65:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/FunctionOperator.h:122:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/ConstantOperator.h:70:12: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:59:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/ConstantOperator.h:70:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/ConstantOperator.h:75:12: style: The function 'getFirstOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:61:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/ConstantOperator.h:75:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/ConstantOperator.h:80:12: style: The function 'getSecondOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:63:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/ConstantOperator.h:80:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/ConstantOperator.h:85:17: style: The function 'output' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:65:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/ConstantOperator.h:85:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/NegativeOperator.h:71:12: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:59:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/NegativeOperator.h:71:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/NegativeOperator.h:76:12: style: The function 'getFirstOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:61:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/NegativeOperator.h:76:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/NegativeOperator.h:81:12: style: The function 'getSecondOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:63:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/NegativeOperator.h:81:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/NegativeOperator.h:86:17: style: The function 'output' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:65:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/NegativeOperator.h:86:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/MathOperator.h:83:12: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:59:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/MathOperator.h:83:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/MathOperator.h:96:12: style: The function 'getFirstOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:61:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/MathOperator.h:96:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/MathOperator.h:110:12: style: The function 'getSecondOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:63:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/MathOperator.h:110:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/MathOperator.h:126:17: style: The function 'output' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/Operator.h:65:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/MathOperator.h:126:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/ComputationTree.cpp:160:5: style: Exception should be caught by reference. [catchExceptionByValue]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/FunctionOperator.h:97:43: performance: Function parameter 'name' should be passed by const reference. [passedByValue]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Operators/MathOperator.h:72:54: performance: Function parameter 'name' should be passed by const reference. [passedByValue]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.cpp:211:24: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/Function/PowellMultiDimensions.h:91:3: style: Class 'PowellMultiDimensions' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/PowellMultiDimensions.h:67:5: style: Class 'PMDStopCondition' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/PowellMultiDimensions.h:103:10: style: The function 'optimize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:181:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/PowellMultiDimensions.h:103:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/PowellMultiDimensions.h:106:8: style: The function 'doInit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:274:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/PowellMultiDimensions.h:106:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/PowellMultiDimensions.h:108:12: style: The function 'doStep' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:281:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/PowellMultiDimensions.h:108:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/PowellMultiDimensions.h:74:10: style: The function 'isToleranceReached' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:103:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/PowellMultiDimensions.h:74:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/PowellMultiDimensions.h:75:16: style: The function 'getCurrentTolerance' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/OptimizationStopCondition.h:127:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/PowellMultiDimensions.h:75:16: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:152:22: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition]
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:153:22: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition]
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:150:11: style: Boolean variable 'positive_' is used in bitwise operation. Did you mean '&&'? [bitwiseOnBoolean]
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:151:11: style: Boolean variable 'positive_' is used in bitwise operation. Did you mean '&&'? [bitwiseOnBoolean]
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:147:10: style: The function 'setOriginalValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:75:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:147:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:156:12: style: The function 'getOriginalValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:80:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:156:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:167:12: style: The function 'getFirstOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:87:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:167:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:178:12: style: The function 'getSecondOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:94:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:178:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:240:10: style: The function 'setOriginalValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:75:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:240:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:248:12: style: The function 'getOriginalValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:80:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:248:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:258:12: style: The function 'getFirstOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:87:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:258:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:266:12: style: The function 'getSecondOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:94:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:266:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:293:10: style: The function 'setOriginalValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:75:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:293:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:298:12: style: The function 'getOriginalValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:80:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:298:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:303:12: style: The function 'getFirstOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:87:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:303:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:305:12: style: The function 'getSecondOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:94:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/TransformedParameter.h:305:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:120:10: style: The function 'setParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:100:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:120:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:129:12: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:108:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:129:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:134:10: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:135:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:134:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:181:10: style: The function 'enableFirstOrderDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:145:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:181:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:183:10: style: The function 'enableFirstOrderDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:152:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:183:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:185:12: style: The function 'getFirstOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:161:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:185:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:237:10: style: The function 'enableSecondOrderDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:201:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:237:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:239:10: style: The function 'enableSecondOrderDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:208:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:239:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:241:12: style: The function 'getSecondOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:217:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:241:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:249:12: style: The function 'getSecondOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:243:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h:249:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.cpp:190:7: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-core-2.4.0/src/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.cpp:52:18: performance: Use const reference for 'name' to avoid unnecessary data copying. [redundantCopyLocalConst]
bpp-core-2.4.0/src/Bpp/Numeric/Function/SimpleMultiDimensions.h:67:3: style: Class 'SimpleMultiDimensions' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/SimpleMultiDimensions.h:79:8: style: The function 'setFunction' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:188:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/SimpleMultiDimensions.h:79:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/SimpleMultiDimensions.h:82:8: style: The function 'doInit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:274:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/SimpleMultiDimensions.h:82:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/SimpleMultiDimensions.h:84:12: style: The function 'doStep' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:281:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/SimpleMultiDimensions.h:84:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/SimpleNewtonMultiDimensions.h:66:3: style: Class 'SimpleNewtonMultiDimensions' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/SimpleNewtonMultiDimensions.h:78:8: style: The function 'setFunction' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Optimizer.h:188:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/SimpleNewtonMultiDimensions.h:78:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/SimpleNewtonMultiDimensions.h:81:8: style: The function 'doInit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:274:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/SimpleNewtonMultiDimensions.h:81:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/SimpleNewtonMultiDimensions.h:83:10: style: The function 'doStep' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractOptimizer.h:281:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/SimpleNewtonMultiDimensions.h:83:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ThreePointsNumericalDerivative.cpp:59:20: warning: Passing value -1 to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/Function/ThreePointsNumericalDerivative.cpp:60:20: warning: Passing value -1 to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/Function/ThreePointsNumericalDerivative.cpp:158:20: warning: Passing value -1 to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/Function/ThreePointsNumericalDerivative.cpp:159:20: warning: Passing value -1 to log() leads to implementation-defined result. [wrongmathcall]
bpp-core-2.4.0/src/Bpp/Numeric/Function/ThreePointsNumericalDerivative.h:91:3: style: Class 'ThreePointsNumericalDerivative' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/ThreePointsNumericalDerivative.h:100:3: style: Class 'ThreePointsNumericalDerivative' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/ThreePointsNumericalDerivative.h:109:3: style: Class 'ThreePointsNumericalDerivative' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/ThreePointsNumericalDerivative.h:129:8: style: The function 'updateDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:261:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ThreePointsNumericalDerivative.h:129:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/ThreePointsNumericalDerivative.cpp:45:76: performance: Function parameter 'parameters' should be passed by const reference. [passedByValue]
bpp-core-2.4.0/src/Bpp/Numeric/Function/TwoPointsNumericalDerivative.h:101:10: performance: Technically the member function 'bpp::TwoPointsNumericalDerivative::getSecondOrderDerivative' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Function/TwoPointsNumericalDerivative.h:106:10: performance: Technically the member function 'bpp::TwoPointsNumericalDerivative::getSecondOrderDerivative' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Function/TwoPointsNumericalDerivative.h:81:3: style: Class 'TwoPointsNumericalDerivative' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/TwoPointsNumericalDerivative.h:85:3: style: Class 'TwoPointsNumericalDerivative' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Function/TwoPointsNumericalDerivative.h:113:8: style: The function 'updateDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/AbstractNumericalDerivative.h:261:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Function/TwoPointsNumericalDerivative.h:113:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Function/TwoPointsNumericalDerivative.cpp:102:11: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-core-2.4.0/src/Bpp/Numeric/Function/TwoPointsNumericalDerivative.cpp:45:74: performance: Function parameter 'parameters' should be passed by const reference. [passedByValue]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmExceptions.h:59:7: style: Class 'HmmBadStateException' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmExceptions.h:76:7: style: Class 'HmmUnvalidAlphabetException' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmStateAlphabet.h:108:5: style: Class 'StateChangedEvent' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmStateAlphabet.h:112:5: style: Class 'StateChangedEvent' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AbstractHmmTransitionMatrix.h:81:27: style: The function 'getHmmStateAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmTransitionMatrix.h:68:37: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AbstractHmmTransitionMatrix.h:81:27: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AbstractHmmTransitionMatrix.h:92:8: style: The function 'setHmmStateAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmTransitionMatrix.h:75:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AbstractHmmTransitionMatrix.h:92:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AbstractHmmTransitionMatrix.h:98:10: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmTransitionMatrix.h:80:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AbstractHmmTransitionMatrix.h:98:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.cpp:68:105: style: Function 'AutoCorrelationTransitionMatrix' argument 1 names different: declaration 'hptm' definition 'aptm'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.h:73:74: note: Function 'AutoCorrelationTransitionMatrix' argument 1 names different: declaration 'hptm' definition 'aptm'.
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.cpp:68:105: note: Function 'AutoCorrelationTransitionMatrix' argument 1 names different: declaration 'hptm' definition 'aptm'.
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.cpp:75:116: style: Function 'operator=' argument 1 names different: declaration 'hptm' definition 'aptm'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.h:75:85: note: Function 'operator=' argument 1 names different: declaration 'hptm' definition 'aptm'.
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.cpp:75:116: note: Function 'operator=' argument 1 names different: declaration 'hptm' definition 'aptm'.
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.h:86:10: style: The function 'Pij' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmTransitionMatrix.h:89:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.h:86:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.h:97:25: style: The function 'getPij' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmTransitionMatrix.h:96:35: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.h:97:25: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.h:103:30: style: The function 'getEquilibriumFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmTransitionMatrix.h:101:40: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.h:103:30: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.h:111:8: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:135:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.h:111:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.h:98:10: style: The function 'Pij' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmTransitionMatrix.h:89:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.h:98:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.h:109:25: style: The function 'getPij' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmTransitionMatrix.h:96:35: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.h:109:25: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.h:115:30: style: The function 'getEquilibriumFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmTransitionMatrix.h:101:40: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.h:115:30: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.h:123:8: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:135:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.h:123:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:164:10: style: The function 'enableFirstOrderDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:145:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:164:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:166:10: style: The function 'enableFirstOrderDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:152:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:166:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:168:12: style: The function 'getFirstOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:161:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:168:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:170:12: style: The function 'getDLogLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:99:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:170:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:186:10: style: The function 'enableSecondOrderDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:201:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:186:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:188:10: style: The function 'enableSecondOrderDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:208:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:188:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:190:12: style: The function 'getSecondOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:217:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:190:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:192:12: style: The function 'getD2LogLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:101:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:192:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:197:12: style: The function 'getSecondOrderDerivative' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:243:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:197:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:248:25: style: The scope of the variable 'emissions' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:52:10: style: Function 'LogsumHmmLikelihood' argument 4 names different: declaration 'ownsPointers_' definition 'ownsPointers'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:144:12: note: Function 'LogsumHmmLikelihood' argument 4 names different: declaration 'ownsPointers_' definition 'ownsPointers'.
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:52:10: note: Function 'LogsumHmmLikelihood' argument 4 names different: declaration 'ownsPointers_' definition 'ownsPointers'.
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:204:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:281:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:334:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:337:5: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:368:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:369:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:443:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:548:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:237:29: style: The function 'getHmmStateAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:84:37: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:237:29: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:238:23: style: The function 'getHmmStateAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:85:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:238:23: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:240:32: style: The function 'getHmmTransitionMatrix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:87:40: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:240:32: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:241:26: style: The function 'getHmmTransitionMatrix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:88:34: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:241:26: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:243:37: style: The function 'getHmmEmissionProbabilities' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:90:45: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:243:37: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:244:31: style: The function 'getHmmEmissionProbabilities' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:91:39: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:244:31: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:246:10: style: The function 'setBreakPoints' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:124:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:246:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:252:32: style: The function 'getBreakPoints' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:122:40: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:252:32: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:254:10: style: The function 'setParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:100:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:254:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:259:12: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:108:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:259:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:261:12: style: The function 'getLogLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:97:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:261:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:263:12: style: The function 'getLikelihoodForASite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:110:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:263:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:265:12: style: The function 'getDLogLikelihoodForASite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:112:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:265:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:267:12: style: The function 'getD2LogLikelihoodForASite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:114:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:267:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:269:13: style: The function 'getLikelihoodForEachSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:120:21: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:269:13: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:271:10: style: The function 'setNamespace' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:163:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:271:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:273:10: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:135:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:273:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:275:13: style: The function 'getHiddenStatesPosteriorProbabilitiesForASite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:95:21: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:275:13: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:286:10: style: The function 'computeDLikelihood_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:128:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:286:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:291:10: style: The function 'computeD2Likelihood_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:130:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h:291:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:221:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:205:8: performance: Technically the member function 'bpp::LowMemoryRescaledHmmLikelihood::getHiddenStatesPosteriorProbabilities' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:160:27: style: The function 'getHmmStateAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:84:37: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:160:27: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:161:21: style: The function 'getHmmStateAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:85:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:161:21: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:163:30: style: The function 'getHmmTransitionMatrix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:87:40: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:163:30: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:164:24: style: The function 'getHmmTransitionMatrix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:88:34: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:164:24: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:166:35: style: The function 'getHmmEmissionProbabilities' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:90:45: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:166:35: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:167:29: style: The function 'getHmmEmissionProbabilities' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:91:39: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:167:29: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:169:8: style: The function 'setBreakPoints' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:124:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:169:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:174:30: style: The function 'getBreakPoints' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:122:40: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:174:30: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:176:8: style: The function 'setParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:100:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:176:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:181:10: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:108:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:181:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:183:10: style: The function 'getLogLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:97:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:183:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:185:8: style: The function 'setNamespace' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:163:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:185:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:187:8: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:135:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:187:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:189:10: style: The function 'getLikelihoodForASite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:110:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:189:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:195:11: style: The function 'getLikelihoodForEachSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:120:21: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:195:11: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:200:11: style: The function 'getHiddenStatesPosteriorProbabilitiesForASite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:95:21: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:200:11: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:213:8: style: The function 'computeDLikelihood_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:128:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:213:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:218:8: style: The function 'computeD2Likelihood_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:130:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:218:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:223:10: style: The function 'getDLogLikelihoodForASite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:112:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:223:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:229:10: style: The function 'getD2LogLikelihoodForASite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:114:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:229:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp:271:25: style: The scope of the variable 'emissions' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp:226:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp:305:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp:460:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp:570:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:192:29: style: The function 'getHmmStateAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:84:37: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:192:29: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:193:23: style: The function 'getHmmStateAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:85:31: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:193:23: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:195:32: style: The function 'getHmmTransitionMatrix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:87:40: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:195:32: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:196:26: style: The function 'getHmmTransitionMatrix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:88:34: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:196:26: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:198:37: style: The function 'getHmmEmissionProbabilities' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:90:45: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:198:37: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:199:31: style: The function 'getHmmEmissionProbabilities' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:91:39: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:199:31: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:201:10: style: The function 'setBreakPoints' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:124:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:201:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:207:32: style: The function 'getBreakPoints' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:122:40: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:207:32: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:209:10: style: The function 'setParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:100:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:209:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:214:12: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Function/Functions.h:108:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:214:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:216:12: style: The function 'getLogLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:97:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:216:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:218:12: style: The function 'getLikelihoodForASite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:110:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:218:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:220:12: style: The function 'getDLogLikelihoodForASite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:112:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:220:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:222:12: style: The function 'getD2LogLikelihoodForASite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:114:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:222:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:224:13: style: The function 'getLikelihoodForEachSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:120:21: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:224:13: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:226:10: style: The function 'setNamespace' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Parametrizable.h:163:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:226:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:228:10: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/AbstractParametrizable.h:135:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:228:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:230:13: style: The function 'getHiddenStatesPosteriorProbabilitiesForASite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:95:21: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:230:13: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:240:10: style: The function 'computeDLikelihood_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:128:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:240:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:245:10: style: The function 'computeD2Likelihood_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/HmmLikelihood.h:130:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:245:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/NumTools.cpp:57:10: style: The scope of the variable 'fc' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.cpp:73:39: style: Function 'Parameter' argument 1 names different: declaration 'param' definition 'p'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:173:32: note: Function 'Parameter' argument 1 names different: declaration 'param' definition 'p'.
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.cpp:73:39: note: Function 'Parameter' argument 1 names different: declaration 'param' definition 'p'.
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.cpp:91:50: style: Function 'operator=' argument 1 names different: declaration 'param' definition 'p'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:178:43: note: Function 'operator=' argument 1 names different: declaration 'param' definition 'p'.
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.cpp:91:50: note: Function 'operator=' argument 1 names different: declaration 'param' definition 'p'.
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:203:18: warning: Virtual function 'setValue' is called from constructor 'Parameter(const std::string&name,double value,Constraint*constraint,bool attachConstraint,double precision=0)' at line 61. Dynamic binding is not used. [virtualCallInConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.cpp:61:3: note: Calling setValue
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:203:18: note: setValue is a virtual method
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:203:18: warning: Virtual function 'setValue' is called from constructor 'Parameter(const std::string&name,double value,const Constraint*constraint=0,double precision=0)' at line 69. Dynamic binding is not used. [virtualCallInConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.cpp:69:3: note: Calling setValue
bpp-core-2.4.0/src/Bpp/Numeric/Parameter.h:203:18: note: setValue is a virtual method
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.cpp:233:20: style: The scope of the variable 'pos2' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.cpp:342:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.cpp:350:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.cpp:362:119: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.cpp:374:121: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.cpp:390:119: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.cpp:403:119: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.cpp:420:119: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.cpp:434:119: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.cpp:454:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.cpp:464:119: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.cpp:486:119: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.cpp:545:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.h:429:16: warning: Virtual function 'reset' is called from destructor '~ParameterList()' at line 82. Dynamic binding is not used. [virtualCallInConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.cpp:82:3: note: Calling reset
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.h:429:16: note: reset is a virtual method
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.cpp:409:0: warning: Result of operator '|' is always true if one operand is non-zero. Did you intend to use '&'? [badBitmaskCheck]
bpp-core-2.4.0/src/Bpp/Numeric/ParameterList.cpp:440:0: warning: Result of operator '|' is always true if one operand is non-zero. Did you intend to use '&'? [badBitmaskCheck]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp:353:59: style: The scope of the variable 'b' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp:98:17: style: Checking if unsigned variable 'nbClasses' is less than zero. This might be a false warning. [unsignedLessThanZero]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp:58:85: style: Function 'AbstractDiscreteDistribution' argument 2 names different: declaration 'precision' definition 'delta'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:140:59: note: Function 'AbstractDiscreteDistribution' argument 2 names different: declaration 'precision' definition 'delta'.
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp:58:85: note: Function 'AbstractDiscreteDistribution' argument 2 names different: declaration 'precision' definition 'delta'.
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp:116:5: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp:128:5: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp:148:8: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp:164:8: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp:203:8: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp:221:8: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp:238:8: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp:255:8: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp:270:8: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp:281:97: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp:299:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp:118:10: style: The scope of the variable 'x' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp:252:10: style: The scope of the variable 'x' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp:269:10: style: The scope of the variable 'x' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp:59:17: style: Checking if unsigned variable 'vn.size()' is less than zero. This might be a false warning. [unsignedLessThanZero]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp:69:15: style: Checking if unsigned variable 'vn[j]' is less than zero. This might be a false warning. [unsignedLessThanZero]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp:154:66: style: Function 'getValueCategory' argument 1 names different: declaration 'Vvalue' definition 'value'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.h:143:37: note: Function 'getValueCategory' argument 1 names different: declaration 'Vvalue' definition 'value'.
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp:154:66: note: Function 'getValueCategory' argument 1 names different: declaration 'Vvalue' definition 'value'.
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.h:128:15: performance: Technically the member function 'bpp::DirichletDiscreteDistribution::getName' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.h:135:10: style: The function 'getNumberOfCategories' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/MultipleDiscreteDistribution.h:83:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.h:135:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.h:143:11: style: The function 'getValueCategory' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/MultipleDiscreteDistribution.h:92:21: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.h:143:11: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.h:151:18: style: The function 'getProbability' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/MultipleDiscreteDistribution.h:98:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.h:151:18: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.h:162:11: style: The function 'rand' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/MultipleDiscreteDistribution.h:111:21: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.h:162:11: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.h:170:11: style: The function 'randC' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/MultipleDiscreteDistribution.h:121:21: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.h:170:11: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp:114:7: style: Condition 'nv' is always true [knownConditionTrueFalse]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp:111:13: note: Assignment 'nv=true', assigned value is 1
bpp-core-2.4.0/src/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp:114:7: note: Condition 'nv' is always true
bpp-core-2.4.0/src/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp:113:37: style: The scope of the variable 'b' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.h:143:10: performance: Technically the member function 'bpp::MixtureOfDiscreteDistributions::qProb' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp:279:40: note: Technically the member function 'bpp::MixtureOfDiscreteDistributions::qProb' can be static.
bpp-core-2.4.0/src/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.h:143:10: note: Technically the member function 'bpp::MixtureOfDiscreteDistributions::qProb' can be static.
bpp-core-2.4.0/src/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp:56:95: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp:68:97: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp:258:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp:273:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp:287:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp:323:63: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/UniformDiscreteDistribution.h:83:10: performance: Technically the member function 'bpp::UniformDiscreteDistribution::fireParameterChanged' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp:84:35: note: Technically the member function 'bpp::UniformDiscreteDistribution::fireParameterChanged' can be static.
bpp-core-2.4.0/src/Bpp/Numeric/Prob/UniformDiscreteDistribution.h:83:10: note: Technically the member function 'bpp::UniformDiscreteDistribution::fireParameterChanged' can be static.
bpp-core-2.4.0/src/Bpp/Numeric/Matrix/Matrix.h:146:0: style: Class 'bpp :: RowMatrix < unsigned long >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.cpp:104:10: style: The scope of the variable 'r' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.cpp:105:10: style: The scope of the variable 'cumprob' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.cpp:515:27: style: The scope of the variable 'g' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.cpp:515:30: style: The scope of the variable 'h' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.cpp:515:50: style: The scope of the variable 's' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.cpp:515:60: style: The scope of the variable 'w' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.cpp:758:10: style: The scope of the variable 'xk' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.cpp:759:10: style: The scope of the variable 'pk' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.cpp:762:10: style: The scope of the variable 'qk' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.cpp:872:10: style: The scope of the variable 'xk' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.cpp:873:10: style: The scope of the variable 'pk' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.cpp:876:10: style: The scope of the variable 'qk' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.cpp:358:34: style: Function 'pNorm' argument 1 names different: declaration 'z' definition 'x'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.h:496:32: note: Function 'pNorm' argument 1 names different: declaration 'z' definition 'x'.
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.cpp:358:34: note: Function 'pNorm' argument 1 names different: declaration 'z' definition 'x'.
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.cpp:364:34: style: Function 'pNorm' argument 1 names different: declaration 'z' definition 'x'. [funcArgNamesDifferent]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.h:484:32: note: Function 'pNorm' argument 1 names different: declaration 'z' definition 'x'.
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomTools.cpp:364:34: note: Function 'pNorm' argument 1 names different: declaration 'z' definition 'x'.
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01K.h:67:3: style: Class 'Uniform01K' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01K.h:78:8: style: The function 'setSeed' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomFactory.h:61:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01K.h:78:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01K.h:83:10: style: The function 'drawNumber' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomFactory.h:66:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01K.h:83:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01K.cpp:66:20: style: The scope of the variable 'ii' can be reduced. [variableScope]
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01QD.h:66:3: style: Class 'Uniform01QD' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01QD.h:77:8: style: The function 'setSeed' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomFactory.h:61:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01QD.h:77:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01QD.h:82:10: style: The function 'drawNumber' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomFactory.h:66:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01QD.h:82:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01WH.h:80:8: style: Technically the member function 'bpp::Uniform01WH::setSeeds' can be const. [functionConst]
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01WH.h:64:3: style: Class 'Uniform01WH' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01WH.h:75:8: style: The function 'setSeed' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomFactory.h:61:16: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01WH.h:75:8: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01WH.h:88:10: style: The function 'drawNumber' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Random/RandomFactory.h:66:18: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Random/Uniform01WH.h:88:10: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Stat/ContingencyTableTest.h:80:17: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Stat/StatTest.h:64:25: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Stat/ContingencyTableTest.h:80:17: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Stat/ContingencyTableTest.h:81:12: style: The function 'getStatistic' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Stat/StatTest.h:65:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Stat/ContingencyTableTest.h:81:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Stat/ContingencyTableTest.h:82:12: style: The function 'getPValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Numeric/Stat/StatTest.h:66:20: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Stat/ContingencyTableTest.h:82:12: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Stat/Mva/DualityDiagram.h:109:19: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-core-2.4.0/src/Bpp/Clonable.h:109:23: note: Virtual function in base class
bpp-core-2.4.0/src/Bpp/Numeric/Stat/Mva/DualityDiagram.h:109:19: note: Function in derived class
bpp-core-2.4.0/src/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp:167:15: style: Checking if unsigned variable 'nbAxes_' is less than zero. This might be a false warning. [unsignedLessThanZero]
bpp-core-2.4.0/src/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp:85:88: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp:92:88: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp:189:84: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp:195:84: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Numeric/Stat/Mva/DualityDiagram.h:112:8: performance: Technically the member function 'bpp::DualityDiagram::check_' can be static. [functionStatic]
bpp-core-2.4.0/src/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp:70:22: note: Technically the member function 'bpp::DualityDiagram::check_' can be static.
bpp-core-2.4.0/src/Bpp/Numeric/Stat/Mva/DualityDiagram.h:112:8: note: Technically the member function 'bpp::DualityDiagram::check_' can be static.
bpp-core-2.4.0/src/Bpp/Text/KeyvalTools.cpp:89:74: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Text/KeyvalTools.cpp:152:74: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Utils/AttributesTools.cpp:163:79: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-core-2.4.0/src/Bpp/Utils/AttributesTools.cpp:179:71: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
cppcheck-head: build/templatesimplifier.cpp:2864: static bool TemplateSimplifier::simplifyTemplateInstantiations(TokenList&, ErrorLogger*, const Settings*, const TemplateSimplifier::TokenAndName&, const std::list<const Token*>&, time_t, std::list<TemplateSimplifier::TokenAndName>&, std::set<std::basic_string<char> >&): Assertion `tokenlist.validateToken(tok2)' failed.
[09:02]
Exit code is not zero! Crash?

ftp://ftp.se.debian.org/debian/pool/main/libb/libbpp-phyl/libbpp-phyl_2.4.0.orig.tar.gz
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplateTools.h:607:24: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition]
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:309:39: style: Function 'getRootFrequenciesSet' argument 5 names different: declaration 'sharedParams' definition 'sharedparams'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:229:41: note: Function 'getRootFrequenciesSet' argument 5 names different: declaration 'sharedParams' definition 'sharedparams'.
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:309:39: note: Function 'getRootFrequenciesSet' argument 5 names different: declaration 'sharedParams' definition 'sharedparams'.
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:347:39: style: Function 'getFrequenciesSet' argument 5 names different: declaration 'sharedParams' definition 'sharedparams'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:260:41: note: Function 'getFrequenciesSet' argument 5 names different: declaration 'sharedParams' definition 'sharedparams'.
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:347:39: note: Function 'getFrequenciesSet' argument 5 names different: declaration 'sharedParams' definition 'sharedparams'.
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:383:22: style: Function 'getSubstitutionModelSet' argument 2 names different: declaration 'gcode' definition 'gCode'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:304:24: note: Function 'getSubstitutionModelSet' argument 2 names different: declaration 'gcode' definition 'gCode'.
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:383:22: note: Function 'getSubstitutionModelSet' argument 2 names different: declaration 'gcode' definition 'gCode'.
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:428:22: style: Function 'setSubstitutionModelSet' argument 3 names different: declaration 'gcode' definition 'gCode'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:369:24: note: Function 'setSubstitutionModelSet' argument 3 names different: declaration 'gcode' definition 'gCode'.
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:428:22: note: Function 'setSubstitutionModelSet' argument 3 names different: declaration 'gcode' definition 'gCode'.
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:352:23: style: Unused variable: unparsedParameterValues [unusedVariable]
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:1470:33: style: Unused variable: modelLinks [unusedVariable]
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:1471:30: style: Unused variable: parameterLinks [unusedVariable]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.h:181:110: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.h:185:114: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.h:581:110: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.h:671:114: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:650:135: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:727:135: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:294:113: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:299:113: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/NNITopologySearch.h:111:12: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h:242:106: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h:247:106: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:329:55: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:597:71: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:840:72: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:257:31: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceEstimation.h:419:25: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:130:0: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/Coala.h:94:15: performance: Technically the member function 'bpp::Coala::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceEstimation.h:155:31: performance: Technically the member function 'bpp::TwoTreeLikelihood::getLikelihoodData' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceEstimation.h:176:10: performance: Technically the member function 'bpp::TwoTreeLikelihood::setData' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceEstimation.h:242:12: performance: Technically the member function 'bpp::TwoTreeLikelihood::getSecondOrderDerivative' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:126:15: performance: Technically the member function 'bpp::MixtureOfASubstitutionModel::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:162:15: performance: Technically the member function 'bpp::MixtureOfSubstitutionModels::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/Coala.h:77:8: warning: The class 'Coala' defines member variable with name 'init_' also defined in its parent class 'CoalaCore'. [duplInheritedMember]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/CoalaCore.h:69:8: note: Parent variable 'CoalaCore::init_'
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/Coala.h:77:8: note: Derived variable 'Coala::init_'
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/Coala.h:78:16: warning: The class 'Coala' defines member variable with name 'nbrOfAxes_' also defined in its parent class 'CoalaCore'. [duplInheritedMember]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/CoalaCore.h:70:10: note: Parent variable 'CoalaCore::nbrOfAxes_'
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/Coala.h:78:16: note: Derived variable 'Coala::nbrOfAxes_'
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/Coala.h:79:15: warning: The class 'Coala' defines member variable with name 'exch_' also defined in its parent class 'CoalaCore'. [duplInheritedMember]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/CoalaCore.h:71:15: note: Parent variable 'CoalaCore::exch_'
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/Coala.h:79:15: note: Derived variable 'Coala::exch_'
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:129:5: style: Class 'AbstractStateMap' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:270:5: style: Class 'FromModelFrequenciesSet' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModelSet.h:151:3: style: Class 'SubstitutionModelSet' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.h:286:3: style: Class 'MixedSubstitutionModelSet' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.h:294:3: style: Class 'MixedSubstitutionModelSet' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.h:209:5: style: Class 'HyperNode' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.h:119:3: style: Class 'Node' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.h:132:3: style: Class 'Node' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:177:5: style: Class 'TotalSubstitutionRegister' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:223:5: style: Class 'CompleteSubstitutionRegister' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:322:5: style: Class 'VectorOfSubstitionRegisters' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:469:5: style: Class 'GeneralSubstitutionRegister' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:624:5: style: Class 'AAInteriorSubstitutionRegister' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:702:5: style: Class 'AAExteriorSubstitutionRegister' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:796:5: style: Class 'TsTvSubstitutionRegister' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:801:5: style: Class 'TsTvSubstitutionRegister' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:913:5: style: Class 'SWSubstitutionRegister' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:918:5: style: Class 'SWSubstitutionRegister' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:1144:5: style: Class 'KrKcSubstitutionRegister' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:1152:5: style: Class 'KrKcSubstitutionRegister' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:65:2: style: Class 'MvaFrequenciesSet' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionMethods.h:88:5: style: Class 'DecompositionMethods' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:142:5: style: Class 'LabelSubstitutionCount' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:67:5: style: Class 'OneJumpSubstitutionCount' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:87:7: style: Class 'SimpleBranchIterator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:73:9: style: Class 'ConstNonHomogeneousSiteModelIterator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:98:3: style: Class 'AbstractTreeLikelihoodData' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/TopologySearch.h:63:3: style: Class 'TopologyChangeEvent' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:76:3: style: Class 'BranchLikelihood' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h:75:3: style: Class 'AbstractTreeParsimonyData' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h:209:3: style: Class 'DRTreeParsimonyData' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.h:95:5: style: Class 'PseudoNewtonOptimizer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.h:66:7: style: Class 'PNStopCondition' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/OptimizationTools.h:497:5: style: Class 'ScaleFunction' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOTreeReaderFormat.h:64:5: style: Class 'BppOTreeReaderFormat' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.h:64:5: style: Class 'BppOMultiTreeReaderFormat' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOTreeWriterFormat.h:64:5: style: Class 'BppOTreeWriterFormat' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.h:64:5: style: Class 'BppOMultiTreeWriterFormat' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:72:3: style: Class 'BppORateDistributionFormat' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:116:0: style: Class 'bpp :: TreeTemplate < Node >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:124:0: style: Class 'bpp :: TreeTemplate < Node >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:116:0: style: Class 'bpp :: TreeTemplate < bpp :: Node >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:124:0: style: Class 'bpp :: TreeTemplate < bpp :: Node >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:116:0: style: Class 'bpp :: TreeTemplate < N2 >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:124:0: style: Class 'bpp :: TreeTemplate < N2 >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:57:1: warning: The class 'MvaFrequenciesSet' has 'operator=' but lack of 'copy constructor'. [copyCtorAndEqOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeExceptions.h:136:15: style: The function 'getNodeId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeExceptions.h:81:15: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeExceptions.h:136:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:147:29: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:69:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:147:29: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:148:20: style: The function 'getNumberOfModelStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:74:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:148:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:149:37: style: The function 'getAlphabetStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:87:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:149:37: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:150:17: style: The function 'getAlphabetStateAsInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:99:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:150:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:151:25: style: The function 'getAlphabetStateAsChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:93:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:151:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:152:33: style: The function 'getModelStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:111:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:152:33: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:155:33: style: The function 'getModelStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:105:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:155:33: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:181:25: style: The function 'getStateDescription' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:80:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:181:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:202:25: style: The function 'getStateDescription' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:80:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/StateMap.h:202:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:167:21: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:76:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:167:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:169:21: style: The function 'getStateMap' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:81:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:169:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:171:20: style: The function 'getFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:86:28: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:171:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:173:33: style: The function 'getAlphabetStatesFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:91:41: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:173:33: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:184:10: style: The function 'setFrequenciesFromAlphabetStatesFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:109:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:184:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:186:12: style: The function 'getNumberOfFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:116:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:186:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:188:17: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:111:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:188:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:242:10: style: The function 'setFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:100:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:242:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:249:10: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:198:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:249:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:287:10: style: The function 'setFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:100:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:287:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:289:10: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:198:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:289:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:332:10: style: The function 'setFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:100:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:332:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:338:10: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:198:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:338:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:381:10: style: The function 'setFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:100:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:381:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:384:10: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:198:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:384:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:251:21: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:248:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:251:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:253:21: style: The function 'getStateMap' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:149:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:253:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:255:29: style: The function 'getAlphabetStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:144:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:255:29: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:257:17: style: The function 'getAlphabetStateAsChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:177:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:257:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:259:9: style: The function 'getAlphabetStateAsInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:171:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:259:9: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:261:25: style: The function 'getModelStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:157:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:261:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:263:25: style: The function 'getModelStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:165:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:263:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:265:20: style: The function 'getFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:209:28: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:265:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:267:10: style: The function 'computeFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:216:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:267:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:269:10: style: The function 'computeFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:223:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:269:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:271:27: style: The function 'getGenerator' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:464:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:271:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:273:27: style: The function 'getExchangeabilityMatrix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:471:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:273:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:275:12: style: The function 'Sij' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:479:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:275:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:277:35: style: The function 'getPij_t' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:229:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:277:35: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:278:35: style: The function 'getdPij_dt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:236:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:278:35: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:279:35: style: The function 'getd2Pij_dt2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:243:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:279:35: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:281:20: style: The function 'getEigenValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:494:28: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:281:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:283:20: style: The function 'getIEigenValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:499:28: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:283:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:285:10: style: The function 'isDiagonalizable' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:504:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:285:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:287:10: style: The function 'isNonSingular' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:509:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:287:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:289:27: style: The function 'getRowLeftEigenVectors' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:515:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:289:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:291:27: style: The function 'getColumnRightEigenVectors' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:521:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:291:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:293:20: style: The function 'freq' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:183:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:293:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:295:20: style: The function 'Qij' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:447:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:295:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:297:20: style: The function 'Pij_t' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:189:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:297:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:298:20: style: The function 'dPij_dt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:196:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:298:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:299:20: style: The function 'd2Pij_dt2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:203:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:299:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:301:12: style: The function 'getInitValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:273:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:301:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:303:10: style: The function 'setFreqFromData' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:300:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:303:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:305:18: style: The function 'setFreq' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:308:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:305:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:307:10: style: The function 'enableEigenDecomposition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:484:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:307:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:309:10: style: The function 'enableEigenDecomposition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:489:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:309:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:336:10: style: The function 'addRateParameter' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:286:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:336:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:357:18: style: The function 'updateMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:439:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:357:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:364:14: style: The function 'getFrequencies_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:319:22: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:364:14: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:376:10: style: The function 'setScalable' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:529:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:376:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:386:18: style: The function 'isScalable' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:536:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:386:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:396:12: style: The function 'getScale' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:546:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:396:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:404:10: style: The function 'setScale' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:555:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:404:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:411:10: style: The function 'normalize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:562:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:411:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:419:10: style: The function 'setDiagonal' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:570:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:419:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:425:20: style: The function 'getRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:278:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:425:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:427:18: style: The function 'setRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:284:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:427:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:471:50: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:248:40: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:471:50: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:496:18: style: The function 'updateMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:357:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:496:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.h:357:8: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModelSet.h:234:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.h:357:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:197:21: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:248:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:197:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:199:12: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:258:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:199:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:201:21: style: The function 'getStateMap' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:149:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:201:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:203:29: style: The function 'getAlphabetStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:144:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:203:29: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:205:17: style: The function 'getAlphabetStateAsChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:177:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:205:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:207:9: style: The function 'getAlphabetStateAsInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:171:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:207:9: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:209:25: style: The function 'getModelStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:157:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:209:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:211:25: style: The function 'getModelStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:165:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:211:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:213:20: style: The function 'getFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:209:28: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:213:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:215:27: style: The function 'getExchangeabilityMatrix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:471:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:215:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:217:27: style: The function 'getGenerator' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:464:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:217:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:219:27: style: The function 'getPij_t' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:229:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:219:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:220:27: style: The function 'getdPij_dt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:236:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:220:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:221:27: style: The function 'getd2Pij_dt2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:243:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:221:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:223:20: style: The function 'getEigenValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:494:28: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:223:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:224:20: style: The function 'getIEigenValues' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:499:28: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:224:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:226:10: style: The function 'isDiagonalizable' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:504:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:226:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:227:10: style: The function 'isNonSingular' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:509:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:227:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:229:27: style: The function 'getRowLeftEigenVectors' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:515:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:229:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:230:27: style: The function 'getColumnRightEigenVectors' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:521:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:230:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:232:12: style: The function 'freq' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:183:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:232:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:233:12: style: The function 'Sij' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:479:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:233:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:234:12: style: The function 'Qij' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:447:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:234:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:236:12: style: The function 'Pij_t' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:189:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:236:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:237:12: style: The function 'dPij_dt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:196:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:237:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:238:12: style: The function 'd2Pij_dt2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:203:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:238:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:240:12: style: The function 'getInitValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:273:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:240:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:242:10: style: The function 'setFreqFromData' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:300:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:242:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:248:18: style: The function 'setFreq' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:308:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:248:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:268:12: style: The function 'getRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:278:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:268:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:270:10: style: The function 'setRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:284:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:270:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:272:10: style: The function 'isScalable' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:536:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:272:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:277:10: style: The function 'setScalable' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:529:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:277:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:282:10: style: The function 'normalize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:562:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:282:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:288:10: style: The function 'setDiagonal' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:570:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:288:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:290:12: style: The function 'getScale' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:546:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:290:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:297:10: style: The function 'setScale' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:555:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:297:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:302:10: style: The function 'enableEigenDecomposition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:484:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:302:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:304:10: style: The function 'enableEigenDecomposition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:489:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:304:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:306:10: style: The function 'computeFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:216:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:306:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:308:10: style: The function 'computeFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:223:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:308:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:328:18: style: The function 'updateMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:439:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:328:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:338:14: style: The function 'getFrequencies_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:319:22: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:338:14: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h:66:28: style: The function 'getModelForSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:356:36: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h:66:28: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h:70:22: style: The function 'getModelForSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:367:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h:70:22: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:64:12: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:258:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:64:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:104:42: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:248:40: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:104:42: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:128:52: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:471:50: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:128:52: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:64:12: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:258:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:64:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:100:39: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:248:40: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:100:39: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:124:49: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:471:50: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:124:49: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:88:37: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:64:41: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:88:37: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:106:47: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:88:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:106:47: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:155:30: style: The function 'getSubstitutionModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:92:38: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:155:30: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:157:21: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:87:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:157:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:159:24: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:105:32: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:159:24: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:184:12: style: The function 'getNumberOfSubstitutionTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:97:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:184:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:186:12: style: The function 'getType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:115:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:186:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:191:17: style: The function 'getTypeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:126:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:191:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:266:12: style: The function 'getNumberOfSubstitutionTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:97:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:266:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:271:12: style: The function 'getType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:115:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:271:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:283:17: style: The function 'getTypeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:126:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:283:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:375:12: style: The function 'getType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:115:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:375:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:394:12: style: The function 'getNumberOfSubstitutionTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:97:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:394:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:412:17: style: The function 'getTypeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:126:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:412:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:509:12: style: The function 'getType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:115:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:509:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:514:12: style: The function 'getNumberOfSubstitutionTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:97:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:514:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:522:17: style: The function 'getTypeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:126:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:522:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:601:17: style: The function 'getTypeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:126:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:601:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:646:17: style: The function 'getTypeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:126:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:646:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:723:17: style: The function 'getTypeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:126:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:723:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:826:12: style: The function 'getNumberOfSubstitutionTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:97:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:826:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:828:12: style: The function 'getType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:115:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:828:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:868:17: style: The function 'getTypeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:126:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:868:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:943:12: style: The function 'getNumberOfSubstitutionTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:97:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:943:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:945:12: style: The function 'getType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:115:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:945:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:1008:17: style: The function 'getTypeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:126:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:1008:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:1075:12: style: The function 'getNumberOfSubstitutionTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:97:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:1075:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:1077:12: style: The function 'getType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:115:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:1077:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:1104:17: style: The function 'getTypeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:126:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:1104:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:1287:12: style: The function 'getNumberOfSubstitutionTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:97:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:1287:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:1289:12: style: The function 'getType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:115:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:1289:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:1326:17: style: The function 'getTypeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:126:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:1326:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h:225:12: style: The function 'getNumberOfSubstitutionTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:97:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h:225:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h:227:20: style: The function 'getType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:115:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h:227:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h:237:17: style: The function 'getTypeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:126:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h:237:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h:381:12: style: The function 'getNumberOfSubstitutionTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:97:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h:381:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h:383:12: style: The function 'getType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h:227:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h:383:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h:406:17: style: The function 'getTypeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionRegister.h:126:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h:406:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:193:10: style: The function 'hasSubstitutionRegister' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:83:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:193:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:202:10: style: The function 'setSubstitutionRegister' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:99:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:202:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:207:33: style: The function 'getSubstitutionRegister' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:88:41: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:207:33: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:209:27: style: The function 'getSubstitutionRegister' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:93:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:209:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:99:7: style: The function 'setFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:100:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:99:7: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:102:7: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:198:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:102:7: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:104:25: style: The function 'getNumberOfSubstitutionsForEachType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:152:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:104:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:111:10: style: The function 'setSubstitutionModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:159:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:111:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:117:10: style: The function 'setSubstitutionRegister' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:99:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:117:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:123:10: style: The function 'substitutionRegisterHasChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:212:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h:123:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:104:10: style: The function 'setWeights' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:59:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:104:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:105:10: style: The function 'hasWeights' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:60:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:105:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:106:27: style: The function 'getWeights' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:61:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:106:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:111:25: style: The function 'getNumberOfSubstitutionsForEachType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:152:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:111:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:113:10: style: The function 'setSubstitutionModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:159:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:113:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:117:10: style: The function 'substitutionRegisterHasChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:212:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:117:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:118:10: style: The function 'weightsHaveChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:109:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h:118:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:97:25: style: The function 'getNumberOfSubstitutionsForEachType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:152:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:97:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:105:10: style: The function 'setSubstitutionModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:159:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:105:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:113:10: style: The function 'substitutionRegisterHasChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:212:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:113:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:115:10: style: The function 'weightsHaveChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:109:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h:115:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:107:25: style: The function 'getNumberOfSubstitutionsForEachType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:152:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:107:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:116:10: style: The function 'setSubstitutionModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:159:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:116:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:122:10: style: The function 'substitutionRegisterHasChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:212:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:122:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:123:10: style: The function 'weightsHaveChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h:109:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:123:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:159:25: style: The function 'getNumberOfSubstitutionsForEachType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:152:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:159:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:166:10: style: The function 'setSubstitutionModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:159:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:166:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:171:10: style: The function 'setSubstitutionRegister' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:99:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:171:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:176:10: style: The function 'substitutionRegisterHasChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:212:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h:176:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:96:25: style: The function 'getNumberOfSubstitutionsForEachType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:152:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:96:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:103:10: style: The function 'setSubstitutionModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:159:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:103:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:110:10: style: The function 'setSubstitutionRegister' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:99:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:110:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:115:10: style: The function 'substitutionRegisterHasChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionCount.h:212:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h:115:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:288:26: style: The function 'getData' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:184:34: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:288:26: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:289:21: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:326:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:289:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:290:13: style: The function 'getLikelihoodForEachSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:250:21: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:290:13: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:291:13: style: The function 'getLogLikelihoodForEachSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:257:21: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:291:13: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:292:14: style: The function 'getLikelihoodForEachSiteForEachState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:264:22: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:292:14: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:293:14: style: The function 'getLogLikelihoodForEachSiteForEachState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:271:22: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:293:14: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:294:12: style: The function 'getNumberOfSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:299:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:294:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:295:17: style: The function 'getTree' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:292:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:295:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:296:10: style: The function 'enableDerivatives' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:417:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:296:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:301:10: style: The function 'isInitialized' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:199:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:301:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:302:10: style: The function 'initialize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:194:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:302:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:94:12: style: The function 'getLikelihoodForASiteForAState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:234:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:94:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:95:12: style: The function 'getLogLikelihoodForASiteForAState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:243:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:95:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:96:19: style: The function 'getDerivableParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:426:27: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:96:19: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:97:19: style: The function 'getNonDerivableParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:435:27: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:97:19: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:98:14: style: The function 'getTransitionProbabilities' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:379:22: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:98:14: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:106:33: style: The function 'getRateDistribution' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:70:41: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:106:33: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:107:33: style: The function 'getRateDistribution' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:77:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:107:33: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:108:12: style: The function 'getNumberOfClasses' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:192:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:108:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:109:19: style: The function 'getRateDistributionParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:185:27: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:109:19: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:110:14: style: The function 'getLikelihoodForEachSiteForEachRateClass' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:122:22: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:110:14: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:111:14: style: The function 'getLogLikelihoodForEachSiteForEachRateClass' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:130:22: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:111:14: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:112:15: style: The function 'getLikelihoodForEachSiteForEachRateClassForEachState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:137:23: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:112:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:113:15: style: The function 'getLogLikelihoodForEachSiteForEachRateClassForEachState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:145:23: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:113:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:114:14: style: The function 'getPosteriorProbabilitiesOfEachRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:154:22: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:114:14: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:115:13: style: The function 'getRateWithMaxPostProbOfEachSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:170:21: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:115:13: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:116:25: style: The function 'getRateClassWithMaxPostProbOfEachSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:162:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:116:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:117:13: style: The function 'getPosteriorRateOfEachSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:178:21: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:117:13: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:160:10: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:304:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:160:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:162:27: style: The function 'getAlphabetStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:319:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:162:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:164:7: style: The function 'getAlphabetStateAsInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:309:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:164:7: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:166:15: style: The function 'getAlphabetStateAsChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:314:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:166:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:168:8: style: The function 'initialize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:194:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:168:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:170:17: style: The function 'getBranchLengthsParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:339:27: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:170:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:172:17: style: The function 'getSubstitutionModelParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:346:27: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:172:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:179:30: style: The function 'getRootFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:406:40: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:179:30: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:183:29: style: The function 'getNewBranchModelIterator' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:381:39: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:183:29: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:188:27: style: The function 'getNewSiteModelIterator' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:383:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:188:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:202:26: style: The function 'getModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h:78:36: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:202:26: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:205:20: style: The function 'getModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h:83:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:205:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:208:8: style: The function 'setModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h:89:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:208:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:217:36: style: The function 'getSubstitutionModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h:97:38: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:217:36: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:228:36: style: The function 'getSubstitutionModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h:108:38: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:228:36: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:69:28: style: The function 'getModelForSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:356:36: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:69:28: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:74:22: style: The function 'getModelForSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:367:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:74:22: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:176:12: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:304:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:176:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:178:29: style: The function 'getAlphabetStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:319:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:178:29: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:180:9: style: The function 'getAlphabetStateAsInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:309:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:180:9: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:182:17: style: The function 'getAlphabetStateAsChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:314:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:182:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:184:10: style: The function 'initialize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:194:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:184:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:186:19: style: The function 'getBranchLengthsParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:339:27: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:186:19: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:188:19: style: The function 'getSubstitutionModelParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:346:27: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:188:19: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:195:28: style: The function 'getModelForNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:86:36: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:195:28: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:200:22: style: The function 'getModelForNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:95:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:200:22: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:205:32: style: The function 'getRootFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:406:40: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:205:32: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:209:31: style: The function 'getNewBranchModelIterator' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:381:39: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:209:31: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:214:29: style: The function 'getNewSiteModelIterator' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:383:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:214:29: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:228:33: style: The function 'getSubstitutionModelSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:100:41: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:228:33: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:230:27: style: The function 'getSubstitutionModelSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:105:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:230:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:232:10: style: The function 'setSubstitutionModelSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:111:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:232:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:234:19: style: The function 'getRootFrequenciesParameters' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:116:27: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:234:19: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:123:10: style: The function 'getRootArrayPosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:110:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:123:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:127:16: style: The function 'getWeight' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:132:26: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:127:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:131:36: style: The function 'getWeights' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:137:46: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:131:36: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:136:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:107:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:136:19: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:138:29: style: The function 'getTree' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:108:39: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:138:29: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:93:17: style: The function 'getNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:76:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:93:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:94:10: style: The function 'setNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:85:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:94:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:177:17: style: The function 'getNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:76:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:177:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:179:10: style: The function 'setNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:85:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:179:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:326:12: style: The function 'getArrayPosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:109:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:326:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:390:12: style: The function 'getNumberOfDistinctSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:117:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:390:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:392:12: style: The function 'getNumberOfSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:122:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:392:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:394:12: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:127:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:394:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:145:10: style: The function 'setData' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:177:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:145:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:146:12: style: The function 'getLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:278:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:146:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:147:12: style: The function 'getLogLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:285:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:147:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:148:12: style: The function 'getLikelihoodForASite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:217:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:148:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:149:12: style: The function 'getLogLikelihoodForASite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:225:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:149:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:150:12: style: The function 'getSiteIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:391:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:150:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:161:12: style: The function 'getLikelihoodForASiteForARateClass' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:86:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:161:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:162:12: style: The function 'getLogLikelihoodForASiteForARateClass' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:95:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:162:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:163:12: style: The function 'getLikelihoodForASiteForARateClassForAState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:105:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:163:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:164:12: style: The function 'getLogLikelihoodForASiteForARateClassForAState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:115:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:164:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:204:31: style: The function 'getLikelihoodData' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRTreeLikelihood.h:92:39: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:204:31: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:205:37: style: The function 'getLikelihoodData' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRTreeLikelihood.h:93:45: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:205:37: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:207:18: style: The function 'computeLikelihoodAtNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRTreeLikelihood.h:102:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:207:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:230:33: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/NNISearchable.h:104:28: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:230:33: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:251:15: style: The function 'getTopology' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/NNISearchable.h:135:23: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:251:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:253:10: style: The function 'getTopologyValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/NNISearchable.h:142:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:253:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:255:10: style: The function 'testNNI' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/NNISearchable.h:120:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:255:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:257:8: style: The function 'doNNI' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/NNISearchable.h:128:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:257:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:259:8: style: The function 'topologyChangeTested' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/TopologySearch.h:113:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:259:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:267:8: style: The function 'topologyChangeSuccessful' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/TopologySearch.h:122:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:267:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/NNITopologySearch.h:116:8: style: The function 'search' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/TopologySearch.h:142:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/NNITopologySearch.h:116:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/NNITopologySearch.h:126:10: style: The function 'addTopologyListener' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/TopologySearch.h:149:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/NNITopologySearch.h:126:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:109:23: style: The function 'getTree' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:92:23: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:109:23: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:110:37: style: The function 'getScoreForEachSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:85:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:110:37: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h:99:10: style: The function 'getRootArrayPosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/TreeParsimonyData.h:104:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h:99:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h:109:29: style: The function 'getTree' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/TreeParsimonyData.h:102:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h:109:29: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h:100:15: style: The function 'getNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/TreeParsimonyData.h:73:23: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h:100:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h:102:8: style: The function 'setNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/TreeParsimonyData.h:80:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h:102:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h:171:15: style: The function 'getNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/TreeParsimonyData.h:73:23: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h:171:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h:172:8: style: The function 'setNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/TreeParsimonyData.h:80:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h:172:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h:290:10: style: The function 'getArrayPosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/TreeParsimonyData.h:103:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h:290:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:82:25: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/NNISearchable.h:104:28: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:82:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:104:16: style: The function 'getScore' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:70:24: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:104:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:105:16: style: The function 'getScoreForSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:78:24: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:105:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:167:10: style: The function 'getTopologyValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/NNISearchable.h:142:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:167:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:169:10: style: The function 'testNNI' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/NNISearchable.h:120:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:169:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:171:8: style: The function 'doNNI' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/NNISearchable.h:128:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:171:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:174:15: style: The function 'getTopology' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/NNISearchable.h:135:23: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:174:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:176:8: style: The function 'topologyChangeTested' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/TopologySearch.h:113:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:176:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:182:8: style: The function 'topologyChangeSuccessful' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/TopologySearch.h:122:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:182:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/OptimizationTools.h:193:8: style: The function 'topologyChangeTested' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/TopologySearch.h:113:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/OptimizationTools.h:193:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/OptimizationTools.h:194:8: style: The function 'topologyChangeSuccessful' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/TopologySearch.h:122:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/OptimizationTools.h:194:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/OptimizationTools.h:286:8: style: The function 'topologyChangeTested' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/TopologySearch.h:113:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/OptimizationTools.h:286:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/OptimizationTools.h:287:8: style: The function 'topologyChangeSuccessful' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/TopologySearch.h:122:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/OptimizationTools.h:287:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:142:19: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:97:19: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:142:19: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:143:19: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:89:19: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:143:19: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:164:10: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:128:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:164:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:165:18: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:120:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:165:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:261:18: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:216:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:261:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:262:18: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:208:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:262:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:282:10: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:247:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:282:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:283:18: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:239:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:283:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:108:43: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:67:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:108:43: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:114:18: style: The function 'getNumberOfModels' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:92:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:114:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:122:36: style: The function 'getNModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:74:38: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:122:36: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:127:30: style: The function 'getNModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:76:32: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:127:30: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:135:10: style: The function 'getNRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:104:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:135:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:145:16: style: The function 'setRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:284:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:145:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:157:16: style: The function 'setVRates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:116:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:157:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:164:16: style: The function 'normalizeVRates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:123:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:164:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:170:30: style: The function 'getVRates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:98:40: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:170:30: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:179:18: style: The function 'getNProbability' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:82:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:179:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:189:38: style: The function 'getProbabilities' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:84:40: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:189:38: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:197:16: style: The function 'setNProbability' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:90:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:197:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:207:10: style: The function 'Qij' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:447:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:207:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:214:18: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:258:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:214:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:216:33: style: The function 'getPij_t' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:229:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:216:33: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:217:33: style: The function 'getdPij_dt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:236:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:217:33: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:218:33: style: The function 'getd2Pij_dt2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:243:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:218:33: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:123:32: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:108:43: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:123:32: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:159:32: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:108:43: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:159:32: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:182:16: style: The function 'setVRates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:157:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:182:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:149:47: style: The function 'getUnparsedArguments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoSubstitutionModel.h:103:55: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:149:47: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:163:10: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoSubstitutionModel.h:129:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h:163:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:125:45: style: The function 'getUnparsedArguments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoFrequenciesSet.h:98:55: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:125:45: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:127:8: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoFrequenciesSet.h:122:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:127:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:139:0: style: The function 'cloneSubtree' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:164:19: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:139:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:158:0: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:172:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:158:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:160:0: style: The function 'setName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:174:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:160:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:162:0: style: The function 'getRootId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:190:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:162:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:164:0: style: The function 'getNumberOfLeaves' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:177:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:164:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:166:0: style: The function 'getNumberOfNodes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:179:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:166:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:170:0: style: The function 'getLeafId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:192:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:170:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:172:0: style: The function 'getLeavesId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:194:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:172:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:174:0: style: The function 'getNodesId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:196:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:174:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:176:0: style: The function 'getInnerNodesId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:198:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:176:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:178:0: style: The function 'getBranchesId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:200:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:178:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:180:0: style: The function 'getBranchLengths' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:181:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:180:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:182:0: style: The function 'getLeavesNames' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:183:38: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:182:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:184:0: style: The function 'getSonsId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:202:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:184:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:186:0: style: The function 'getAncestorsId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:204:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:186:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:188:0: style: The function 'getFatherId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:206:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:188:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:190:0: style: The function 'hasFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:208:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:190:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:192:0: style: The function 'getNodeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:217:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:192:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:194:0: style: The function 'hasNodeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:223:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:194:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:196:0: style: The function 'setNodeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:219:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:196:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:198:0: style: The function 'deleteNodeName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:221:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:198:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:200:0: style: The function 'hasNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:231:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:200:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:202:0: style: The function 'isLeaf' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:233:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:202:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:204:0: style: The function 'isRoot' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:235:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:204:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:206:0: style: The function 'getDistanceToFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:263:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:206:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:208:0: style: The function 'setDistanceToFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:265:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:208:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:210:0: style: The function 'deleteDistanceToFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:267:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:210:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:212:0: style: The function 'hasDistanceToFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:269:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:212:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:214:0: style: The function 'hasNodeProperty' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:277:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:214:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:216:0: style: The function 'setNodeProperty' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:279:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:216:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:218:0: style: The function 'getNodeProperty' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:281:23: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:218:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:220:0: style: The function 'getNodeProperty' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:283:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:220:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:222:0: style: The function 'removeNodeProperty' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:285:23: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:222:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:224:0: style: The function 'getNodePropertyNames' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:287:38: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:224:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:226:0: style: The function 'hasBranchProperty' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:295:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:226:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:228:0: style: The function 'setBranchProperty' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:297:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:228:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:230:0: style: The function 'getBranchProperty' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:299:23: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:230:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:232:0: style: The function 'getBranchProperty' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:301:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:232:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:234:0: style: The function 'removeBranchProperty' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:303:23: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:234:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:236:0: style: The function 'getBranchPropertyNames' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:305:38: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:236:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:238:0: style: The function 'rootAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:316:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:238:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:240:0: style: The function 'newOutGroup' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:327:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:240:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:242:0: style: The function 'isRooted' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:334:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:242:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:244:0: style: The function 'unroot' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:342:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:244:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:286:0: style: The function 'resetNodesId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:347:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:286:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:295:0: style: The function 'isMultifurcating' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:356:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:295:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:345:0: style: The function 'getBranchLengths' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:364:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:345:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:356:0: style: The function 'getTotalLength' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:372:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:356:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:361:0: style: The function 'setBranchLengths' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:379:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:361:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:369:0: style: The function 'setVoidBranchLengths' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:386:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:369:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:377:0: style: The function 'scaleTree' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:396:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:377:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:385:0: style: The function 'getNextId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Tree.h:403:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:385:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:173:7: style: Exception should be caught by reference. [catchExceptionByValue]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:200:97: performance: Function parameter 'nodesId' should be passed by const reference. [passedByValue]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:174:19: style: Same expression on both sides of '==' because the value of 'cpelements_' and 'elements' are the same. [duplicateExpression]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:172:32: note: 'cpelements_' is assigned value 'elements' here.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:174:19: note: Same expression on both sides of '==' because the value of 'cpelements_' and 'elements' are the same.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:334:8: style: The scope of the variable 'dac' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:334:13: style: The scope of the variable 'padac' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:154:28: style: Function 'BipartitionList' argument 2 names different: declaration 'bipl' definition 'bitBipL'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.h:109:88: note: Function 'BipartitionList' argument 2 names different: declaration 'bipl' definition 'bitBipL'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:154:28: note: Function 'BipartitionList' argument 2 names different: declaration 'bipl' definition 'bitBipL'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:182:57: style: Function 'BipartitionList' argument 1 names different: declaration 'bipl' definition 'bipL'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.h:114:44: note: Function 'BipartitionList' argument 1 names different: declaration 'bipl' definition 'bipL'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:182:57: note: Function 'BipartitionList' argument 1 names different: declaration 'bipl' definition 'bipL'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:205:68: style: Function 'operator=' argument 1 names different: declaration 'bipl' definition 'bipL'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.h:119:55: note: Function 'operator=' argument 1 names different: declaration 'bipl' definition 'bipL'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:205:68: note: Function 'operator=' argument 1 names different: declaration 'bipl' definition 'bipL'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:528:49: style: Function 'getPartitionSize' argument 1 names different: declaration 'i' definition 'k'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.h:197:36: note: Function 'getPartitionSize' argument 1 names different: declaration 'i' definition 'k'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:528:49: note: Function 'getPartitionSize' argument 1 names different: declaration 'i' definition 'k'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:605:35: style: Function 'flip' argument 1 names different: declaration 'i' definition 'k'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.h:192:22: note: Function 'flip' argument 1 names different: declaration 'i' definition 'k'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:605:35: note: Function 'flip' argument 1 names different: declaration 'i' definition 'k'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:279:49: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionList.cpp:111:3: performance: Variable 'elements_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.cpp:70:34: style: Function 'bit1' argument 1 names different: declaration 'list' definition 'plist'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.h:81:25: note: Function 'bit1' argument 1 names different: declaration 'list' definition 'plist'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.cpp:70:34: note: Function 'bit1' argument 1 names different: declaration 'list' definition 'plist'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.cpp:79:34: style: Function 'bit0' argument 1 names different: declaration 'list' definition 'plist'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.h:88:25: note: Function 'bit0' argument 1 names different: declaration 'list' definition 'plist'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.cpp:79:34: note: Function 'bit0' argument 1 names different: declaration 'list' definition 'plist'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.cpp:117:37: style: Function 'testBit' argument 1 names different: declaration 'list' definition 'plist'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.h:134:28: note: Function 'testBit' argument 1 names different: declaration 'list' definition 'plist'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.cpp:117:37: note: Function 'testBit' argument 1 names different: declaration 'list' definition 'plist'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.cpp:180:26: style: Function 'areIdentical' argument 1 names different: declaration 'bipart1' definition 'bipartL1'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.h:152:51: note: Function 'areIdentical' argument 1 names different: declaration 'bipart1' definition 'bipartL1'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.cpp:180:26: note: Function 'areIdentical' argument 1 names different: declaration 'bipart1' definition 'bipartL1'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.cpp:181:26: style: Function 'areIdentical' argument 3 names different: declaration 'bipart2' definition 'bipartL2'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.h:152:94: note: Function 'areIdentical' argument 3 names different: declaration 'bipart2' definition 'bipartL2'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.cpp:181:26: note: Function 'areIdentical' argument 3 names different: declaration 'bipart2' definition 'bipartL2'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.cpp:193:26: style: Function 'areCompatible' argument 1 names different: declaration 'bipart1' definition 'bipartL1'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.h:157:52: note: Function 'areCompatible' argument 1 names different: declaration 'bipart1' definition 'bipartL1'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.cpp:193:26: note: Function 'areCompatible' argument 1 names different: declaration 'bipart1' definition 'bipartL1'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.cpp:194:26: style: Function 'areCompatible' argument 3 names different: declaration 'bipart2' definition 'bipartL2'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.h:157:95: note: Function 'areCompatible' argument 3 names different: declaration 'bipart2' definition 'bipartL2'.
bpp-phyl-2.4.0/src/Bpp/Phyl/BipartitionTools.cpp:194:26: note: Function 'areCompatible' argument 3 names different: declaration 'bipart2' definition 'bipartL2'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:86:93: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:102:93: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:100:42: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:114:16: warning: Virtual function 'setDistanceMatrix' is called from constructor 'AbstractAgglomerativeDistanceMethod(const DistanceMatrix&matrix,bool verbose=true,bool rootTree=false)' at line 83. Dynamic binding is not used. [virtualCallInConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:83:7: note: Calling setDistanceMatrix
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:114:16: note: setDistanceMatrix is a virtual method
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:114:16: style: The function 'setDistanceMatrix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceMethod.h:75:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:114:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:142:16: style: The function 'computeTree' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceMethod.h:80:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:142:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:144:10: style: The function 'setVerbose' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceMethod.h:95:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:144:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:145:10: style: The function 'isVerbose' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceMethod.h:100:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:145:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/BioNJ.cpp:90:94: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/BioNJ.cpp:105:92: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/BioNJ.cpp:121:92: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.h:98:17: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceMethod.h:90:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.h:98:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.h:100:16: style: The function 'setDistanceMatrix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:114:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.h:100:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.h:109:23: style: The function 'getBestPair' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:163:31: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.h:109:23: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.h:110:23: style: The function 'computeBranchLengthsForPair' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:178:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.h:110:23: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.h:111:10: style: The function 'computeDistancesFromPair' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:188:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.h:111:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.h:112:8: style: The function 'finalStep' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:195:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.h:112:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/BioNJ.h:99:15: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceMethod.h:90:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/BioNJ.h:99:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/BioNJ.h:101:8: style: The function 'setDistanceMatrix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.h:100:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/BioNJ.h:101:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/BioNJ.h:106:8: style: The function 'computeTree' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:142:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/BioNJ.h:106:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/BioNJ.h:107:10: style: The function 'computeDistancesFromPair' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:188:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/BioNJ.h:107:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:595:12: warning: Passing value -1. to log() leads to implementation-defined result. [wrongmathcall]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:600:12: warning: Passing value -1. to log() leads to implementation-defined result. [wrongmathcall]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:625:12: warning: Passing value -1. to log() leads to implementation-defined result. [wrongmathcall]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:630:12: warning: Passing value -1. to log() leads to implementation-defined result. [wrongmathcall]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceEstimation.h:225:10: performance: Technically the member function 'bpp::TwoTreeLikelihood::setParameters' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:322:25: note: Technically the member function 'bpp::TwoTreeLikelihood::setParameters' can be static.
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceEstimation.h:225:10: note: Technically the member function 'bpp::TwoTreeLikelihood::setParameters' can be static.
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:64:90: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:68:5: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:69:39: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:84:92: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:88:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:89:41: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:179:3: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:63:26: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:81:24: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:92:3: style: Class 'NodeTemplate' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:97:3: style: Class 'NodeTemplate' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:110:3: style: Class 'NodeTemplate' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.h:100:15: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceMethod.h:90:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.h:100:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.h:102:23: style: The function 'getTree' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:123:24: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.h:102:23: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.h:105:23: style: The function 'getBestPair' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:163:31: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.h:105:23: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.h:106:23: style: The function 'computeBranchLengthsForPair' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:178:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.h:106:23: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.h:107:10: style: The function 'computeDistancesFromPair' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:188:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.h:107:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.h:108:8: style: The function 'finalStep' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:195:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.h:108:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.h:109:17: style: The function 'getLeafNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:206:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.h:109:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.h:110:17: style: The function 'getParentNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:218:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.h:110:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:188:0: error: Memory leak: root [memleak]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.cpp:53:95: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.cpp:57:92: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.cpp:66:90: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.cpp:70:5: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.cpp:71:39: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.cpp:123:3: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.cpp:138:5: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.cpp:65:25: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/NeighborJoining.cpp:85:23: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.cpp:64:90: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.cpp:68:5: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.cpp:69:39: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.cpp:121:3: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.cpp:63:26: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.cpp:82:24: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:73:3: style: Class 'PGMA' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:95:15: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/DistanceMethod.h:90:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:95:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:97:8: style: The function 'setDistanceMatrix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:114:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:97:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:102:23: style: The function 'getTree' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:123:24: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:102:23: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:108:23: style: The function 'getBestPair' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:163:31: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:108:23: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:109:23: style: The function 'computeBranchLengthsForPair' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:178:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:109:23: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:110:10: style: The function 'computeDistancesFromPair' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:188:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:110:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:111:8: style: The function 'finalStep' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:195:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:111:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:112:17: style: The function 'getLeafNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:206:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:112:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:113:17: style: The function 'getParentNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:218:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.h:113:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Distance/PGMA.cpp:130:0: error: Memory leak: root [memleak]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:91:3: style: Class 'TreeDrawingListenerAdapter' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:265:3: style: Class 'LabelInnerNodesTreeDrawingListener' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:286:3: style: Class 'LabelCollapsedNodesTreeDrawingListener' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:92:0: style: Class 'bpp :: NodeTemplate < TreeDrawingNodeInfo >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:97:0: style: Class 'bpp :: NodeTemplate < TreeDrawingNodeInfo >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:110:0: style: Class 'bpp :: NodeTemplate < TreeDrawingNodeInfo >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:116:0: style: Class 'bpp :: TreeTemplate < bpp :: NodeTemplate < TreeDrawingNodeInfo > >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:124:0: style: Class 'bpp :: TreeTemplate < bpp :: NodeTemplate < TreeDrawingNodeInfo > >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:94:8: style: The function 'beforeDrawTree' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:62:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:94:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:95:8: style: The function 'afterDrawTree' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:63:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:95:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:96:8: style: The function 'beforeDrawNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:64:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:96:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:97:8: style: The function 'afterDrawNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:65:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:97:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:98:8: style: The function 'beforeDrawBranch' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:66:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:98:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:99:8: style: The function 'afterDrawBranch' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:67:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:99:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:100:8: style: The function 'isAutonomous' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:73:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:100:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:101:8: style: The function 'isEnabled' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:75:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:101:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:102:8: style: The function 'enable' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:76:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:102:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:136:8: style: The function 'afterDrawNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:65:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:136:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:171:8: style: The function 'afterDrawNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:65:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:171:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:210:8: style: The function 'afterDrawBranch' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:67:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:210:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:248:8: style: The function 'afterDrawBranch' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:67:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:248:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:271:8: style: The function 'afterDrawNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:65:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:271:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:292:8: style: The function 'afterDrawNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:65:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingListener.h:292:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:212:10: style: The function 'hasTree' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:282:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:212:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:216:10: style: The function 'setTree' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:292:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:216:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:228:21: style: The function 'getNodePosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:344:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:228:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:230:9: style: The function 'getNodeAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:353:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:230:9: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:273:10: style: The function 'setDisplaySettings' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:375:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:273:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:278:32: style: The function 'getDisplaySettings' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:376:40: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:278:32: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:280:12: style: The function 'getXUnit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:313:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:280:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:282:12: style: The function 'getYUnit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:318:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:282:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:284:10: style: The function 'setXUnit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:300:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:284:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:286:10: style: The function 'setYUnit' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:308:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:286:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:288:10: style: The function 'collapseNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:366:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:288:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:294:10: style: The function 'isNodeCollapsed' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:367:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:294:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:300:10: style: The function 'addTreeDrawingListener' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:387:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:300:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:307:10: style: The function 'removeTreeDrawingListener' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:395:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:307:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:75:10: style: The function 'plot' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:335:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:75:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:141:0: style: The function 'getFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.h:339:23: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:141:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:143:0: style: The function 'getFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.h:346:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:143:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:145:0: style: The function 'removeFather' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.h:369:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:145:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:147:0: style: The function 'getSon' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.h:395:23: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:147:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:149:0: style: The function 'getSon' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.h:401:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:149:0: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/CladogramPlot.h:61:12: style: The function 'getBranchCursor' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:202:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/CladogramPlot.h:61:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/CladogramPlot.h:89:17: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:277:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/CladogramPlot.h:89:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/CladogramPlot.h:93:12: style: The function 'getWidth' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:323:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/CladogramPlot.h:93:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/CladogramPlot.h:94:12: style: The function 'getHeight' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:328:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/CladogramPlot.h:94:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/CladogramPlot.h:96:10: style: The function 'treeHasChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:320:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/CladogramPlot.h:96:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/CladogramPlot.h:107:10: style: The function 'drawDendrogram_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:78:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/CladogramPlot.h:107:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/PhylogramPlot.h:58:12: style: The function 'getBranchCursor' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:202:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/PhylogramPlot.h:58:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/PhylogramPlot.h:86:17: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:277:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/PhylogramPlot.h:86:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/PhylogramPlot.h:90:12: style: The function 'getWidth' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:323:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/PhylogramPlot.h:90:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/PhylogramPlot.h:91:12: style: The function 'getHeight' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawing.h:328:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/PhylogramPlot.h:91:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/PhylogramPlot.h:93:10: style: The function 'treeHasChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:320:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/PhylogramPlot.h:93:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/PhylogramPlot.h:104:10: style: The function 'drawDendrogram_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:78:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/PhylogramPlot.h:104:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h:175:39: warning: Member variable 'BasicTreeDrawingDisplayControler::settings_' is not assigned a value in 'BasicTreeDrawingDisplayControler::operator='. [operatorEqVarError]
bpp-phyl-2.4.0/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h:162:5: style: Class 'BasicTreeDrawingDisplayControler' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:197:129: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:224:131: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:247:127: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:275:129: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:303:131: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:346:129: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:400:131: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:451:137: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:71:3: style: Class 'GCFrequenciesSet' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:95:8: style: The function 'setFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:100:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:95:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:98:8: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:198:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:98:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:140:8: style: The function 'setFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:100:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:140:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:143:8: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:198:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h:143:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:93:10: style: The function 'getSizeFromVector' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:69:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:93:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:109:27: style: The function 'getWordAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:74:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:109:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:119:10: style: The function 'getLength' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:84:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:119:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:136:22: style: The function 'getGeneticCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:69:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:136:22: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:143:8: style: The function 'setFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:100:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:143:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:145:24: style: The function 'getCodonAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:63:32: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:145:24: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:158:8: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:198:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:158:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:200:22: style: The function 'getGeneticCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:69:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:200:22: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:202:24: style: The function 'getCodonAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:63:32: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:202:24: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:212:8: style: The function 'setFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:100:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:212:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:215:8: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:198:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:215:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:277:24: style: The function 'getCodonAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:63:32: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:277:24: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:282:22: style: The function 'getGeneticCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:69:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:282:22: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:289:8: style: The function 'setFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:100:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:289:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:304:8: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:198:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:304:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:357:24: style: The function 'getCodonAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:63:32: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:357:24: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:359:22: style: The function 'getGeneticCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:69:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:359:22: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:364:8: style: The function 'updateFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:155:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:364:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:438:24: style: The function 'getCodonAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:63:32: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:438:24: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:440:22: style: The function 'getGeneticCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:69:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:440:22: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:446:8: style: The function 'updateFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:218:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:446:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Nhx.h:151:5: style: Class 'Nhx' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:116:0: style: Class 'bpp :: TreeTemplate < N >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:124:0: style: Class 'bpp :: TreeTemplate < N >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Newick.h:161:10: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:128:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Newick.h:161:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Newick.h:172:10: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:262:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Newick.h:172:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Newick.h:176:10: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:261:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Newick.h:176:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Newick.h:188:10: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:247:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Newick.h:188:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/NexusIoTree.h:109:10: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:128:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/NexusIoTree.h:109:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/NexusIoTree.h:120:10: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:262:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/NexusIoTree.h:120:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/NexusIoTree.h:124:10: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:261:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/NexusIoTree.h:124:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/NexusIoTree.h:136:10: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:247:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/NexusIoTree.h:136:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Nhx.h:188:10: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:128:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Nhx.h:188:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Nhx.h:199:10: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:262:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Nhx.h:199:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Nhx.h:203:10: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:261:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Nhx.h:203:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Nhx.h:215:10: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoTree.h:247:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Nhx.h:215:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Nhx.h:274:58: performance: Function parameter 'properties' should be passed by const reference. [passedByValue]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:133:14: style: The scope of the variable 'deb' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:133:19: style: The scope of the variable 'fin' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:134:14: style: The scope of the variable 'num' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:135:14: style: The scope of the variable 'po' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:135:18: style: The scope of the variable 'pf' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:135:22: style: The scope of the variable 'ppv' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:253:31: style: The scope of the variable 'pd' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:91:47: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:189:117: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:334:9: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RateDistribution/ExponentialDiscreteRateDistribution.h:52:5: style: Class 'ExponentialDiscreteRateDistribution' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:329:15: style: C-style pointer casting [cstyleCast]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:1935:10: style: The scope of the variable 'posp' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:1455:24: style: Variable 'v' is assigned a value that is never used. [unreadVariable]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:220:127: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:265:127: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:314:127: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:392:127: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:416:127: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:477:127: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:508:127: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:545:137: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:549:135: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:600:131: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:722:131: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:989:127: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:1003:129: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:1143:129: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:1253:129: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:1359:129: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:1419:10: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:1428:14: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:1439:10: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:1458:29: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp:1503:129: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/DSO78.h:96:12: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/JCprot.h:170:13: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/JTT92.h:96:12: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LG08.h:94:11: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/WAG01.h:100:12: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/MG94.h:96:17: performance: Technically the member function 'bpp::MG94::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:97:17: performance: Technically the member function 'bpp::YNGP_M1::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:96:17: performance: Technically the member function 'bpp::YNGP_M2::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:95:17: performance: Technically the member function 'bpp::YNGP_M3::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:98:17: performance: Technically the member function 'bpp::YNGP_M7::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:100:17: performance: Technically the member function 'bpp::YNGP_M8::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:109:17: performance: Technically the member function 'bpp::YNGP_M9::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:107:17: performance: Technically the member function 'bpp::YNGP_M10::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YN98.h:107:17: performance: Technically the member function 'bpp::YN98::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/KCM.h:115:27: performance: Technically the member function 'bpp::KCM::getFrequenciesSet' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:169:17: performance: Technically the member function 'bpp::RE08::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/F84.h:207:17: performance: Technically the member function 'bpp::F84::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/RN95.h:166:15: performance: Technically the member function 'bpp::RN95::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/GTR.h:162:17: performance: Technically the member function 'bpp::GTR::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:142:15: performance: Technically the member function 'bpp::RN95s::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:208:17: performance: Technically the member function 'bpp::HKY85::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/SSR.h:116:17: performance: Technically the member function 'bpp::SSR::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:151:15: performance: Technically the member function 'bpp::JCnuc::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:161:8: performance: Technically the member function 'bpp::JCnuc::setFreqFromData' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/T92.h:182:15: performance: Technically the member function 'bpp::T92::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/K80.h:173:17: performance: Technically the member function 'bpp::K80::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/K80.h:183:10: performance: Technically the member function 'bpp::K80::setFreqFromData' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/TN93.h:161:17: performance: Technically the member function 'bpp::TN93::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/L95.h:113:15: performance: Technically the member function 'bpp::L95::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:114:17: performance: Technically the member function 'bpp::LLG08_EX2::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:119:17: performance: Technically the member function 'bpp::LLG08_EX3::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:116:17: performance: Technically the member function 'bpp::LLG08_UL2::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:119:17: performance: Technically the member function 'bpp::LLG08_UL3::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:121:17: performance: Technically the member function 'bpp::LLG08_EHO::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:115:17: performance: Technically the member function 'bpp::LG10_EX_EHO::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:140:15: performance: Technically the member function 'bpp::BinarySubstitutionModel::getName' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:144:10: performance: Technically the member function 'bpp::BinarySubstitutionModel::getNumberOfStates' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:74:5: style: Class 'ModelList' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:61:5: style: Class 'AbstractBiblioMixedSubstitutionModel' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/JCnuc.h:137:3: style: Class 'JCnuc' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:101:5: style: Class 'LLG08_EX2' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:106:5: style: Class 'LLG08_EX3' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/DSO78.h:78:5: style: Class 'DSO78' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:101:5: style: Class 'LLG08_UL2' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/JCprot.h:149:5: style: Class 'JCprot' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:105:5: style: Class 'LLG08_UL3' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/JTT92.h:78:5: style: Class 'JTT92' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LG08.h:76:5: style: Class 'LG08' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/WAG01.h:82:5: style: Class 'WAG01' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:105:5: style: Class 'LLG08_EHO' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:100:5: style: Class 'LG10_EX_EHO' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:58:5: style: Class 'OneChangeTransitionModel' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:166:8: style: The function 'updateMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:357:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:166:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:227:18: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:258:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:227:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:258:16: style: The function 'setFreq' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:305:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:258:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/WordSubstitutionModel.h:117:16: style: The function 'updateMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:357:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/WordSubstitutionModel.h:117:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/WordSubstitutionModel.h:118:16: style: The function 'completeMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:172:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/WordSubstitutionModel.h:118:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/WordSubstitutionModel.h:127:23: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:137:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/WordSubstitutionModel.h:127:23: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:121:10: style: The function 'fillBasicGenerator' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:179:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h:121:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.h:138:10: style: The function 'completeMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:172:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.h:138:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.h:142:25: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:137:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.h:142:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:69:29: style: The function 'getAlphabetStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:144:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:69:29: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:71:21: style: The function 'getStateMap' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:149:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:71:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:73:9: style: The function 'getAlphabetStateAsInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:171:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:73:9: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:75:17: style: The function 'getAlphabetStateAsChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:177:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:75:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:77:25: style: The function 'getModelStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:157:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:77:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:79:25: style: The function 'getModelStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:165:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:79:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:82:21: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:248:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:82:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:84:12: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:258:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:84:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:86:27: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:315:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:86:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:92:25: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:137:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:92:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:117:12: style: The function 'freq' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:183:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:117:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:119:12: style: The function 'Pij_t' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:189:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:119:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:120:12: style: The function 'dPij_dt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:196:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:120:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:121:12: style: The function 'd2Pij_dt2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:203:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:121:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:123:20: style: The function 'getFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:209:28: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:123:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:125:27: style: The function 'getPij_t' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:229:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:125:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:127:27: style: The function 'getdPij_dt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:236:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:127:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:129:27: style: The function 'getd2Pij_dt2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:243:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:129:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:131:12: style: The function 'getInitValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:273:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:131:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:136:12: style: The function 'getRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:278:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:136:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:141:10: style: The function 'setRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:284:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:141:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:146:10: style: The function 'setFreqFromData' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:300:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:146:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:151:10: style: The function 'setFreq' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:308:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:151:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:156:10: style: The function 'computeFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:216:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:156:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:166:10: style: The function 'computeFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:223:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:166:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:178:14: style: The function 'getFrequencies_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:319:22: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:178:14: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:195:28: style: The function 'getModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/WrappedModel.h:60:36: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:195:28: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:202:22: style: The function 'getModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/WrappedModel.h:63:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:202:22: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:144:37: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:88:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:144:37: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:153:10: style: The function 'completeMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:172:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:153:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:156:10: style: The function 'updateMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:439:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:156:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:158:24: style: The function 'getGeneticCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:90:32: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:158:24: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:166:20: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:74:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:166:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.h:137:45: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:64:41: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.h:137:45: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.h:147:12: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:74:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.h:147:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.h:149:27: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:76:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.h:149:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:109:53: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:64:41: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:109:53: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:126:12: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:74:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:126:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:128:27: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:76:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h:128:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:133:10: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:166:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:133:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:139:25: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:76:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:139:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/MG94.h:93:11: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h:81:46: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/MG94.h:93:11: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h:99:48: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:64:41: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h:99:48: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h:116:12: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:74:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h:116:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h:118:27: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:76:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h:118:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:151:10: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:166:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:151:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:157:25: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:76:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:157:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/GY94.h:100:11: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h:81:46: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/GY94.h:100:11: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/GY94.h:104:17: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:137:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/GY94.h:104:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:69:51: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:67:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:69:51: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:81:30: style: The function 'getNModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:74:38: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:81:30: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:86:24: style: The function 'getNModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:76:32: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:86:24: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:94:12: style: The function 'getNProbability' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:82:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:94:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:105:32: style: The function 'getProbabilities' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:84:40: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:105:32: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:114:10: style: The function 'setNProbability' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:90:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:114:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:123:12: style: The function 'getNumberOfModels' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:92:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:123:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:132:10: style: The function 'setVRates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:116:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:132:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:141:10: style: The function 'normalizeVRates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:123:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:141:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:150:32: style: The function 'getVRates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:98:40: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:150:32: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:158:12: style: The function 'getNRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:104:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:158:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:170:30: style: The function 'getSubModelWithName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:132:38: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:170:30: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:180:10: style: The function 'getSubmodelNumbers' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:140:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:180:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:194:27: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:315:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:194:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M.h:91:21: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:69:51: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M.h:91:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:80:14: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M.h:91:21: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:80:14: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:79:14: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M.h:91:21: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:79:14: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:78:14: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M.h:91:21: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:78:14: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:80:14: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M.h:91:21: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:80:14: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:83:14: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M.h:91:21: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:83:14: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:86:14: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M.h:91:21: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:86:14: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:86:15: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M.h:91:21: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:86:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YN98.h:104:11: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h:81:46: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YN98.h:104:11: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h:102:15: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/WordSubstitutionModel.h:127:23: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h:102:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.h:127:43: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:64:41: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.h:127:43: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.h:137:12: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:74:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.h:137:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.h:160:27: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:76:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.h:160:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.h:104:46: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:64:41: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.h:104:46: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.h:123:12: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:74:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.h:123:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.h:127:27: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:76:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.h:127:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.h:101:40: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:64:41: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.h:101:40: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.h:111:12: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:74:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.h:111:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.h:113:27: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:76:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.h:113:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.h:122:40: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:64:41: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.h:122:40: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.h:132:12: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:74:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.h:132:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.h:134:27: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:76:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.h:134:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:98:44: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:64:41: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:98:44: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:117:12: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:74:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:117:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:121:27: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:76:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:121:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:149:12: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:166:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:149:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h:174:46: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:88:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h:174:46: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h:183:10: style: The function 'completeMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:172:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h:183:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h:187:24: style: The function 'getGeneticCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:90:32: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h:187:24: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h:196:20: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:74:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h:196:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.h:199:10: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h:196:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.h:199:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.h:205:25: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:76:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.h:205:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.h:181:12: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h:196:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.h:181:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/KCM.h:101:10: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h:81:46: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/KCM.h:101:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/SENCA.h:112:17: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:137:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/SENCA.h:112:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/SENCA.h:114:12: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:166:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/SENCA.h:114:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/SENCA.h:130:10: style: The function 'setFreq' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:308:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/SENCA.h:130:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/SENCA.h:132:27: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:315:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/SENCA.h:132:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:158:11: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:471:50: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:158:11: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:201:10: style: The function 'updateMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:496:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:201:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:244:12: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:258:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:244:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:281:12: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:258:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:281:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:311:16: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:88:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:311:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:318:24: style: The function 'getGeneticCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:90:32: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:318:24: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:322:12: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:74:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:322:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:326:12: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:258:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:326:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:328:27: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:76:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RE08.h:328:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/TS98.h:103:17: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:137:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/TS98.h:103:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/TS98.h:105:12: style: The function 'getRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:278:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/TS98.h:105:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/TS98.h:107:10: style: The function 'setRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:284:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/TS98.h:107:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/TS98.h:109:10: style: The function 'addRateParameter' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:286:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/TS98.h:109:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/TS98.h:112:10: style: The function 'updateRatesModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:336:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/TS98.h:112:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/G2001.h:113:15: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:137:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/G2001.h:113:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/G2001.h:120:8: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:316:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/G2001.h:120:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/G2001.h:139:10: style: The function 'getRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:278:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/G2001.h:139:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/G2001.h:141:8: style: The function 'setRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:284:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/G2001.h:141:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/G2001.h:143:8: style: The function 'addRateParameter' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:286:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/G2001.h:143:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/G2001.h:146:8: style: The function 'updateRatesModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h:336:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/G2001.h:146:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/YpR.h:177:10: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:258:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/YpR.h:177:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/YpR.h:179:16: style: The function 'updateMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:357:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/YpR.h:179:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/YpR.h:183:8: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:316:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/YpR.h:183:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/YpR.h:232:15: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:137:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/YpR.h:232:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/YpR.h:234:8: style: The function 'updateMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/YpR.h:179:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/YpR.h:234:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/YpR.h:280:15: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:137:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/YpR.h:280:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/YpR.h:282:8: style: The function 'updateMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/YpR.h:179:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/YpR.h:282:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:103:16: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:69:51: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:103:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:108:16: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:69:51: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:108:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:103:16: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:69:51: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:103:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:107:16: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:69:51: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:107:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:103:16: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:69:51: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:103:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:107:16: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:69:51: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:107:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:102:18: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:69:51: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:102:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:129:28: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:471:50: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:129:28: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:147:8: style: The function 'updateMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:496:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:147:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:97:28: style: The function 'getModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/WrappedModel.h:60:36: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:97:28: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:102:10: style: The function 'computeFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:216:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:102:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:112:10: style: The function 'computeFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:223:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:112:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:124:14: style: The function 'getFrequencies_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:319:22: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:124:14: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:135:22: style: The function 'getModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/WrappedModel.h:63:30: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:135:22: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:141:18: style: The function 'addRateParameter' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:286:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:141:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:79:31: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:89:59: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:79:31: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:82:12: style: The function 'Pij_t' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:189:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:82:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:83:12: style: The function 'dPij_dt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:196:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:83:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:84:12: style: The function 'd2Pij_dt2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:203:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:84:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:86:27: style: The function 'getPij_t' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:229:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:86:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:88:27: style: The function 'getdPij_dt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:236:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:88:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:90:27: style: The function 'getd2Pij_dt2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:243:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:90:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:93:12: style: The function 'freq' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:183:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:93:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:95:20: style: The function 'getFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:209:28: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:95:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:97:27: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:315:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:97:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:99:10: style: The function 'setFreqFromData' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:300:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:99:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:104:18: style: The function 'setFreq' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:308:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:104:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:109:12: style: The function 'getRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:278:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:109:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:111:10: style: The function 'setRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:284:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:111:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:113:12: style: The function 'getInitValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:273:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:113:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:115:17: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:92:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.h:115:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AnonymousSubstitutionModel.h:71:33: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:248:40: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AnonymousSubstitutionModel.h:71:33: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AnonymousSubstitutionModel.h:75:17: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:137:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AnonymousSubstitutionModel.h:75:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AnonymousSubstitutionModel.h:77:12: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:258:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AnonymousSubstitutionModel.h:77:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AnonymousSubstitutionModel.h:81:10: style: The function 'updateMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:357:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AnonymousSubstitutionModel.h:81:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:147:39: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:89:59: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:147:39: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:151:10: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h:147:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:151:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:157:12: style: The function 'Pij_t' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:189:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:157:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:158:12: style: The function 'dPij_dt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:196:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:158:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:159:12: style: The function 'd2Pij_dt2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:203:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:159:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:161:27: style: The function 'getPij_t' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:229:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:161:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:163:27: style: The function 'getdPij_dt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:236:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:163:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:165:27: style: The function 'getd2Pij_dt2' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:243:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:165:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:168:12: style: The function 'freq' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:183:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:168:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:170:20: style: The function 'getFrequencies' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:209:28: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:170:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:172:27: style: The function 'getFrequenciesSet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:315:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:172:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:174:10: style: The function 'setFreqFromData' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:300:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:174:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:179:18: style: The function 'setFreq' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:308:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:179:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:184:12: style: The function 'getRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:278:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:184:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:186:10: style: The function 'setRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:284:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:186:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:188:12: style: The function 'getInitValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:273:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:188:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:192:17: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWrappedModel.h:92:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h:192:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:139:37: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:248:40: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:139:37: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:149:29: style: The function 'getAlphabetStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:144:37: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:149:29: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:154:25: style: The function 'getModelStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:157:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:154:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:159:25: style: The function 'getModelStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:165:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:159:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:164:9: style: The function 'getAlphabetStateAsInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:171:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:164:9: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:168:17: style: The function 'getAlphabetStateAsChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:177:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:168:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:173:21: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:248:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:173:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:178:21: style: The function 'getStateMap' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:149:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:178:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:218:10: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:316:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:218:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:227:12: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:258:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:227:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:234:10: style: The function 'updateMatrices' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:357:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:234:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:236:17: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:137:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:236:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:246:10: style: The function 'addRateParameter' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModel.h:286:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:246:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:256:10: style: The function 'setRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:427:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:256:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:258:12: style: The function 'getRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:425:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h:258:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp:135:127: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:63:3: style: Class 'PhylipDistanceMatrixFormat' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoDistanceMatrix.h:139:27: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoDistanceMatrix.h:86:27: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoDistanceMatrix.h:139:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoDistanceMatrix.h:146:27: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoDistanceMatrix.h:94:27: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoDistanceMatrix.h:146:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoDistanceMatrix.h:160:16: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoDistanceMatrix.h:117:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoDistanceMatrix.h:160:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoDistanceMatrix.h:167:16: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoDistanceMatrix.h:125:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoDistanceMatrix.h:167:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:70:19: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoDistanceMatrix.h:139:27: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:70:19: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:74:19: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoDistanceMatrix.h:146:27: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:74:19: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:80:8: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/IoDistanceMatrix.h:167:16: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h:80:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/NexusIoTree.cpp:225:89: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/NexusIoTree.cpp:290:89: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Nhx.cpp:209:34: style: The scope of the variable 'firstP' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Io/Nhx.cpp:485:54: performance: Function parameter 'properties' should be passed by const reference. [passedByValue]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:108:3: performance: Variable 'nodes_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:115:3: performance: Variable 'nodes_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:208:112: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:173:30: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:107:17: style: The function 'getNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:76:25: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:107:17: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:108:10: style: The function 'setNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:85:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:108:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:223:12: style: The function 'getArrayPosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:109:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:223:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:227:12: style: The function 'getRootArrayPosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:110:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:227:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:259:12: style: The function 'getNumberOfDistinctSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:117:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:259:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:260:12: style: The function 'getNumberOfSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:122:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:260:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:261:12: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:127:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h:261:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:141:5: style: Exception should be caught by reference. [catchExceptionByValue]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp:244:5: style: Exception should be caught by reference. [catchExceptionByValue]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:180:26: style: The scope of the variable 'pm' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:225:10: style: The scope of the variable 'x' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:249:10: style: The scope of the variable 'x' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:426:10: style: The scope of the variable 'x' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:490:10: style: The scope of the variable 'x' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:490:13: style: The scope of the variable 'x2' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:174:10: performance: Technically the member function 'bpp::DRHomogeneousMixedTreeLikelihood::getSecondOrderDerivative' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:181:8: style: The function 'fireParameterChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:235:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:181:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:185:16: style: The function 'computeTreeDLikelihoods' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:230:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:185:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:188:16: style: The function 'computeLikelihoodAtNode_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:213:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:188:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:195:16: style: The function 'computeSubtreeLikelihoodPostfix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:219:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:195:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:197:16: style: The function 'computeSubtreeLikelihoodPrefix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:225:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:197:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:199:16: style: The function 'computeRootLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:227:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:199:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:201:16: style: The function 'computeTreeD2LikelihoodAtNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:232:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:201:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:202:16: style: The function 'computeTreeD2Likelihoods' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:233:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:202:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:204:8: style: The function 'resetLikelihoodArrays' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:237:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:204:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:211:16: style: The function 'displayLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:244:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:211:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:297:10: style: The scope of the variable 'dLi' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:383:10: style: The scope of the variable 'd2Li' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:323:10: style: The scope of the variable 'dLi' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:450:10: style: The scope of the variable 'd2Li' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:644:21: style: The scope of the variable 'dlx' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:644:26: style: The scope of the variable 'd2lx' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:790:21: style: The scope of the variable 'dlx' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:790:26: style: The scope of the variable 'd2lx' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:147:10: style: The function 'setData' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:177:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:147:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:148:12: style: The function 'getLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:278:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:148:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:149:12: style: The function 'getLogLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:285:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:149:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:150:12: style: The function 'getLikelihoodForASite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:217:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:150:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:151:12: style: The function 'getLogLikelihoodForASite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:225:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:151:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:152:12: style: The function 'getSiteIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:391:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:152:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:163:12: style: The function 'getLikelihoodForASiteForARateClass' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:86:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:163:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:164:12: style: The function 'getLogLikelihoodForASiteForARateClass' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:95:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:164:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:165:12: style: The function 'getLikelihoodForASiteForARateClassForAState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:105:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:165:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:166:12: style: The function 'getLogLikelihoodForASiteForARateClassForAState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h:115:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:166:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:206:31: style: The function 'getLikelihoodData' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRTreeLikelihood.h:92:39: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:206:31: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:207:37: style: The function 'getLikelihoodData' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRTreeLikelihood.h:93:45: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:207:37: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:209:18: style: The function 'computeLikelihoodAtNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRTreeLikelihood.h:102:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:209:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp:128:20: style: The scope of the variable 'w' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:87:91: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:56:5: style: Class 'GlobalClockTreeLikelihoodFunctionWrapper' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:51:10: style: The scope of the variable 'cumProb' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:52:10: style: The scope of the variable 'r' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:79:3: style: Class 'MarginalAncestralStateReconstruction' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:143:25: style: The function 'getAncestralStatesForNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/AncestralStateReconstruction.h:78:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:143:25: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:149:41: style: The function 'getAllAncestralStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/AncestralStateReconstruction.h:88:49: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:149:41: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:164:15: style: The function 'getAncestralSequenceForNode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/AncestralStateReconstruction.h:96:23: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:164:15: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:99:68: style: Function 'appendModel' argument 1 names different: declaration 'treelikelihood' definition 'treeLikelihood'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h:104:47: note: Function 'appendModel' argument 1 names different: declaration 'treelikelihood' definition 'treeLikelihood'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp:99:68: note: Function 'appendModel' argument 1 names different: declaration 'treelikelihood' definition 'treeLikelihood'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RASTools.cpp:65:77: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:149:87: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:215:12: performance: Technically the member function 'bpp::RHomogeneousTreeLikelihood::getSecondOrderDerivative' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:142:12: performance: Technically the member function 'bpp::RHomogeneousClockTreeLikelihood::getFirstOrderDerivative' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:201:41: note: Technically the member function 'bpp::RHomogeneousClockTreeLikelihood::getFirstOrderDerivative' can be static.
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:142:12: note: Technically the member function 'bpp::RHomogeneousClockTreeLikelihood::getFirstOrderDerivative' can be static.
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:143:12: performance: Technically the member function 'bpp::RHomogeneousClockTreeLikelihood::getSecondOrderDerivative' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:210:41: note: Technically the member function 'bpp::RHomogeneousClockTreeLikelihood::getSecondOrderDerivative' can be static.
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:143:12: note: Technically the member function 'bpp::RHomogeneousClockTreeLikelihood::getSecondOrderDerivative' can be static.
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:144:12: performance: Technically the member function 'bpp::RHomogeneousClockTreeLikelihood::getSecondOrderDerivative' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:172:26: style: The scope of the variable 'pm' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:157:18: style: The function 'getDLikelihoodForASiteForARateClass' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:225:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:157:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:159:16: style: The function 'computeTreeDLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:233:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:159:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:161:18: style: The function 'getD2LikelihoodForASiteForARateClass' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:235:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:161:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:163:16: style: The function 'computeTreeD2Likelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:243:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:163:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:171:16: style: The function 'computeSubtreeLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:253:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:171:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:173:16: style: The function 'computeDownSubtreeDLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:254:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:173:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:175:16: style: The function 'computeDownSubtreeD2Likelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:256:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:175:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:193:16: style: The function 'displayLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:265:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:193:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:111:57: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:196:10: performance: Technically the member function 'bpp::RHomogeneousTreeLikelihood::setParameters' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:248:34: note: Technically the member function 'bpp::RHomogeneousTreeLikelihood::setParameters' can be static.
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:196:10: note: Technically the member function 'bpp::RHomogeneousTreeLikelihood::setParameters' can be static.
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:147:7: style: The scope of the variable 'desc' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:184:53: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:212:77: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:262:81: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:284:81: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:302:73: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:322:73: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:364:75: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:418:75: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:439:73: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:215:12: performance: Technically the member function 'bpp::RNonHomogeneousTreeLikelihood::getSecondOrderDerivative' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:269:47: style: Technically the member function 'bpp::RNonHomogeneousMixedTreeLikelihood::getHyperNode' can be const. [functionConst]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:246:8: style: The function 'computeTreeDLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:233:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:246:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:248:8: style: The function 'computeTreeD2Likelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:243:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:248:8: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:278:16: style: The function 'computeSubtreeLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:253:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:278:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:280:16: style: The function 'computeDownSubtreeDLikelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:255:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:280:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:282:16: style: The function 'computeDownSubtreeD2Likelihood' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:257:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:282:16: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:116:63: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:198:10: performance: Technically the member function 'bpp::RNonHomogeneousTreeLikelihood::setParameters' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:252:37: note: Technically the member function 'bpp::RNonHomogeneousTreeLikelihood::setParameters' can be static.
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:198:10: note: Technically the member function 'bpp::RNonHomogeneousTreeLikelihood::setParameters' can be static.
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:79:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:88:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp:89:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:182:99: style: Function 'computeExpectations' argument 2 names different: declaration 'leangth' definition 'length'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionMethods.h:153:81: note: Function 'computeExpectations' argument 2 names different: declaration 'leangth' definition 'length'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp:182:99: note: Function 'computeExpectations' argument 2 names different: declaration 'leangth' definition 'length'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Reward.h:179:10: style: The function 'hasAlphabetIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Reward.h:82:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Reward.h:179:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Reward.h:188:10: style: The function 'setAlphabetIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Reward.h:101:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Reward.h:188:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Reward.h:194:27: style: The function 'getAlphabetIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Reward.h:88:35: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Reward.h:194:27: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Reward.h:196:21: style: The function 'getAlphabetIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Reward.h:95:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Reward.h:196:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionReward.h:98:12: style: The function 'getReward' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Reward.h:127:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionReward.h:98:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionReward.h:100:21: style: The function 'getAllRewards' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Reward.h:136:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionReward.h:100:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionReward.h:110:10: style: The function 'setSubstitutionModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Reward.h:143:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionReward.h:110:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionReward.h:117:10: style: The function 'alphabetIndexHasChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Reward.h:199:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionReward.h:117:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp:82:33: style: Variable 'supportedStates' is assigned a value that is never used. [unreadVariable]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:131:18: warning: Virtual function 'setNumberOfSites' is called from constructor 'ProbabilisticRewardMapping(const Tree&tree,const Reward*reward,long numberOfSites)' at line 88. Dynamic binding is not used. [virtualCallInConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:88:7: note: Calling setNumberOfSites
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:131:18: note: setNumberOfSites is a virtual method
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:96:5: style: Class 'ProbabilisticRewardMapping' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:176:10: style: The function 'isEmpty' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:79:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:176:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:192:9: style: The function 'getSitePosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:95:17: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:192:9: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:198:10: style: The function 'setSitePosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:115:18: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:198:10: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:204:12: style: The function 'getNumberOfSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:84:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:204:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:206:12: style: The function 'getNumberOfBranches' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:89:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:206:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:218:33: style: The function 'getBranchLengths' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:100:33: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:218:33: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:226:20: style: The function 'getNodeIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:106:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/Mapping.h:226:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:143:18: warning: Virtual function 'setNumberOfSites' is called from constructor 'ProbabilisticSubstitutionMapping(const Tree&tree,const SubstitutionCount*sc,long numberOfSites)' at line 89. Dynamic binding is not used. [virtualCallInConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:89:7: note: Calling setNumberOfSites
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:143:18: note: setNumberOfSites is a virtual method
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:97:5: style: Class 'ProbabilisticSubstitutionMapping' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:158:14: style: The scope of the variable 'first' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:202:12: style: The scope of the variable 'first' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:264:10: style: The scope of the variable 'first' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:1760:37: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:1816:37: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:2049:37: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:2173:37: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:2301:37: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:2408:37: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:168:14: style: The scope of the variable 'first' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:212:12: style: The scope of the variable 'first' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:275:10: style: The scope of the variable 'first' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:481:14: style: The scope of the variable 'first' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:525:12: style: The scope of the variable 'first' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:588:10: style: The scope of the variable 'first' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:770:14: style: The scope of the variable 'first' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:814:12: style: The scope of the variable 'first' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:876:10: style: The scope of the variable 'first' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:1896:13: style: Function 'computeCountsPerSitePerBranch' argument 5 names different: declaration 'array' definition 'result'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:469:17: note: Function 'computeCountsPerSitePerBranch' argument 5 names different: declaration 'array' definition 'result'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:1896:13: note: Function 'computeCountsPerSitePerBranch' argument 5 names different: declaration 'array' definition 'result'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:1940:51: style: Unused variable: rmap [unusedVariable]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:1760:48: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:1816:47: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:2049:47: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:2173:47: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:2301:47: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
bpp-phyl-2.4.0/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:2408:47: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp:51:120: style: Function 'AbstractBiblioMixedSubstitutionModel' argument 1 names different: declaration 'model' definition 'mod2'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:63:86: note: Function 'AbstractBiblioMixedSubstitutionModel' argument 1 names different: declaration 'model' definition 'mod2'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp:51:120: note: Function 'AbstractBiblioMixedSubstitutionModel' argument 1 names different: declaration 'model' definition 'mod2'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp:57:131: style: Function 'operator=' argument 1 names different: declaration 'model' definition 'mod2'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h:65:97: note: Function 'operator=' argument 1 names different: declaration 'model' definition 'mod2'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp:57:131: note: Function 'operator=' argument 1 names different: declaration 'model' definition 'mod2'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp:129:70: style: Function 'setFreq' argument 1 names different: declaration 'frequ' definition 'm'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h:108:41: note: Function 'setFreq' argument 1 names different: declaration 'frequ' definition 'm'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp:129:70: note: Function 'setFreq' argument 1 names different: declaration 'frequ' definition 'm'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:219:14: style: The scope of the variable 'val' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:408:20: style: The scope of the variable 'e' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:479:20: style: The scope of the variable 'e' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:280:16: style: Unused variable: vnull [unusedVariable]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:156:12: style: The scope of the variable 'x' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:50:22: style: Function 'AbstractCodonSubstitutionModel' argument 3 names different: declaration 'st' definition 'prefix'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:100:26: note: Function 'AbstractCodonSubstitutionModel' argument 3 names different: declaration 'st' definition 'prefix'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:50:22: note: Function 'AbstractCodonSubstitutionModel' argument 3 names different: declaration 'st' definition 'prefix'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:93:22: style: Function 'AbstractCodonSubstitutionModel' argument 5 names different: declaration 'st' definition 'prefix'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:122:26: note: Function 'AbstractCodonSubstitutionModel' argument 5 names different: declaration 'st' definition 'prefix'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp:93:22: note: Function 'AbstractCodonSubstitutionModel' argument 5 names different: declaration 'st' definition 'prefix'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp:50:22: style: Function 'AbstractKroneckerCodonSubstitutionModel' argument 3 names different: declaration 'st' definition 'prefix'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h:95:26: note: Function 'AbstractKroneckerCodonSubstitutionModel' argument 3 names different: declaration 'st' definition 'prefix'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp:50:22: note: Function 'AbstractKroneckerCodonSubstitutionModel' argument 3 names different: declaration 'st' definition 'prefix'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp:75:22: style: Function 'AbstractKroneckerCodonSubstitutionModel' argument 4 names different: declaration 'st' definition 'prefix'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h:113:26: note: Function 'AbstractKroneckerCodonSubstitutionModel' argument 4 names different: declaration 'st' definition 'prefix'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp:75:22: note: Function 'AbstractKroneckerCodonSubstitutionModel' argument 4 names different: declaration 'st' definition 'prefix'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp:101:22: style: Function 'AbstractKroneckerCodonSubstitutionModel' argument 5 names different: declaration 'st' definition 'prefix'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h:133:26: note: Function 'AbstractKroneckerCodonSubstitutionModel' argument 5 names different: declaration 'st' definition 'prefix'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp:101:22: note: Function 'AbstractKroneckerCodonSubstitutionModel' argument 5 names different: declaration 'st' definition 'prefix'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp:149:22: style: Function 'AbstractKroneckerCodonSubstitutionModel' argument 6 names different: declaration 'st' definition 'prefix'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h:156:26: note: Function 'AbstractKroneckerCodonSubstitutionModel' argument 6 names different: declaration 'st' definition 'prefix'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp:149:22: note: Function 'AbstractKroneckerCodonSubstitutionModel' argument 6 names different: declaration 'st' definition 'prefix'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:154:77: style: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h:132:52: note: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp:154:77: note: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:86:91: style: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h:147:50: note: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp:86:91: note: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:84:96: style: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h:129:50: note: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp:84:96: note: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp:78:80: style: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.h:117:52: note: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp:78:80: note: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.h:121:12: style: The function 'getCodonsMulRate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h:166:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.h:121:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp:114:100: style: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.h:195:50: note: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp:114:100: note: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp:105:89: style: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.h:177:52: note: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp:105:89: note: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/SENCA.cpp:80:55: style: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/SENCA.h:110:52: note: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/SENCA.cpp:80:55: note: Function 'fireParameterChanged' argument 1 names different: declaration 'parameterlist' definition 'parameters'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/SENCA.cpp:113:55: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/SENCA.cpp:119:49: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:92:111: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:59:14: style: Checking if unsigned variable 'nbBeta' is less than zero. [unsignedLessThanZero]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:61:15: style: Checking if unsigned variable 'nbGamma' is less than zero. [unsignedLessThanZero]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:112:111: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:97:111: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:52:82: style: Function 'YNGP_M3' argument 3 names different: declaration 'nclass' definition 'nbOmega'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:76:77: note: Function 'YNGP_M3' argument 3 names different: declaration 'nclass' definition 'nbOmega'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:52:82: note: Function 'YNGP_M3' argument 3 names different: declaration 'nclass' definition 'nbOmega'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:115:111: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:57:14: style: Checking if unsigned variable 'nclass' is less than zero. [unsignedLessThanZero]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:97:111: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:57:14: style: Checking if unsigned variable 'nclass' is less than zero. [unsignedLessThanZero]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:54:82: style: Function 'YNGP_M8' argument 3 names different: declaration 'nbclass' definition 'nclass'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:81:77: note: Function 'YNGP_M8' argument 3 names different: declaration 'nbclass' definition 'nclass'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:54:82: note: Function 'YNGP_M8' argument 3 names different: declaration 'nbclass' definition 'nclass'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:108:111: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:59:14: style: Checking if unsigned variable 'nbBeta' is less than zero. [unsignedLessThanZero]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:61:15: style: Checking if unsigned variable 'nbGamma' is less than zero. [unsignedLessThanZero]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:111:111: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:473:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:189:19: style: The scope of the variable 'i2' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:222:22: style: The scope of the variable 's' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:369:16: style: The scope of the variable 'i2' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:337:61: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:155:16: warning: Virtual function 'updateFrequencies' is called from constructor 'WordFromIndependentFrequenciesSet(const WordAlphabet*pWA,const std::vector<FrequenciesSet*>&freqVector,const std::string&prefix="",const std::string&name="WordFromIndependent")' at line 99. Dynamic binding is not used. [virtualCallInConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:99:3: note: Calling updateFrequencies
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:155:16: note: updateFrequencies is a virtual method
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:155:16: warning: Virtual function 'updateFrequencies' is called from constructor 'WordFromIndependentFrequenciesSet(const CodonAlphabet*pWA,const std::vector<FrequenciesSet*>&freqVector,const std::string&prefix="",const std::string&name="WordFromIndependent")' at line 124. Dynamic binding is not used. [virtualCallInConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:124:3: note: Calling updateFrequencies
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:155:16: note: updateFrequencies is a virtual method
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:155:16: warning: Virtual function 'updateFrequencies' is called from copy constructor 'WordFromIndependentFrequenciesSet(const WordFromIndependentFrequenciesSet&iwfs)' at line 136. Dynamic binding is not used. [virtualCallInConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:136:3: note: Calling updateFrequencies
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:155:16: note: updateFrequencies is a virtual method
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:218:16: warning: Virtual function 'updateFrequencies' is called from constructor 'WordFromUniqueFrequenciesSet(const WordAlphabet*pWA,FrequenciesSet*pabsfreq,const std::string&prefix="",const std::string&name="WordFromUnique")' at line 300. Dynamic binding is not used. [virtualCallInConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:300:3: note: Calling updateFrequencies
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:218:16: note: updateFrequencies is a virtual method
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:218:16: warning: Virtual function 'updateFrequencies' is called from constructor 'WordFromUniqueFrequenciesSet(const CodonAlphabet*pWA,FrequenciesSet*pabsfreq,const std::string&prefix="",const std::string&name="WordFromUnique")' at line 324. Dynamic binding is not used. [virtualCallInConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:324:3: note: Calling updateFrequencies
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:218:16: note: updateFrequencies is a virtual method
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:218:16: warning: Virtual function 'updateFrequencies' is called from copy constructor 'WordFromUniqueFrequenciesSet(const WordFromUniqueFrequenciesSet&iwfs)' at line 333. Dynamic binding is not used. [virtualCallInConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp:333:3: note: Calling updateFrequencies
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:218:16: note: updateFrequencies is a virtual method
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp:422:43: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp:424:51: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp:450:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp:469:7: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:307:13: style: The scope of the variable 'j' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:69:18: style: Unused variable: t [unusedVariable]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:97:69: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:117:69: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:148:77: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:166:77: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:178:69: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:205:69: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:230:71: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:315:71: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp:112:23: style: Expression 'exp(x) - 1' can be replaced by 'expm1(x)' to avoid loss of precision. [unpreciseMathCall]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:54:14: style: Checking if unsigned variable 'numReg' is less than zero. [unsignedLessThanZero]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:77:16: style: Checking if unsigned variable 'numReg' is less than zero. [unsignedLessThanZero]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp:68:156: performance: Function parameter 'vNumRegs' should be passed by const reference. [passedByValue]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp:117:12: style: The scope of the variable 'q2ik' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/CoalaCore.h:94:23: performance: Technically the member function 'bpp::CoalaCore::prodMatrixVector' can be static. [functionStatic]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:175:27: note: Technically the member function 'bpp::CoalaCore::prodMatrixVector' can be static.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/CoalaCore.h:94:23: note: Technically the member function 'bpp::CoalaCore::prodMatrixVector' can be static.
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:92:80: performance: Function parameter 'name' should be passed by const reference. [passedByValue]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:88:78: performance: Function parameter 'name' should be passed by const reference. [passedByValue]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:89:78: performance: Function parameter 'name' should be passed by const reference. [passedByValue]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:88:78: performance: Function parameter 'name' should be passed by const reference. [passedByValue]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:89:78: performance: Function parameter 'name' should be passed by const reference. [passedByValue]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:88:78: performance: Function parameter 'name' should be passed by const reference. [passedByValue]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:90:78: performance: Function parameter 'name' should be passed by const reference. [passedByValue]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp:160:65: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/WordSubstitutionModel.cpp:119:13: style: The scope of the variable 'y' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Model/WordSubstitutionModel.cpp:136:16: style: The scope of the variable 'j' can be reduced. [variableScope]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.cpp:64:109: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.cpp:66:113: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.cpp:81:108: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.cpp:87:112: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.cpp:72:13: warning: Member variable 'Node::sons_' is not assigned a value in 'Node::operator='. [operatorEqVarError]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.cpp:72:13: warning: Member variable 'Node::father_' is not assigned a value in 'Node::operator='. [operatorEqVarError]
bpp-phyl-2.4.0/src/Bpp/Phyl/Node.cpp:72:13: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-phyl-2.4.0/src/Bpp/Phyl/OptimizationTools.cpp:568:22: style: Function 'optimizeTreeNNI' argument 12 names different: declaration 'optMethod' definition 'optMethodDeriv'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/OptimizationTools.h:616:24: note: Function 'optimizeTreeNNI' argument 12 names different: declaration 'optMethod' definition 'optMethodDeriv'.
bpp-phyl-2.4.0/src/Bpp/Phyl/OptimizationTools.cpp:568:22: note: Function 'optimizeTreeNNI' argument 12 names different: declaration 'optMethod' definition 'optMethodDeriv'.
bpp-phyl-2.4.0/src/Bpp/Phyl/OptimizationTools.cpp:600:22: style: Function 'optimizeTreeNNI2' argument 12 names different: declaration 'optMethod' definition 'optMethodDeriv'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/OptimizationTools.h:670:24: note: Function 'optimizeTreeNNI2' argument 12 names different: declaration 'optMethod' definition 'optMethodDeriv'.
bpp-phyl-2.4.0/src/Bpp/Phyl/OptimizationTools.cpp:600:22: note: Function 'optimizeTreeNNI2' argument 12 names different: declaration 'optMethod' definition 'optMethodDeriv'.
bpp-phyl-2.4.0/src/Bpp/Phyl/OptimizationTools.cpp:83:3: performance: Variable 'brLen_' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp:71:43: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:93:16: warning: Virtual function 'computeScores' is called from constructor 'DRTreeParsimonyScore(const Tree&tree,const SiteContainer&data,bool verbose=true,bool includeGaps=false)' at line 61. Dynamic binding is not used. [virtualCallInConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp:61:3: note: Calling init_
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp:82:3: note: Calling computeScores
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:93:16: note: computeScores is a virtual method
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:93:16: warning: Virtual function 'computeScores' is called from constructor 'DRTreeParsimonyScore(const Tree&tree,const SiteContainer&data,const StateMap*statesMap,bool verbose=true)' at line 73. Dynamic binding is not used. [virtualCallInConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp:73:3: note: Calling init_
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp:82:3: note: Calling computeScores
bpp-phyl-2.4.0/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:93:16: note: computeScores is a virtual method
bpp-phyl-2.4.0/src/Bpp/Phyl/PatternTools.cpp:88:65: style: Function 'shrinkSiteSet' argument 1 names different: declaration 'sequenceSet' definition 'siteSet'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/PatternTools.h:91:62: note: Function 'shrinkSiteSet' argument 1 names different: declaration 'sequenceSet' definition 'siteSet'.
bpp-phyl-2.4.0/src/Bpp/Phyl/PatternTools.cpp:88:65: note: Function 'shrinkSiteSet' argument 1 names different: declaration 'sequenceSet' definition 'siteSet'.
bpp-phyl-2.4.0/src/Bpp/Phyl/PatternTools.cpp:63:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-phyl-2.4.0/src/Bpp/Phyl/PhyloStatistics.cpp:102:30: warning: Passing value 0 to log() leads to implementation-defined result. [wrongmathcall]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:301:5: style: Class 'AbstractMutationProcess' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:350:5: style: Class 'SimpleMutationProcess' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:371:7: style: Class 'SelfMutationProcess' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:320:12: style: The function 'mutate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:217:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:320:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:321:12: style: The function 'mutate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:225:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:321:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:322:12: style: The function 'getTimeBeforeNextMutationEvent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:233:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:322:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:323:12: style: The function 'evolve' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:243:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:323:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:324:18: style: The function 'detailedEvolve' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:254:26: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:324:18: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:325:30: style: The function 'getSubstitutionModel' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:261:38: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:325:30: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:361:12: style: The function 'evolve' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:243:20: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/MutationProcess.h:361:12: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:539:32: style: Function 'multipleEvolve' argument 1 names different: declaration 'initialStates' definition 'initialStateIndices'. [funcArgNamesDifferent]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:321:36: note: Function 'multipleEvolve' argument 1 names different: declaration 'initialStates' definition 'initialStateIndices'.
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:539:32: note: Function 'multipleEvolve' argument 1 names different: declaration 'initialStates' definition 'initialStateIndices'.
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:92:0: style: Class 'bpp :: NodeTemplate < SimData >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:97:0: style: Class 'bpp :: NodeTemplate < SimData >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/NodeTemplate.h:110:0: style: Class 'bpp :: NodeTemplate < SimData >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:116:0: style: Class 'bpp :: TreeTemplate < NodeTemplate < SimData > >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplate.h:124:0: style: Class 'bpp :: TreeTemplate < NodeTemplate < SimData > >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:202:11: style: The function 'simulateSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/SiteSimulator.h:62:19: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:202:11: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:204:11: style: The function 'simulateSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/SiteSimulator.h:63:19: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:204:11: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:206:11: style: The function 'simulateSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/SiteSimulator.h:64:19: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:206:11: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:208:11: style: The function 'simulateSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/SiteSimulator.h:65:19: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:208:11: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:210:30: style: The function 'getSequencesNames' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/SiteSimulator.h:66:38: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:210:30: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:232:20: style: The function 'simulate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/SequenceSimulator.h:66:28: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:232:20: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:240:21: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/SiteSimulator.h:67:29: note: Virtual function in base class
bpp-phyl-2.4.0/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:240:21: note: Function in derived class
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTemplateTools.cpp:244:3: style: Exception should be caught by reference. [catchExceptionByValue]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTools.cpp:1212:3: style: Variable 'length' is reassigned a value before the old one has been used. [redundantAssignment]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTools.cpp:1209:0: note: Variable 'length' is reassigned a value before the old one has been used.
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTools.cpp:1212:3: note: Variable 'length' is reassigned a value before the old one has been used.
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTools.cpp:717:3: style: Statements following return, break, continue, goto or throw will never be executed. [unreachableCode]
bpp-phyl-2.4.0/src/Bpp/Phyl/TreeTools.cpp:143:26: style: Reading from empty STL container 'sons' [reademptycontainer]
bpp-phyl-2.4.0/test/test_likelihood.cpp:92:28: style: Variable 'seqNames' is assigned a value that is never used. [unreadVariable]
bpp-phyl-2.4.0/test/test_likelihood.cpp:93:21: style: Variable 'ids' is assigned a value that is never used. [unreadVariable]
bpp-phyl-2.4.0/test/test_likelihood_clock.cpp:100:29: style: Variable 'seqNames' is assigned a value that is never used. [unreadVariable]
bpp-phyl-2.4.0/test/test_likelihood_clock.cpp:101:21: style: Variable 'ids' is assigned a value that is never used. [unreadVariable]
bpp-phyl-2.4.0/test/test_likelihood_nh.cpp:75:28: style: Variable 'seqNames' is assigned a value that is never used. [unreadVariable]
bpp-phyl-2.4.0/test/test_likelihood_nh.cpp:76:21: style: Variable 'ids' is assigned a value that is never used. [unreadVariable]
bpp-phyl-2.4.0/test/test_mapping.cpp:237:26: style: Variable 'c' is assigned a value that is never used. [unreadVariable]
bpp-phyl-2.4.0/test/test_models.cpp:61:5: style: Class 'DummyFunction' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-phyl-2.4.0/test/test_simulations.cpp:59:21: style: Variable 'ids' is assigned a value that is never used. [unreadVariable]
bpp-phyl-2.4.0/test/test_tree.cpp:109:32: style: Variable 'branchPpt' is assigned a value that is never used. [unreadVariable]
bpp-phyl-2.4.0/test/test_tree.cpp:72:0: error: Memory leak: tree2 [memleak]
[09:03]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbpp-phyl-omics/libbpp-phyl-omics_2.4.0.orig.tar.gz
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.h:73:17: style: The function 'getPropertyName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h:91:25: note: Virtual function in base class
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.h:73:17: note: Function in derived class
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.h:74:21: style: The function 'estimateDistanceMatrixForBlock' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h:92:29: note: Virtual function in base class
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.h:74:21: note: Function in derived class
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h:71:54: warning: Member variable 'DistanceBasedPhylogenyReconstructionMafIterator::builder_' is not assigned a value in 'DistanceBasedPhylogenyReconstructionMafIterator::operator='. [operatorEqVarError]
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h:81:17: style: The function 'getPropertyName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/AbstractPhylogenyReconstructionMafIterator.h:76:25: note: Virtual function in base class
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h:81:17: note: Function in derived class
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h:82:11: style: The function 'buildTreeForBlock' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/AbstractPhylogenyReconstructionMafIterator.h:77:19: note: Virtual function in base class
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h:82:11: note: Function in derived class
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.h:106:17: style: The function 'getPropertyName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h:91:25: note: Virtual function in base class
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.h:106:17: note: Function in derived class
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.h:107:21: style: The function 'estimateDistanceMatrixForBlock' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h:92:29: note: Virtual function in base class
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.h:107:21: note: Function in derived class
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:92:10: style: The function 'manipulateTree_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:70:18: note: Virtual function in base class
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:92:10: note: Function in derived class
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:114:10: style: The function 'manipulateTree_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:70:18: note: Virtual function in base class
bpp-phyl-omics-2.4.0/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:114:10: note: Function in derived class
[09:03]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbpp-popgen/libbpp-popgen_2.4.0.orig.tar.gz
bpp-popgen-2.4.0/src/Bpp/PopGen/BasicAlleleInfo.h:69:3: style: Class 'BasicAlleleInfo' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-popgen-2.4.0/src/Bpp/PopGen/GeneralExceptions.h:134:29: style: The function 'getIdentifier' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/GeneralExceptions.h:91:29: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/GeneralExceptions.h:134:29: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/GeneralExceptions.h:174:29: style: The function 'getIdentifier' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/GeneralExceptions.h:91:29: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/GeneralExceptions.h:174:29: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/GeneralExceptions.h:214:29: style: The function 'getIdentifier' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/GeneralExceptions.h:91:29: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/GeneralExceptions.h:214:29: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/GeneralExceptions.h:254:29: style: The function 'getIdentifier' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/GeneralExceptions.h:91:29: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/GeneralExceptions.h:254:29: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/GeneralExceptions.h:294:29: style: The function 'getIdentifier' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/GeneralExceptions.h:91:29: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/GeneralExceptions.h:294:29: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/BasicAlleleInfo.h:110:8: style: The function 'setId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/AlleleInfo.h:70:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/BasicAlleleInfo.h:110:8: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/BasicAlleleInfo.h:111:22: style: The function 'getId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/AlleleInfo.h:75:30: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/BasicAlleleInfo.h:111:22: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/BiAlleleMonolocusGenotype.h:75:3: style: Class 'BiAlleleMonolocusGenotype' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-popgen-2.4.0/src/Bpp/PopGen/BiAlleleMonolocusGenotype.h:119:23: style: The function 'getAlleleIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/MonolocusGenotype.h:81:31: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/BiAlleleMonolocusGenotype.h:119:23: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:135:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:74:3: style: Class 'AnalyzedLoci' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:64:1: warning: The class 'AnalyzedLoci' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/AnalyzedSequences.h:82:3: style: Class 'AnalyzedSequences' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:405:43: style: Function 'addIndividualToGroup' argument 1 names different: declaration 'group_position' definition 'group'. [funcArgNamesDifferent]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.h:255:36: note: Function 'addIndividualToGroup' argument 1 names different: declaration 'group_position' definition 'group'.
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:405:43: note: Function 'addIndividualToGroup' argument 1 names different: declaration 'group_position' definition 'group'.
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:423:48: style: Function 'addEmptyIndividualToGroup' argument 1 names different: declaration 'group_position' definition 'group'. [funcArgNamesDifferent]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.h:263:41: note: Function 'addEmptyIndividualToGroup' argument 1 names different: declaration 'group_position' definition 'group'.
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:423:48: note: Function 'addEmptyIndividualToGroup' argument 1 names different: declaration 'group_position' definition 'group'.
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:1271:100: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:1310:100: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:78:19: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-popgen-2.4.0/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.h:66:3: style: Class 'MonoAlleleMonolocusGenotype' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-popgen-2.4.0/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.h:71:3: style: Class 'MonoAlleleMonolocusGenotype' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotype.h:77:3: style: Class 'MultilocusGenotype' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Individual.h:96:3: style: Class 'Individual' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Group.h:82:3: style: Class 'Group' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainer.h:115:3: style: Class 'PolymorphismSequenceContainer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainer.h:132:3: style: Class 'PolymorphismSequenceContainer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainer.h:150:3: style: Class 'PolymorphismSequenceContainer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-popgen-2.4.0/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.h:100:23: style: The function 'getAlleleIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/MonolocusGenotype.h:81:31: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.h:100:23: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:1280:7: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:1293:9: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:1320:7: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:1332:9: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:456:3: style: Exception should be caught by reference. [catchExceptionByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:472:3: style: Exception should be caught by reference. [catchExceptionByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:488:3: style: Exception should be caught by reference. [catchExceptionByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:504:3: style: Exception should be caught by reference. [catchExceptionByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:520:3: style: Exception should be caught by reference. [catchExceptionByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/MonolocusGenotypeTools.h:75:105: performance: Function parameter 'allele_keys' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Individual.h:425:31: performance: Function parameter 'allele_keys' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Individual.h:436:36: performance: Function parameter 'allele_id' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:945:164: performance: Function parameter 'allele_keys' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.cpp:973:168: performance: Function parameter 'allele_id' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Locality.h:73:0: performance: Function parameter 'name' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Locality.h:83:0: performance: Function parameter 'name' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSetTools.cpp:68:73: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSetTools.cpp:58:7: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSetTools.cpp:84:9: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.h:506:157: performance: Function parameter 'allele_keys' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/DataSet.h:517:161: performance: Function parameter 'allele_id' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Group.cpp:78:15: warning: Member variable 'Group::name_' is not assigned a value in 'Group::operator='. [operatorEqVarError]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Individual.cpp:547:99: performance: Function parameter 'allele_keys' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Individual.cpp:567:103: performance: Function parameter 'allele_id' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:67:16: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/IDataSet.h:65:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:67:16: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:69:16: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/IDataSet.h:70:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:69:16: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:71:20: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/IDataSet.h:75:20: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:71:20: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:73:20: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/IDataSet.h:80:20: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:73:20: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:64:16: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/ODataSet.h:65:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:64:16: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:65:16: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/ODataSet.h:70:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:65:16: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:71:8: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:64:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:71:8: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:72:8: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:65:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:72:8: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:66:3: style: Class 'DarwinVarSingle' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:74:8: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:64:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:74:8: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:75:8: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:65:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:75:8: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:149:124: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:152:77: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.h:73:3: style: Class 'MultiAlleleMonolocusGenotype' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:179:5: style: Class 'Record' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.h:107:23: style: The function 'getAlleleIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/MonolocusGenotype.h:81:31: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.h:107:23: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:99:8: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:67:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:99:8: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:100:8: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:69:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:100:8: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:101:12: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:71:20: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:101:12: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:102:12: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:73:20: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:102:12: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:84:5: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:132:79: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:72:8: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:67:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:72:8: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:73:8: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:69:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:73:8: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:74:12: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:71:20: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:74:12: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:75:12: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:73:20: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:75:12: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:73:8: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:67:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:73:8: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:74:8: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:69:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:74:8: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:75:12: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:71:20: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:75:12: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:76:12: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:73:20: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:76:12: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:151:8: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:67:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:151:8: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:152:8: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:69:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:152:8: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:153:12: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:71:20: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:153:12: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:154:12: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:73:20: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:154:12: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:163:8: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:64:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:163:8: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:165:8: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:65:16: note: Virtual function in base class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:165:8: note: Function in derived class
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:70:5: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:433:57: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:98:3: style: Class 'MultiSeqIndividual' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:477:3: warning: Possible leak in public function. The pointer 'genotype_' is not deallocated before it is allocated. [publicAllocationError]
bpp-popgen-2.4.0/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:173:50: performance: Function parameter 'id' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/LocusInfo.h:63:1: warning: The class 'LocusInfo' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MonolocusGenotypeTools.cpp:50:120: performance: Function parameter 'allele_keys' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotype.h:65:1: warning: The class 'MultilocusGenotype' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:735:188: style: Function 'getDistanceMatrix' argument 4 names different: declaration 'distance_method' definition 'distance_methode'. [funcArgNamesDifferent]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:289:182: note: Function 'getDistanceMatrix' argument 4 names different: declaration 'distance_method' definition 'distance_methode'.
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:735:188: note: Function 'getDistanceMatrix' argument 4 names different: declaration 'distance_method' definition 'distance_methode'.
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:135:89: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:244:73: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:267:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:290:87: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:419:102: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:445:110: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:461:110: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:475:110: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:502:79: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:514:73: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:518:73: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:530:75: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:534:75: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:539:79: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:550:73: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:556:71: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:567:110: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:584:81: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:594:114: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:615:81: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:625:114: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:715:114: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:739:69: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:344:7: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:392:7: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:637:155: performance: Function parameter 'locus_positions' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:667:155: performance: Function parameter 'locus_positions' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:735:188: performance: Function parameter 'distance_methode' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:61:73: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:87:73: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:205:63: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:264:77: performance: Function parameter 'name' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:276:77: performance: Function parameter 'name' should be passed by const reference. [passedByValue]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:115:73: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:134:75: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:185:73: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:251:73: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:270:75: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:336:73: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:351:75: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:369:73: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:259:5: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:276:5: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:460:5: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:512:5: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:238:34: style: The scope of the variable 'npsc' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:268:34: style: The scope of the variable 'npsc' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:71:83: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:578:83: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:65:5: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:84:9: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:95:11: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:250:7: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:280:7: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:450:5: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:654:3: style: Variable 'ThetaW' is reassigned a value before the old one has been used. [redundantAssignment]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:650:0: note: Variable 'ThetaW' is reassigned a value before the old one has been used.
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:654:3: note: Variable 'ThetaW' is reassigned a value before the old one has been used.
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:75:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:96:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:122:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:142:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:159:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:179:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:195:15: style: The scope of the variable 'site_in' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:196:15: style: The scope of the variable 'site_out' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:217:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:234:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:263:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:315:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:490:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:520:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:552:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:601:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:624:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:638:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:672:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:686:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:700:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:715:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:730:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:744:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:758:15: style: The scope of the variable 'siteIn' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:759:15: style: The scope of the variable 'siteOut' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:760:15: style: The scope of the variable 'siteCons' can be reduced. [variableScope]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:334:78: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:344:78: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:378:78: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:392:78: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:421:82: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:562:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:1031:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:1519:88: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:1534:88: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:1552:90: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.h:737:10: performance: Technically the member function 'bpp::SequenceStatistics::fstHudson92' can be static. [functionStatic]
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.cpp:954:28: note: Technically the member function 'bpp::SequenceStatistics::fstHudson92' can be static.
bpp-popgen-2.4.0/src/Bpp/PopGen/SequenceStatistics.h:737:10: note: Technically the member function 'bpp::SequenceStatistics::fstHudson92' can be static.
[09:03]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbpp-qt/libbpp-qt_2.4.0.orig.tar.gz
bpp-qt-2.4.0/src/Bpp/Qt/QtOutputStream.h:82:3: warning: Member variable 'QtOutputStream::maxNbLines_' is not initialized in the constructor. [uninitMemberVarPrivate]
bpp-qt-2.4.0/src/Bpp/Qt/QtOutputStream.h:82:3: warning: Member variable 'QtOutputStream::buffer' is not initialized in the constructor. [uninitMemberVarPrivate]
bpp-qt-2.4.0/src/Bpp/Qt/QtOutputStream.h:83:19: warning: Member variable 'QtOutputStream::maxNbLines_' is not assigned a value in 'QtOutputStream::operator='. [operatorEqVarError]
bpp-qt-2.4.0/src/Bpp/Qt/QtOutputStream.h:83:19: warning: Member variable 'QtOutputStream::buffer' is not assigned a value in 'QtOutputStream::operator='. [operatorEqVarError]
bpp-qt-2.4.0/src/Bpp/Qt/QtOutputStream.h:74:3: style: Class 'QtOutputStream' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-qt-2.4.0/src/Bpp/Qt/Tree/TreeCanvas.h:120:17: warning: Member variable 'TreeCanvas::currentTree_' is not assigned a value in 'TreeCanvas::operator='. [operatorEqVarError]
bpp-qt-2.4.0/src/Bpp/Qt/Tree/TreeCanvas.h:120:17: warning: Member variable 'TreeCanvas::treeDrawing_' is not assigned a value in 'TreeCanvas::operator='. [operatorEqVarError]
bpp-qt-2.4.0/src/Bpp/Qt/Tree/TreeCanvas.h:120:17: warning: Member variable 'TreeCanvas::defaultTreeDrawing_' is not assigned a value in 'TreeCanvas::operator='. [operatorEqVarError]
bpp-qt-2.4.0/src/Bpp/Qt/Tree/TreeCanvas.h:120:17: warning: Member variable 'TreeCanvas::drawingWidth_' is not assigned a value in 'TreeCanvas::operator='. [operatorEqVarError]
bpp-qt-2.4.0/src/Bpp/Qt/Tree/TreeCanvas.h:120:17: warning: Member variable 'TreeCanvas::drawingHeight_' is not assigned a value in 'TreeCanvas::operator='. [operatorEqVarError]
bpp-qt-2.4.0/src/Bpp/Qt/Tree/TreeCanvas.h:120:17: warning: Member variable 'TreeCanvas::nodeCollapsed_' is not assigned a value in 'TreeCanvas::operator='. [operatorEqVarError]
bpp-qt-2.4.0/src/Bpp/Qt/Tree/TreeCanvas.h:112:5: style: Class 'TreeCanvas' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-qt-2.4.0/src/Bpp/Qt/MouseListener.h:80:10: style: The function 'mouseDoubleClickEvent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-qt-2.4.0/src/Bpp/Qt/MouseListener.h:65:18: note: Virtual function in base class
bpp-qt-2.4.0/src/Bpp/Qt/MouseListener.h:80:10: note: Function in derived class
bpp-qt-2.4.0/src/Bpp/Qt/MouseListener.h:81:10: style: The function 'mouseMoveEvent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-qt-2.4.0/src/Bpp/Qt/MouseListener.h:66:18: note: Virtual function in base class
bpp-qt-2.4.0/src/Bpp/Qt/MouseListener.h:81:10: note: Function in derived class
bpp-qt-2.4.0/src/Bpp/Qt/MouseListener.h:82:10: style: The function 'mousePressEvent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-qt-2.4.0/src/Bpp/Qt/MouseListener.h:67:18: note: Virtual function in base class
bpp-qt-2.4.0/src/Bpp/Qt/MouseListener.h:82:10: note: Function in derived class
bpp-qt-2.4.0/src/Bpp/Qt/MouseListener.h:83:10: style: The function 'mouseReleaseEvent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-qt-2.4.0/src/Bpp/Qt/MouseListener.h:68:18: note: Virtual function in base class
bpp-qt-2.4.0/src/Bpp/Qt/MouseListener.h:83:10: note: Function in derived class
bpp-qt-2.4.0/src/Bpp/Qt/Tree/TreeCanvasControlers.h:70:3: style: Class 'NodeClickableAreasTreeDrawingListener' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-qt-2.4.0/src/Bpp/Qt/Tree/TreeCanvasControlers.h:137:5: style: Class 'TreeCanvasControlers' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-qt-2.4.0/src/Bpp/Qt/Tree/TreeStatisticsBox.h:72:5: style: Class 'TreeStatisticsBox' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
[09:03]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbpp-raa/libbpp-raa_2.4.0.orig.tar.gz
bpp-raa-2.4.0/src/Bpp/Raa/RAA.cpp:341:12: warning: Either the condition 'p' is redundant or there is pointer arithmetic with NULL pointer. [nullPointerArithmeticRedundantCheck]
bpp-raa-2.4.0/src/Bpp/Raa/RAA.cpp:339:7: note: Assuming that condition 'p' is not redundant
bpp-raa-2.4.0/src/Bpp/Raa/RAA.cpp:341:12: note: Null pointer addition
bpp-raa-2.4.0/src/Bpp/Raa/RAA.cpp:347:12: error: Pointer addition with NULL pointer. [nullPointerArithmetic]
bpp-raa-2.4.0/src/Bpp/Raa/RAA.cpp:335:29: note: Assignment 'q=0', assigned value is 0
bpp-raa-2.4.0/src/Bpp/Raa/RAA.cpp:347:12: note: Null pointer addition
bpp-raa-2.4.0/src/Bpp/Raa/RAA.cpp:586:37: style: Function 'getNextFeature' argument 1 names different: declaration 'opaque' definition 'v'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/RAA.h:420:34: note: Function 'getNextFeature' argument 1 names different: declaration 'opaque' definition 'v'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA.cpp:586:37: note: Function 'getNextFeature' argument 1 names different: declaration 'opaque' definition 'v'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA.cpp:627:40: style: Function 'interruptGetAnyFeature' argument 1 names different: declaration 'opaque' definition 'v'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/RAA.h:428:37: note: Function 'interruptGetAnyFeature' argument 1 names different: declaration 'opaque' definition 'v'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA.cpp:627:40: note: Function 'interruptGetAnyFeature' argument 1 names different: declaration 'opaque' definition 'v'.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:21:1: style: The class 'RaaSpeciesTree' does not have a constructor although it has private member variables. [noConstructor]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSeqAttributes.h:14:1: style: The class 'RaaSeqAttributes' does not have a constructor although it has private member variables. [noConstructor]
bpp-raa-2.4.0/src/Bpp/Raa/RAA.h:42:1: style: The class 'RaaAddress' does not have a constructor although it has private member variables. [noConstructor]
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.h:69:15: style: Technically the member function 'bpp::RaaList::elementName' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.h:74:7: style: Technically the member function 'bpp::RaaList::elementLength' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.h:106:7: style: Technically the member function 'bpp::RaaList::getRank' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.h:118:15: style: Technically the member function 'bpp::RaaList::getType' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.h:123:15: style: Technically the member function 'bpp::RaaList::getName' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSeqAttributes.h:22:15: style: Technically the member function 'bpp::RaaSeqAttributes::getName' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSeqAttributes.h:27:7: style: Technically the member function 'bpp::RaaSeqAttributes::getLength' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSeqAttributes.h:32:7: style: Technically the member function 'bpp::RaaSeqAttributes::getRank' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSeqAttributes.h:40:7: style: Technically the member function 'bpp::RaaSeqAttributes::getGeneticCode' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSeqAttributes.h:45:7: style: Technically the member function 'bpp::RaaSeqAttributes::getReadingFrame' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSeqAttributes.h:50:15: style: Technically the member function 'bpp::RaaSeqAttributes::getSpeciesName' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSeqAttributes.h:55:15: style: Technically the member function 'bpp::RaaSeqAttributes::getAccessionNumber' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSeqAttributes.h:60:15: style: Technically the member function 'bpp::RaaSeqAttributes::getDescription' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RAA.h:52:7: style: Technically the member function 'bpp::RaaAddress::getDiv' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RAA.h:56:12: style: Technically the member function 'bpp::RaaAddress::getAddr' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RAA.h:253:14: style: Technically the member function 'bpp::RAA::getCurrentAnnotAddress' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RAA.cpp:229:17: note: Technically the member function 'bpp::RAA::getCurrentAnnotAddress' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RAA.h:253:14: note: Technically the member function 'bpp::RAA::getCurrentAnnotAddress' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RAA.cpp:269:5: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-raa-2.4.0/src/Bpp/Raa/RAA.cpp:292:5: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-raa-2.4.0/src/Bpp/Raa/RAA.cpp:265:3: style: Exception should be caught by reference. [catchExceptionByValue]
bpp-raa-2.4.0/src/Bpp/Raa/RAA.cpp:290:3: style: Exception should be caught by reference. [catchExceptionByValue]
bpp-raa-2.4.0/src/Bpp/Raa/RAA.cpp:520:3: style: Exception should be caught by reference. [catchExceptionByValue]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1079:3: warning: %llu in format string (no. 1) requires 'unsigned long long *' but the argument type is 'signed long long *'. [invalidScanfArgType_int]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1086:3: warning: %llu in format string (no. 1) requires 'unsigned long long' but the argument type is 'signed long long'. [invalidPrintfArgType_uint]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1220:3: warning: %u in format string (no. 1) requires 'unsigned int *' but the argument type is 'signed int *'. [invalidScanfArgType_int]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1242:3: warning: %u in format string (no. 1) requires 'unsigned int *' but the argument type is 'signed int *'. [invalidScanfArgType_int]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1612:3: warning: %u in format string (no. 1) requires 'unsigned int *' but the argument type is 'signed int *'. [invalidScanfArgType_int]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1662:3: warning: %u in format string (no. 1) requires 'unsigned int *' but the argument type is 'signed int *'. [invalidScanfArgType_int]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:190:13: warning: Either the condition 'raa_current_db!=NULL' is redundant or there is possible null pointer dereference: raa_current_db. [nullPointerRedundantCheck]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:198:26: note: Assuming that condition 'raa_current_db!=NULL' is not redundant
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:190:13: note: Null pointer dereference
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:194:10: warning: Either the condition 'raa_current_db!=NULL' is redundant or there is possible null pointer dereference: raa_current_db. [nullPointerRedundantCheck]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:198:26: note: Assuming that condition 'raa_current_db!=NULL' is not redundant
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:194:10: note: Null pointer dereference
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:196:7: warning: Either the condition 'raa_current_db!=NULL' is redundant or there is possible null pointer dereference: raa_current_db. [nullPointerRedundantCheck]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:198:26: note: Assuming that condition 'raa_current_db!=NULL' is not redundant
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:196:7: note: Null pointer dereference
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:197:8: warning: Either the condition 'raa_current_db!=NULL' is redundant or there is possible null pointer dereference: raa_current_db. [nullPointerRedundantCheck]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:198:26: note: Assuming that condition 'raa_current_db!=NULL' is not redundant
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:197:8: note: Null pointer dereference
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:202:14: warning: Either the condition 'raa_current_db!=NULL' is redundant or there is possible null pointer dereference: raa_current_db. [nullPointerRedundantCheck]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:198:26: note: Assuming that condition 'raa_current_db!=NULL' is not redundant
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:202:14: note: Null pointer dereference
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:232:16: style: The scope of the variable 'l2' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:233:9: style: The scope of the variable 'p' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:436:33: style: The scope of the variable 'challenge' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:437:34: style: The scope of the variable 'i' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:651:11: style: The scope of the variable 'l' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:681:11: style: The scope of the variable 'piece' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:843:15: style: The scope of the variable 'i' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:912:28: style: The scope of the variable 'numlistchr' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:912:42: style: The scope of the variable 'countchr' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:912:54: style: The scope of the variable 'locuschr' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:912:66: style: The scope of the variable 'typechr' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:994:9: style: The scope of the variable 'p' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:995:12: style: The scope of the variable 'rep' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1097:27: style: The scope of the variable 'q' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1145:7: style: The scope of the variable 'i' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1146:12: style: The scope of the variable 'debut' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1250:28: style: The scope of the variable 'countstr' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1342:28: style: The scope of the variable 'countstr' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1342:40: style: The scope of the variable 'locusstr' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1342:52: style: The scope of the variable 'typestr' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1419:28: style: The scope of the variable 'rankstr' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1672:12: style: The scope of the variable 'rep' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1673:9: style: The scope of the variable 'p' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1673:14: style: The scope of the variable 'reponse' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1674:7: style: The scope of the variable 'code' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1674:13: style: The scope of the variable 'l' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:2021:28: style: The scope of the variable 'recnum' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:2326:12: style: The scope of the variable 'retval' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:2351:11: style: The scope of the variable 'l' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:2408:7: style: The scope of the variable 'i' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:2834:20: style: The scope of the variable 'p' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:2834:30: style: The scope of the variable 'r' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:2835:7: style: The scope of the variable 'l' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:2896:10: style: The scope of the variable 'deb' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:2977:22: style: The scope of the variable 'q' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:3141:16: style: The scope of the variable 'i' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:3195:35: style: The scope of the variable 'val' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:3382:19: style: The scope of the variable 'maxtid' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:145:59: style: Function 'sock_fputs' argument 2 names different: declaration 'line' definition 's'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.h:258:59: note: Function 'sock_fputs' argument 2 names different: declaration 'line' definition 's'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:145:59: note: Function 'sock_fputs' argument 2 names different: declaration 'line' definition 's'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:319:118: style: Function 'raa_acnucopen_alt' argument 5 names different: declaration 'psock' definition 'p'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.h:181:125: note: Function 'raa_acnucopen_alt' argument 5 names different: declaration 'psock' definition 'p'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:319:118: note: Function 'raa_acnucopen_alt' argument 5 names different: declaration 'psock' definition 'p'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:909:57: style: Function 'raa_proc_query' argument 2 names different: declaration 'query' definition 'requete'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.h:188:64: note: Function 'raa_proc_query' argument 2 names different: declaration 'query' definition 'requete'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:909:57: note: Function 'raa_proc_query' argument 2 names different: declaration 'query' definition 'requete'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1176:64: style: Function 'raa_next_annots' argument 2 names different: declaration 'faddr' definition 'paddr'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.h:197:64: note: Function 'raa_next_annots' argument 2 names different: declaration 'faddr' definition 'paddr'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1176:64: note: Function 'raa_next_annots' argument 2 names different: declaration 'faddr' definition 'paddr'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1874:92: style: Function 'raa_readspec' argument 5 names different: declaration 'desc' definition 'pdesc'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.h:225:92: note: Function 'raa_readspec' argument 5 names different: declaration 'desc' definition 'pdesc'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1874:92: note: Function 'raa_readspec' argument 5 names different: declaration 'desc' definition 'pdesc'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1874:104: style: Function 'raa_readspec' argument 6 names different: declaration 'syno' definition 'psyno'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.h:225:103: note: Function 'raa_readspec' argument 6 names different: declaration 'syno' definition 'psyno'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1874:104: note: Function 'raa_readspec' argument 6 names different: declaration 'syno' definition 'psyno'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1948:91: style: Function 'raa_readkey' argument 5 names different: declaration 'desc' definition 'pdesc'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.h:226:91: note: Function 'raa_readkey' argument 5 names different: declaration 'desc' definition 'pdesc'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1948:91: note: Function 'raa_readkey' argument 5 names different: declaration 'desc' definition 'pdesc'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1948:103: style: Function 'raa_readkey' argument 6 names different: declaration 'syno' definition 'psyno'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.h:226:102: note: Function 'raa_readkey' argument 6 names different: declaration 'syno' definition 'psyno'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:1948:103: note: Function 'raa_readkey' argument 6 names different: declaration 'syno' definition 'psyno'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:2266:75: style: Function 'raa_readshrt' argument 3 names different: declaration 'val' definition 'pval'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.h:231:75: note: Function 'raa_readshrt' argument 3 names different: declaration 'val' definition 'pval'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:2266:75: note: Function 'raa_readshrt' argument 3 names different: declaration 'val' definition 'pval'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:2775:96: style: Function 'raa_modifylist' argument 5 names different: declaration 'pnewlrank' definition 'pnewlist'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.h:237:25: note: Function 'raa_modifylist' argument 5 names different: declaration 'pnewlrank' definition 'pnewlist'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:2775:96: note: Function 'raa_modifylist' argument 5 names different: declaration 'pnewlrank' definition 'pnewlist'.
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:627:5: error: Memory leak: ip_name [memleak]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:644:3: error: Memory leak: ip_name [memleak]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:2854:0: error: Memory leak: names [memleak]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:2854:0: error: Memory leak: descriptions [memleak]
bpp-raa-2.4.0/src/Bpp/Raa/RAA_acnuc.c:3113:0: error: Memory leak: table [memleak]
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.cpp:57:30: style: Function 'addElement' argument 1 names different: declaration 'rank' definition 'elt_rank'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.h:86:23: note: Function 'addElement' argument 1 names different: declaration 'rank' definition 'elt_rank'.
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.cpp:57:30: note: Function 'addElement' argument 1 names different: declaration 'rank' definition 'elt_rank'.
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.cpp:73:33: style: Function 'removeElement' argument 1 names different: declaration 'rank' definition 'elt_rank'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.h:91:26: note: Function 'removeElement' argument 1 names different: declaration 'rank' definition 'elt_rank'.
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.cpp:73:33: note: Function 'removeElement' argument 1 names different: declaration 'rank' definition 'elt_rank'.
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.cpp:85:28: style: Function 'isInList' argument 1 names different: declaration 'rank' definition 'elt_rank'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.h:96:21: note: Function 'isInList' argument 1 names different: declaration 'rank' definition 'elt_rank'.
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.cpp:85:28: note: Function 'isInList' argument 1 names different: declaration 'rank' definition 'elt_rank'.
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.cpp:6:10: warning: Member variable 'RaaList::rank' is not initialized in the constructor. [uninitMemberVarPrivate]
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.cpp:6:10: warning: Member variable 'RaaList::type' is not initialized in the constructor. [uninitMemberVarPrivate]
bpp-raa-2.4.0/src/Bpp/Raa/RaaList.cpp:6:10: warning: Member variable 'RaaList::elementlength' is not initialized in the constructor. [uninitMemberVarPrivate]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.cpp:95:35: style: Function 'nextChild' argument 1 names different: declaration 'parent' definition 'rank'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:101:21: note: Function 'nextChild' argument 1 names different: declaration 'parent' definition 'rank'.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.cpp:95:35: note: Function 'nextChild' argument 1 names different: declaration 'parent' definition 'rank'.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:42:7: style: Technically the member function 'bpp::RaaSpeciesTree::findNode' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.cpp:40:21: note: Technically the member function 'bpp::RaaSpeciesTree::findNode' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:42:7: note: Technically the member function 'bpp::RaaSpeciesTree::findNode' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:58:7: style: Technically the member function 'bpp::RaaSpeciesTree::parent' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.cpp:21:21: note: Technically the member function 'bpp::RaaSpeciesTree::parent' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:58:7: note: Technically the member function 'bpp::RaaSpeciesTree::parent' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:66:7: style: Technically the member function 'bpp::RaaSpeciesTree::getTid' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.cpp:31:21: note: Technically the member function 'bpp::RaaSpeciesTree::getTid' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:66:7: note: Technically the member function 'bpp::RaaSpeciesTree::getTid' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:74:7: style: Technically the member function 'bpp::RaaSpeciesTree::count' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.cpp:61:21: note: Technically the member function 'bpp::RaaSpeciesTree::count' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:74:7: note: Technically the member function 'bpp::RaaSpeciesTree::count' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:84:15: style: Technically the member function 'bpp::RaaSpeciesTree::label' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.cpp:70:24: note: Technically the member function 'bpp::RaaSpeciesTree::label' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:84:15: note: Technically the member function 'bpp::RaaSpeciesTree::label' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:92:7: style: Technically the member function 'bpp::RaaSpeciesTree::firstChild' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.cpp:86:21: note: Technically the member function 'bpp::RaaSpeciesTree::firstChild' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:92:7: note: Technically the member function 'bpp::RaaSpeciesTree::firstChild' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:101:7: style: Technically the member function 'bpp::RaaSpeciesTree::nextChild' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.cpp:95:21: note: Technically the member function 'bpp::RaaSpeciesTree::nextChild' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:101:7: note: Technically the member function 'bpp::RaaSpeciesTree::nextChild' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:121:7: style: Technically the member function 'bpp::RaaSpeciesTree::nextSynonym' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.cpp:121:21: note: Technically the member function 'bpp::RaaSpeciesTree::nextSynonym' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:121:7: note: Technically the member function 'bpp::RaaSpeciesTree::nextSynonym' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:129:7: style: Technically the member function 'bpp::RaaSpeciesTree::getMajor' can be const. [functionConst]
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.cpp:133:21: note: Technically the member function 'bpp::RaaSpeciesTree::getMajor' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/RaaSpeciesTree.h:129:7: note: Technically the member function 'bpp::RaaSpeciesTree::getMajor' can be const.
bpp-raa-2.4.0/src/Bpp/Raa/md5.c:58:10: style: The scope of the variable 't' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/misc_acnuc.c:347:9: style: The scope of the variable 'p' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/misc_acnuc.c:461:14: style: The scope of the variable 'q' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/misc_acnuc.c:532:8: style: The scope of the variable 'compl1' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/misc_acnuc.c:532:16: style: The scope of the variable 'compl2' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/misc_acnuc.c:679:15: style: The scope of the variable 'newacnuc' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/misc_acnuc.c:679:30: style: The scope of the variable 'newgcgacnuc' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/misc_acnuc.c:709:12: style: The scope of the variable 'c' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/misc_acnuc.c:481:20: style: Function 'mycalloc' argument 1 names different: declaration 'nbr' definition 'nbre'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/misc_acnuc.c:24:20: note: Function 'mycalloc' argument 1 names different: declaration 'nbr' definition 'nbre'.
bpp-raa-2.4.0/src/Bpp/Raa/misc_acnuc.c:481:20: note: Function 'mycalloc' argument 1 names different: declaration 'nbr' definition 'nbre'.
bpp-raa-2.4.0/src/Bpp/Raa/misc_acnuc.c:481:33: style: Function 'mycalloc' argument 2 names different: declaration 'taille' definition 'size'. [funcArgNamesDifferent]
bpp-raa-2.4.0/src/Bpp/Raa/misc_acnuc.c:24:32: note: Function 'mycalloc' argument 2 names different: declaration 'taille' definition 'size'.
bpp-raa-2.4.0/src/Bpp/Raa/misc_acnuc.c:481:33: note: Function 'mycalloc' argument 2 names different: declaration 'taille' definition 'size'.
bpp-raa-2.4.0/src/Bpp/Raa/misc_acnuc.c:748:9: warning: Storing getchar() return value in char variable and then comparing with EOF. [checkCastIntToCharAndBack]
bpp-raa-2.4.0/src/Bpp/Raa/parser.c:86:26: style: The scope of the variable 'debut' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/parser.c:86:35: style: The scope of the variable 'p' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/zsockr.c:64:7: style: The scope of the variable 'q' can be reduced. [variableScope]
bpp-raa-2.4.0/src/Bpp/Raa/zsockr.c:110:7: style: The scope of the variable 'c' can be reduced. [variableScope]
[09:03]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbpp-seq/libbpp-seq_2.4.0.orig.tar.gz
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp:102:59: style: Function 'getStateIndex' argument 1 names different: declaration 'state' definition 'letter'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:225:45: note: Function 'getStateIndex' argument 1 names different: declaration 'state' definition 'letter'.
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp:102:59: note: Function 'getStateIndex' argument 1 names different: declaration 'state' definition 'letter'.
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp:120:44: style: Function 'getStateIndex' argument 1 names different: declaration 'state' definition 'num'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:223:30: note: Function 'getStateIndex' argument 1 names different: declaration 'state' definition 'num'.
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp:120:44: note: Function 'getStateIndex' argument 1 names different: declaration 'state' definition 'num'.
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp:147:52: style: Function 'getStateAt' argument 1 names different: declaration 'stateIndex' definition 'pos'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:176:46: note: Function 'getStateAt' argument 1 names different: declaration 'stateIndex' definition 'pos'.
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp:147:52: note: Function 'getStateAt' argument 1 names different: declaration 'stateIndex' definition 'pos'.
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:143:12: style: The function 'getNumberOfStates' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:292:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:143:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:144:18: style: The function 'getNumberOfChars' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:300:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:144:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:145:17: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:169:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:145:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:146:17: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:157:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:146:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:147:9: style: The function 'charToInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:277:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:147:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:148:17: style: The function 'intToChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:268:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:148:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:149:10: style: The function 'isIntInAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:206:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:149:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:150:10: style: The function 'isCharInAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:215:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:150:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:151:22: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:335:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:151:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:152:30: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:346:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:152:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:153:9: style: The function 'getGeneric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:358:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:153:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:154:17: style: The function 'getGeneric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:371:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:154:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:155:29: style: The function 'getSupportedInts' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:380:37: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:155:29: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:156:37: style: The function 'getSupportedChars' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:389:45: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:156:37: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:157:38: style: The function 'getResolvedChars' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:398:46: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:157:38: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:158:9: style: The function 'getGapCharacterCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:408:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:158:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:159:10: style: The function 'isGap' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:414:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:159:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:160:10: style: The function 'isGap' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:420:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:160:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:187:34: style: The function 'getStateAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:231:34: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:187:34: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:198:26: style: The function 'getState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:251:34: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:198:26: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:211:26: style: The function 'getState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:242:34: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:211:26: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:215:9: style: The function 'getIntCodeAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:175:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:215:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:219:24: style: The function 'getCharCodeAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:181:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:219:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:223:12: style: The function 'getStateIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:186:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:223:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:225:12: style: The function 'getStateIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:191:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:225:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:265:18: style: The function 'getStateCodingSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:452:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:265:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:267:10: style: The function 'equals' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:459:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:267:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DNA.h:68:5: style: Class 'DNA' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNA.h:66:5: style: Class 'RNA' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:279:5: style: Class 'BasicSymbolList' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:304:5: style: Class 'BasicSymbolList' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:380:5: style: Class 'SymbolListEditionEvent' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:514:5: style: Class 'EdSymbolList' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:539:5: style: Class 'EdSymbolList' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:182:5: style: Class 'BasicSequence' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:261:5: style: Class 'BasicSequence' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:202:5: style: Class 'WordAlphabet' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:77:5: style: Class 'CodonAlphabet' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:71:3: style: Class 'RNY' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h:80:29: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:129:31: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h:80:29: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h:88:10: style: The function 'isCharInAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:215:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h:88:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h:91:9: style: The function 'charToInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:277:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h:91:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h:98:10: style: The function 'registerState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:235:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h:98:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h:108:10: style: The function 'setState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:245:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h:108:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:83:30: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h:80:29: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:83:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:92:10: style: The function 'registerState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:235:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:92:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:100:10: style: The function 'setState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:245:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:100:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:259:18: style: The function 'getSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:316:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:259:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:262:18: style: The function 'getNumberOfTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:308:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:262:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:264:9: style: The function 'getUnknownCharacterCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:403:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:264:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:266:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:426:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:266:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:267:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:432:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:267:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DNA.h:78:10: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:83:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DNA.h:78:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DNA.h:86:22: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:335:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DNA.h:86:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DNA.h:87:30: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:346:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DNA.h:87:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DNA.h:88:9: style: The function 'getGeneric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:358:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DNA.h:88:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DNA.h:89:17: style: The function 'getGeneric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:371:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DNA.h:89:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DNA.h:90:17: style: The function 'getAlphabetType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:445:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DNA.h:90:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNA.h:76:10: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:83:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNA.h:76:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNA.h:84:22: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:335:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNA.h:84:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNA.h:85:30: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:346:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNA.h:85:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNA.h:86:9: style: The function 'getGeneric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:358:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNA.h:86:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNA.h:87:17: style: The function 'getGeneric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:371:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNA.h:87:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNA.h:88:17: style: The function 'getAlphabetType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:445:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNA.h:88:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:109:22: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h:80:29: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:109:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:119:18: style: The function 'getSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:316:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:119:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:120:18: style: The function 'getNumberOfTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:308:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:120:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:121:9: style: The function 'getUnknownCharacterCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:403:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:121:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:122:22: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:335:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:122:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:123:30: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:346:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:123:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:124:9: style: The function 'getGeneric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:358:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:124:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:125:17: style: The function 'getGeneric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:371:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:125:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:126:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:426:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:126:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:127:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:432:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:127:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:128:17: style: The function 'getAlphabetType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:445:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.h:128:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h:58:10: style: The function 'registerState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:235:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h:58:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h:76:22: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h:80:29: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h:76:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h:87:18: style: The function 'getSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:316:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h:87:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h:88:18: style: The function 'getNumberOfTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:308:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h:88:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h:89:17: style: The function 'getAlphabetType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:445:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h:89:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h:90:9: style: The function 'getUnknownCharacterCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:403:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h:90:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h:91:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:426:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h:91:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h:92:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:432:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/DefaultAlphabet.h:92:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:334:29: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:84:29: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:334:29: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:336:20: style: The function 'size' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:91:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:336:20: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:338:18: style: The function 'setContent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:105:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:338:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:340:18: style: The function 'setContent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:113:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:340:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:342:25: style: The function 'toString' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:124:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:342:25: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:344:18: style: The function 'addElement' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:137:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:344:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:346:18: style: The function 'addElement' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:145:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:346:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:348:18: style: The function 'setElement' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:153:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:348:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:350:18: style: The function 'deleteElement' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:160:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:350:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:352:18: style: The function 'deleteElements' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:168:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:352:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:354:25: style: The function 'getChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:176:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:354:25: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:356:18: style: The function 'addElement' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:183:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:356:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:358:18: style: The function 'addElement' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:191:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:358:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:360:18: style: The function 'setElement' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:199:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:360:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:362:17: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:206:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:362:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:364:24: style: The function 'operator[]' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:226:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:364:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:366:18: style: The function 'operator[]' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:233:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:366:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:368:18: style: The function 'shuffle' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:238:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:368:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:576:29: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:84:29: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:576:29: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:578:20: style: The function 'size' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:91:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:578:20: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:582:18: style: The function 'setContent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:105:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:582:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:584:18: style: The function 'setContent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:113:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:584:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:586:25: style: The function 'toString' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:124:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:586:25: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:588:18: style: The function 'addElement' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:137:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:588:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:590:18: style: The function 'addElement' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:145:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:590:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:592:18: style: The function 'setElement' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:153:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:592:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:594:18: style: The function 'deleteElement' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:160:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:594:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:596:18: style: The function 'deleteElements' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:168:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:596:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:598:25: style: The function 'getChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:176:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:598:25: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:600:18: style: The function 'addElement' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:183:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:600:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:602:18: style: The function 'addElement' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:191:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:602:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:604:18: style: The function 'setElement' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:199:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:604:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:606:17: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:206:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:606:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:608:24: style: The function 'operator[]' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:226:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:608:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:610:18: style: The function 'operator[]' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:233:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:610:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:612:18: style: The function 'shuffle' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:238:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:612:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:234:24: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:93:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:234:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:236:10: style: The function 'setName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:100:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:236:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:246:21: style: The function 'getComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:114:29: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:246:21: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:248:10: style: The function 'setComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:121:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:248:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:93:18: style: The function 'setContent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:105:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:93:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:94:18: style: The function 'setContent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:113:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:94:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:104:18: style: The function 'setToSizeR' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:139:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:104:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:114:18: style: The function 'setToSizeL' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:149:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:114:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:291:20: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:224:36: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:291:20: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:300:10: style: The function 'setContent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:92:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:300:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:302:10: style: The function 'setContent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:93:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:302:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:307:10: style: The function 'setContent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:94:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:307:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:312:10: style: The function 'setToSizeR' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:104:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:312:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:314:10: style: The function 'setToSizeL' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:114:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:314:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:316:10: style: The function 'append' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:122:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:316:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:318:10: style: The function 'append' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:130:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:318:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:320:10: style: The function 'append' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:138:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:320:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:322:10: style: The function 'append' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:146:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:322:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:222:19: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:129:31: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:222:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:245:17: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:169:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:245:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:247:9: style: The function 'charToInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:277:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:247:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:258:18: style: The function 'getSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:68:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:258:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:270:10: style: The function 'hasUniqueAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:70:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:270:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:276:18: style: The function 'getLength' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:66:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:276:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:286:18: style: The function 'getNumberOfTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:308:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:286:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:291:17: style: The function 'getAlphabetType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:445:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:291:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:293:9: style: The function 'getUnknownCharacterCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:403:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:293:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:298:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:426:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:298:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:299:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:432:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:299:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:301:22: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:335:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:301:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:303:30: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:346:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:303:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:305:9: style: The function 'getGeneric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:358:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:305:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:307:17: style: The function 'getGeneric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:371:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:307:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:315:10: style: The function 'containsUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:163:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:315:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:316:10: style: The function 'containsGap' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:165:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:316:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:333:21: style: The function 'getNAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:72:29: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:333:21: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:351:17: style: The function 'getWord' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:74:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:351:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:364:17: style: The function 'getWord' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:86:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:364:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:377:25: style: The function 'getWord' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:98:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:377:25: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:387:9: style: The function 'getNPosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:107:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:387:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:403:22: style: The function 'getPositions' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:115:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:403:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:422:17: style: The function 'getNPosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:124:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:422:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:440:30: style: The function 'getPositions' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:132:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:440:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:473:15: style: The function 'reverse' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:153:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:473:15: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:481:18: style: The function 'getStateCodingSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:452:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:481:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:97:20: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:129:31: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:97:20: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:104:17: style: The function 'getAlphabetType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:445:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:104:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:115:10: style: The function 'containsUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:163:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:115:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:117:10: style: The function 'containsGap' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:165:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:117:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:131:18: style: The function 'getNumberOfTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:308:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:131:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:133:18: style: The function 'getSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:68:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:133:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:138:9: style: The function 'getUnknownCharacterCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:403:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:138:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:143:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:426:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:143:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:148:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:432:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:148:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:153:22: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:335:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:153:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:155:30: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:346:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:155:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:157:9: style: The function 'getGeneric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:358:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:157:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:162:17: style: The function 'getGeneric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:371:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:162:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:167:9: style: The function 'charToInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:277:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:167:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:304:18: style: The function 'getLength' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:66:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:304:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:309:10: style: The function 'hasUniqueAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:70:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:309:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:314:21: style: The function 'getNAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:72:29: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:314:21: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:319:9: style: The function 'getWord' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:74:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:319:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:336:17: style: The function 'getWord' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:98:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:336:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:344:9: style: The function 'getWord' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:86:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:344:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:353:9: style: The function 'getNPosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:107:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:353:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:370:22: style: The function 'getPositions' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:115:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:370:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:390:17: style: The function 'getNPosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:124:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:390:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:401:30: style: The function 'getPositions' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:132:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:401:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:425:15: style: The function 'reverse' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/WordAlphabet.h:153:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:425:15: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:452:18: style: The function 'getStateCodingSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:452:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CodonAlphabet.h:452:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:82:8: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:129:31: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:82:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:90:7: style: The function 'charToInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:277:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:90:7: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:91:15: style: The function 'intToChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:268:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:91:15: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:95:16: style: The function 'getSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:316:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:95:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:96:16: style: The function 'getNumberOfTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:308:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:96:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:97:7: style: The function 'getUnknownCharacterCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:403:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:97:7: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:98:8: style: The function 'isGap' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:414:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:98:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:99:23: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:335:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:99:23: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:100:28: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:346:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:100:28: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:101:8: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:426:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:101:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:102:8: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:432:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:102:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:104:15: style: The function 'getAlphabetType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:445:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/RNY.h:104:15: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:67:21: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:129:31: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:67:21: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:76:18: style: The function 'getSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:316:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:76:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:77:18: style: The function 'getNumberOfTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:308:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:77:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:78:17: style: The function 'getAlphabetType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:445:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:78:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:79:9: style: The function 'getUnknownCharacterCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:403:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:79:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:80:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:426:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:80:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:81:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:432:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:81:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:83:22: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:335:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:83:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:84:30: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:346:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/BinaryAlphabet.h:84:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h:66:5: style: Class 'CaseMaskedAlphabet' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h:77:25: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LetterAlphabet.h:80:29: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h:77:25: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h:83:18: style: The function 'getSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:316:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h:83:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h:84:18: style: The function 'getNumberOfTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:308:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h:84:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h:85:17: style: The function 'getAlphabetType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:445:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h:85:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h:86:9: style: The function 'getUnknownCharacterCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:403:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h:86:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h:87:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:426:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h:87:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h:88:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:432:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h:88:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/IntegerAlphabet.h:60:3: style: Class 'IntegerAlphabet' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/IntegerAlphabet.h:72:20: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:129:31: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/IntegerAlphabet.h:72:20: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/IntegerAlphabet.h:80:16: style: The function 'getSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:316:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/IntegerAlphabet.h:80:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/IntegerAlphabet.h:82:16: style: The function 'getNumberOfTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:308:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/IntegerAlphabet.h:82:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/IntegerAlphabet.h:84:15: style: The function 'getAlphabetType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:445:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/IntegerAlphabet.h:84:15: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/IntegerAlphabet.h:86:7: style: The function 'getUnknownCharacterCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:403:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/IntegerAlphabet.h:86:7: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/IntegerAlphabet.h:88:8: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:426:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/IntegerAlphabet.h:88:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/IntegerAlphabet.h:90:8: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:432:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/IntegerAlphabet.h:90:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LexicalAlphabet.cpp:73:17: style: Variable 's2' is assigned a value that is never used. [unreadVariable]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LexicalAlphabet.h:68:5: style: Class 'LexicalAlphabet' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LexicalAlphabet.h:78:22: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:129:31: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LexicalAlphabet.h:78:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LexicalAlphabet.h:91:18: style: The function 'getSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:316:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LexicalAlphabet.h:91:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LexicalAlphabet.h:99:18: style: The function 'getNumberOfTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:308:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LexicalAlphabet.h:99:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LexicalAlphabet.h:104:17: style: The function 'getAlphabetType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:445:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LexicalAlphabet.h:104:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LexicalAlphabet.h:106:9: style: The function 'getUnknownCharacterCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:403:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LexicalAlphabet.h:106:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LexicalAlphabet.h:111:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:426:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LexicalAlphabet.h:111:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LexicalAlphabet.h:112:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:432:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/LexicalAlphabet.h:112:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp:81:39: style: Function 'setState' argument 1 names different: declaration 'pos' definition 'stateIndex'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:81:26: note: Function 'setState' argument 1 names different: declaration 'pos' definition 'stateIndex'.
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp:81:39: note: Function 'setState' argument 1 names different: declaration 'pos' definition 'stateIndex'.
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:67:5: style: Class 'NumericAlphabet' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:75:22: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:129:31: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:75:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:81:10: style: The function 'setState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:245:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:81:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:82:10: style: The function 'registerState' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:235:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:82:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:86:18: style: The function 'getSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:316:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:86:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:87:18: style: The function 'getNumberOfTypes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:308:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:87:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:88:9: style: The function 'getUnknownCharacterCode' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:403:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:88:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:89:10: style: The function 'isGap' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:414:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:89:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:90:22: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:335:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:90:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:91:30: style: The function 'getAlias' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:346:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:91:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:92:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:426:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:92:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:93:10: style: The function 'isUnresolved' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:432:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:93:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:95:17: style: The function 'getAlphabetType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/Alphabet.h:445:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/NumericAlphabet.h:95:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Alphabet/ProteicAlphabet.cpp:92:15: style: Variable 'AA' is assigned a value that is never used. [unreadVariable]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:65:3: style: Class 'AAIndex1Entry' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:81:18: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:66:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:81:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:84:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:74:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:84:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:90:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:90:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:95:24: style: The function 'getIndexVector' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:94:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:95:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:97:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h:97:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:91:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:91:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:93:18: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:64:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:93:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:95:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:73:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:95:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:102:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:102:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:111:8: style: The function 'isSymmetric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:99:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h:111:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:94:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:73:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:94:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:95:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:95:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:96:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:96:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:97:13: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:64:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:97:13: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:99:8: style: The function 'isSymmetric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:99:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/BLOSUM50.h:99:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:70:3: style: Class 'DefaultNucleotideScore' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:98:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:73:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:98:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:99:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:99:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:100:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:100:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:101:27: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:64:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:101:27: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:103:8: style: The function 'isSymmetric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:99:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h:103:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:132:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:73:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:132:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:133:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:133:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:134:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:134:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:135:31: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:64:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:135:31: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:136:19: style: The function 'getIndexMatrix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:94:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:136:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:141:8: style: The function 'isSymmetric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:99:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h:141:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:95:29: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:64:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:95:29: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:103:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:73:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:103:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:104:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:104:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:105:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:105:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:106:19: style: The function 'getIndexMatrix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:94:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:106:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:111:8: style: The function 'isSymmetric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:99:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h:111:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:88:16: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:64:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:88:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:96:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:73:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:96:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:97:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:97:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:98:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:98:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:100:8: style: The function 'isSymmetric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:99:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleScore.h:100:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/App/SequenceApplicationTools.cpp:309:14: style: Unused variable: format [unusedVariable]
bpp-seq-2.4.0/src/Bpp/Seq/Site.h:74:5: style: Class 'Site' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:93:5: style: Class 'VectorSequenceContainer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:113:5: style: Class 'VectorSequenceContainer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:120:5: style: Class 'VectorSequenceContainer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:95:5: style: Class 'AlignedSequenceContainer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:121:5: style: Class 'AlignedSequenceContainer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:136:5: style: Class 'AlignedSequenceContainer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:110:3: style: Class 'VectorSiteContainer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:113:3: style: Class 'VectorSiteContainer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:114:3: style: Class 'VectorSiteContainer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:115:3: style: Class 'VectorSiteContainer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:58:3: style: Class 'EchinodermMitochondrialGeneticCode' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:59:3: style: Class 'InvertebrateMitochondrialGeneticCode' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:57:3: style: Class 'StandardGeneticCode' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:57:3: style: Class 'VertebrateMitochondrialGeneticCode' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:59:3: style: Class 'YeastMitochondrialGeneticCode' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:57:3: style: Class 'AscidianMitochondrialGeneticCode' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:59:3: style: Class 'MoldMitochondrialGeneticCode' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Io/BppOSequenceReaderFormat.h:64:5: style: Class 'BppOSequenceReaderFormat' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.h:64:5: style: Class 'BppOAlignmentReaderFormat' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Io/BppOSequenceWriterFormat.h:64:5: style: Class 'BppOSequenceWriterFormat' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.h:64:5: style: Class 'BppOAlignmentWriterFormat' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/DistanceMatrix.h:67:5: style: Class 'DistanceMatrix' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/DistanceMatrix.h:79:5: style: Class 'DistanceMatrix' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:147:17: style: The function 'translate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:80:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:147:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:148:25: style: The function 'translate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:88:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:148:25: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:149:23: style: The function 'translate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:96:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:149:23: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:165:29: style: The function 'getSourceAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:65:29: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:165:29: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:166:29: style: The function 'getTargetAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:72:29: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:166:29: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:167:17: style: The function 'reverse' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:117:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:167:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:168:25: style: The function 'reverse' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:125:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:168:25: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:169:23: style: The function 'reverse' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:133:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:169:23: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:108:17: style: The function 'translate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:147:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:108:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:109:25: style: The function 'translate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:148:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:109:25: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:110:23: style: The function 'translate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:149:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:110:23: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/CoreSite.h:183:15: style: The function 'getPosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/CoreSite.h:88:15: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/CoreSite.h:183:15: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/CoreSite.h:185:16: style: The function 'setPosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/CoreSite.h:95:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/CoreSite.h:185:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Site.h:159:17: style: The function 'getPosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/CoreSite.h:183:15: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Site.h:159:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Site.h:166:18: style: The function 'setPosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/CoreSite.h:185:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Site.h:166:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:163:18: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:264:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:163:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:165:24: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:276:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:165:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:221:23: style: The function 'toString' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:102:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:221:23: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:222:27: style: The function 'getSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:111:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:222:27: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:223:16: style: The function 'setSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:144:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:223:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:224:21: style: The function 'removeSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:153:21: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:224:21: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:225:16: style: The function 'deleteSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:162:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:225:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:226:18: style: The function 'getNumberOfSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:169:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:226:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:227:36: style: The function 'getSequencesNames' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:176:36: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:227:36: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:228:16: style: The function 'setSequencesNames' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:188:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:228:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:229:27: style: The function 'getComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:198:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:229:27: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:230:16: style: The function 'setComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:208:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:230:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:123:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:93:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:123:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:125:17: style: The function 'toString' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:221:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:125:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:130:19: style: The function 'getComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:229:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:130:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:135:8: style: The function 'setComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:230:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:135:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:136:19: style: The function 'getGeneralComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:215:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:136:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:141:8: style: The function 'setGeneralComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:222:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:141:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:146:8: style: The function 'deleteGeneralComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:227:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:146:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:158:30: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:122:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:158:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:163:25: style: The function 'toString' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:72:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:163:25: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:168:27: style: The function 'getComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:132:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:168:27: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:173:16: style: The function 'setComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:142:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:173:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:165:10: style: The function 'hasSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:119:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:165:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:167:21: style: The function 'getSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:222:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:167:21: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:174:15: style: The function 'removeSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:224:21: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:174:15: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:179:10: style: The function 'deleteSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:225:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:179:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:184:12: style: The function 'getNumberOfSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:226:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:184:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:186:30: style: The function 'getSequencesNames' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:227:36: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:186:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:188:10: style: The function 'clear' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:232:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:188:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:191:10: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:163:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:191:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:196:16: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:165:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:196:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:201:10: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:288:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:201:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:206:16: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:300:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:206:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:211:10: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:176:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:211:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:216:16: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:187:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:216:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:221:10: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:199:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:221:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:225:17: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:211:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:225:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:237:10: style: The function 'setComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:230:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:237:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:242:10: style: The function 'setComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:173:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:242:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:243:12: style: The function 'getSequencePosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:151:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:243:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:244:21: style: The function 'getSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:82:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:244:21: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:246:15: style: The function 'removeSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:103:21: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:246:15: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:247:10: style: The function 'deleteSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:112:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:247:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:159:17: style: The function 'getSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:80:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:159:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:161:14: style: The function 'removeSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:141:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:161:14: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:162:14: style: The function 'deleteSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:149:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:162:14: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:163:13: style: The function 'deleteSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:158:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:163:13: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:168:12: style: The function 'getNumberOfSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:166:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:168:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:169:10: style: The function 'getSitePositions' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:178:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:169:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:170:10: style: The function 'reindexSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:171:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:170:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:171:10: style: The function 'clear' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:232:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:171:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:183:10: style: The function 'addSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:270:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:183:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:184:10: style: The function 'addSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:288:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:184:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:138:15: style: The function 'getSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:80:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:138:15: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:140:12: style: The function 'removeSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:141:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:140:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:141:12: style: The function 'deleteSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:149:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:141:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:142:11: style: The function 'deleteSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:158:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:142:11: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:147:10: style: The function 'getNumberOfSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:166:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:147:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:148:8: style: The function 'reindexSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:171:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:148:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:149:8: style: The function 'getSitePositions' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:178:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:149:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:160:8: style: The function 'setComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:173:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:160:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:163:19: style: The function 'getSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:82:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:163:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:164:19: style: The function 'getSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:222:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:164:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:165:8: style: The function 'hasSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:119:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:165:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:169:10: style: The function 'getSequencePosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:151:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:169:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:171:13: style: The function 'removeSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:103:21: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:171:13: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:172:13: style: The function 'removeSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:224:21: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:172:13: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:174:8: style: The function 'deleteSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:112:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:174:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:175:8: style: The function 'deleteSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:225:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:175:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:177:10: style: The function 'getNumberOfSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:226:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:177:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:179:28: style: The function 'getSequencesNames' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:227:36: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:179:28: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:183:8: style: The function 'clear' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:232:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:183:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:187:8: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:163:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:187:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:192:14: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:165:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:192:14: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:197:8: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:288:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:197:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:201:14: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:300:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:201:14: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:206:8: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:176:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:206:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:212:14: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:187:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:212:14: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:218:8: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:199:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:218:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:222:14: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:211:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:222:14: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:231:8: style: The function 'setSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:223:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:231:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:232:8: style: The function 'setSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:94:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:232:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:62:49: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:98:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:62:49: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:67:12: style: The function 'getNumberOfStopCodons' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:126:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:67:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:69:22: style: The function 'getStopCodonsAsInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:131:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:69:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:76:30: style: The function 'getStopCodonsAsChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:136:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:76:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:83:10: style: The function 'isStop' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:144:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:83:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:89:10: style: The function 'isStop' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:152:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:89:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:94:10: style: The function 'isAltStart' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:182:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:94:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:100:10: style: The function 'isAltStart' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:190:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:100:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:63:51: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:98:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:63:51: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:68:12: style: The function 'getNumberOfStopCodons' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:126:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:68:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:70:22: style: The function 'getStopCodonsAsInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:131:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:70:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:77:30: style: The function 'getStopCodonsAsChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:136:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:77:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:84:10: style: The function 'isStop' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:144:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:84:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:90:10: style: The function 'isStop' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:152:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:90:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:95:10: style: The function 'isAltStart' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:182:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:95:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:101:10: style: The function 'isAltStart' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:190:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:101:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:61:34: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:98:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:61:34: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:66:12: style: The function 'getNumberOfStopCodons' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:126:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:66:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:68:22: style: The function 'getStopCodonsAsInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:131:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:68:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:76:30: style: The function 'getStopCodonsAsChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:136:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:76:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:84:10: style: The function 'isStop' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:144:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:84:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:90:10: style: The function 'isStop' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:152:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:90:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:95:10: style: The function 'isAltStart' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:182:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:95:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:101:10: style: The function 'isAltStart' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:190:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:101:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:61:49: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:98:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:61:49: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:66:12: style: The function 'getNumberOfStopCodons' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:126:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:66:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:68:22: style: The function 'getStopCodonsAsInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:131:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:68:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:77:30: style: The function 'getStopCodonsAsChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:136:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:77:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:86:10: style: The function 'isStop' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:144:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:86:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:92:10: style: The function 'isStop' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:152:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:92:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:97:10: style: The function 'isAltStart' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:182:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:97:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:103:10: style: The function 'isAltStart' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:190:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:103:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:63:44: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:98:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:63:44: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:68:12: style: The function 'getNumberOfStopCodons' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:126:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:68:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:70:22: style: The function 'getStopCodonsAsInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:131:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:70:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:77:30: style: The function 'getStopCodonsAsChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:136:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:77:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:84:10: style: The function 'isStop' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:144:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:84:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:90:10: style: The function 'isStop' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:152:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:90:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:95:10: style: The function 'isAltStart' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:182:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:95:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:101:10: style: The function 'isAltStart' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:190:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:101:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:61:47: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:98:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:61:47: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:66:12: style: The function 'getNumberOfStopCodons' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:126:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:66:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:68:22: style: The function 'getStopCodonsAsInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:131:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:68:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:77:30: style: The function 'getStopCodonsAsChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:136:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:77:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:86:10: style: The function 'isStop' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:144:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:86:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:92:10: style: The function 'isStop' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:152:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:92:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:97:10: style: The function 'isAltStart' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:182:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:97:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:103:10: style: The function 'isAltStart' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:190:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:103:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:63:43: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:98:26: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:63:43: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:68:12: style: The function 'getNumberOfStopCodons' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:126:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:68:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:70:22: style: The function 'getStopCodonsAsInt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:131:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:70:22: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:77:30: style: The function 'getStopCodonsAsChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:136:38: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:77:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:84:10: style: The function 'isStop' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:144:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:84:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:90:10: style: The function 'isStop' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:152:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:90:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:95:10: style: The function 'isAltStart' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:182:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:95:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:101:10: style: The function 'isAltStart' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:190:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:101:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/NucleicAcidsReplication.h:90:21: style: The function 'getSourceAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:65:29: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/NucleicAcidsReplication.h:90:21: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/NucleicAcidsReplication.h:91:21: style: The function 'getTargetAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:72:29: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/NucleicAcidsReplication.h:91:21: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/NucleicAcidsReplication.h:93:9: style: The function 'translate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:80:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/NucleicAcidsReplication.h:93:9: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/NucleicAcidsReplication.h:94:17: style: The function 'translate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:88:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/NucleicAcidsReplication.h:94:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/NucleicAcidsReplication.h:95:17: style: The function 'translate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:96:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/NucleicAcidsReplication.h:95:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/NucleicAcidsReplication.h:96:17: style: The function 'reverse' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:117:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/NucleicAcidsReplication.h:96:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/NucleicAcidsReplication.h:97:17: style: The function 'reverse' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:125:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/NucleicAcidsReplication.h:97:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/NucleicAcidsReplication.h:98:17: style: The function 'reverse' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:133:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/NucleicAcidsReplication.h:98:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/App/SequenceApplicationTools.cpp:419:9: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
bpp-seq-2.4.0/src/Bpp/Seq/CodonSiteTools.cpp:144:15: style: Unused variable: prot [unusedVariable]
bpp-seq-2.4.0/src/Bpp/Seq/CodonSiteTools.cpp:179:84: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/CodonSiteTools.cpp:474:74: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/CodonSiteTools.cpp:476:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/CodonSiteTools.cpp:509:74: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/CodonSiteTools.cpp:511:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/CodonSiteTools.cpp:581:72: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/CodonSiteTools.cpp:662:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/CodonSiteTools.cpp:665:78: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:134:54: style: Function 'getSite' argument 1 names different: declaration 'siteIndex' definition 'i'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:159:32: note: Function 'getSite' argument 1 names different: declaration 'siteIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:134:54: note: Function 'getSite' argument 1 names different: declaration 'siteIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:155:47: style: Function 'setSite' argument 1 names different: declaration 'siteIndex' definition 'pos'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:160:32: note: Function 'setSite' argument 1 names different: declaration 'siteIndex' definition 'pos'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:155:47: note: Function 'setSite' argument 1 names different: declaration 'siteIndex' definition 'pos'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:155:75: style: Function 'setSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:160:66: note: Function 'setSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:155:75: note: Function 'setSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:189:51: style: Function 'removeSite' argument 1 names different: declaration 'siteIndex' definition 'pos'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:161:32: note: Function 'removeSite' argument 1 names different: declaration 'siteIndex' definition 'pos'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:189:51: note: Function 'removeSite' argument 1 names different: declaration 'siteIndex' definition 'pos'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:219:50: style: Function 'deleteSite' argument 1 names different: declaration 'siteIndex' definition 'pos'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:162:32: note: Function 'deleteSite' argument 1 names different: declaration 'siteIndex' definition 'pos'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:219:50: note: Function 'deleteSite' argument 1 names different: declaration 'siteIndex' definition 'pos'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:270:63: style: Function 'addSite' argument 2 names different: declaration 'checkPosition' definition 'checkPositions'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:164:41: note: Function 'addSite' argument 2 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:270:63: note: Function 'addSite' argument 2 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:307:77: style: Function 'addSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:165:55: note: Function 'addSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:307:77: note: Function 'addSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:343:81: style: Function 'addSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:166:59: note: Function 'addSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:343:81: note: Function 'addSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:383:95: style: Function 'addSite' argument 4 names different: declaration 'checkPosition' definition 'checkPositions'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:167:73: note: Function 'addSite' argument 4 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:383:95: note: Function 'addSite' argument 4 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:433:51: style: Function 'setSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:181:29: note: Function 'setSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:433:51: note: Function 'setSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:478:77: style: Function 'addSequence' argument 2 names different: declaration 'sequenceIndex' definition 'i'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.h:184:55: note: Function 'addSequence' argument 2 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:478:77: note: Function 'addSequence' argument 2 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:576:8: style: The scope of the variable 'test' can be reduced. [variableScope]
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:229:59: style: Function 'getSite' argument 1 names different: declaration 'siteIndex' definition 'i'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:142:30: note: Function 'getSite' argument 1 names different: declaration 'siteIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:229:59: note: Function 'getSite' argument 1 names different: declaration 'siteIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:238:52: style: Function 'setSite' argument 1 names different: declaration 'siteIndex' definition 'pos'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:143:30: note: Function 'setSite' argument 1 names different: declaration 'siteIndex' definition 'pos'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:238:52: note: Function 'setSite' argument 1 names different: declaration 'siteIndex' definition 'pos'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:238:80: style: Function 'setSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:143:64: note: Function 'setSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:238:80: note: Function 'setSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:315:56: style: Function 'removeSite' argument 1 names different: declaration 'siteIndex' definition 'i'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:144:30: note: Function 'removeSite' argument 1 names different: declaration 'siteIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:315:56: note: Function 'removeSite' argument 1 names different: declaration 'siteIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:367:68: style: Function 'addSite' argument 2 names different: declaration 'checkPosition' definition 'checkPositions'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:147:84: note: Function 'addSite' argument 2 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:367:68: note: Function 'addSite' argument 2 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:390:86: style: Function 'addSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:152:78: note: Function 'addSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:390:86: note: Function 'addSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:439:67: style: Function 'getSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:172:38: note: Function 'getSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:439:67: note: Function 'getSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:418:70: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:118:3: style: Class 'CompressedVectorSiteContainer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:121:3: style: Class 'CompressedVectorSiteContainer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:142:15: style: The function 'getSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:80:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:142:15: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:144:12: style: The function 'removeSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:141:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:144:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:145:12: style: The function 'deleteSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:149:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:145:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:146:11: style: The function 'deleteSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:158:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:146:11: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:157:10: style: The function 'getNumberOfSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:166:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:157:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:158:8: style: The function 'reindexSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:171:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:158:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:159:8: style: The function 'getSitePositions' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainer.h:178:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:159:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:169:8: style: The function 'setComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:173:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:169:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:172:19: style: The function 'getSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:82:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:172:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:173:19: style: The function 'getSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:222:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:173:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:174:8: style: The function 'hasSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:119:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:174:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:178:10: style: The function 'getSequencePosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:151:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:178:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:180:13: style: The function 'removeSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:103:21: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:180:13: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:186:13: style: The function 'removeSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:224:21: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:186:13: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:192:8: style: The function 'deleteSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:112:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:192:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:198:8: style: The function 'deleteSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:225:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:198:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:204:10: style: The function 'getNumberOfSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:226:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:204:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:206:28: style: The function 'getSequencesNames' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:227:36: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:206:28: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:210:8: style: The function 'clear' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:232:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:210:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:214:8: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:163:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:214:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:219:14: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:165:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:219:14: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:224:8: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:288:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:224:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:228:14: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:300:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:228:14: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:233:8: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:176:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:233:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:239:14: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:187:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:239:14: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:245:8: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:199:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:245:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:249:14: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:211:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:249:14: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:267:8: style: The function 'setSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:223:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:267:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:273:8: style: The function 'setSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:94:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:273:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:94:58: style: Function 'getSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:217:38: note: Function 'getSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:94:58: note: Function 'getSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:178:47: style: Function 'setSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:219:38: note: Function 'setSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:178:47: note: Function 'setSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:178:81: style: Function 'setSequence' argument 3 names different: declaration 'checkName' definition 'checkNames'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:219:84: note: Function 'setSequence' argument 3 names different: declaration 'checkName' definition 'checkNames'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:178:81: note: Function 'setSequence' argument 3 names different: declaration 'checkName' definition 'checkNames'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:207:91: style: Function 'setSequence' argument 3 names different: declaration 'checkName' definition 'checkNames'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:170:76: note: Function 'setSequence' argument 3 names different: declaration 'checkName' definition 'checkNames'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:207:91: note: Function 'setSequence' argument 3 names different: declaration 'checkName' definition 'checkNames'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:263:55: style: Function 'removeSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:220:38: note: Function 'removeSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:263:55: note: Function 'removeSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:304:50: style: Function 'deleteSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:221:38: note: Function 'deleteSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:304:50: note: Function 'deleteSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:53:80: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:100:42: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:111:96: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:122:96: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:135:34: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:144:90: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:167:96: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:185:98: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:213:98: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:241:98: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:268:34: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:278:90: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:309:34: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:318:90: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:348:98: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:356:96: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:371:96: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:383:36: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:408:38: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:417:96: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:439:5: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.cpp:448:91: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:71:3: style: Class 'MapSequenceContainer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:159:19: style: The function 'getSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:222:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:159:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:161:8: style: The function 'hasSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:119:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:161:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:171:13: style: The function 'removeSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:224:21: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:171:13: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:172:8: style: The function 'deleteSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:225:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:172:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:173:10: style: The function 'getNumberOfSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:226:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:173:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:174:8: style: The function 'clear' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:232:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:174:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:177:10: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:163:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:177:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:181:16: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:165:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:181:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:185:10: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:288:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:185:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:189:16: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainer.h:300:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:189:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:194:10: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:176:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:194:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:198:16: style: The function 'valueAt' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:187:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:198:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:202:10: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:199:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:202:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:206:16: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:211:24: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:206:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:217:19: style: The function 'getSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:82:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:217:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:218:10: style: The function 'getSequencePosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:151:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:218:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:220:16: style: The function 'removeSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:103:21: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:220:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:221:16: style: The function 'deleteSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:112:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:221:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:222:8: style: The function 'setComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/AbstractSequenceContainer.h:173:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:222:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:223:28: style: The function 'getSequencesNames' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:227:36: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:223:28: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:224:8: style: The function 'setSequencesNames' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Container/OrderedSequenceContainer.h:228:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/MapSequenceContainer.h:224:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainerIterator.cpp:51:102: style: Function 'AbstractSequenceContainerIterator' argument 1 names different: declaration 'sites' definition 'sequences'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainerIterator.h:61:69: note: Function 'AbstractSequenceContainerIterator' argument 1 names different: declaration 'sites' definition 'sequences'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainerIterator.cpp:51:102: note: Function 'AbstractSequenceContainerIterator' argument 1 names different: declaration 'sites' definition 'sequences'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainerIterator.cpp:58:98: style: Function 'SimpleSequenceContainerIterator' argument 1 names different: declaration 'sites' definition 'sequences'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainerIterator.h:86:67: note: Function 'SimpleSequenceContainerIterator' argument 1 names different: declaration 'sites' definition 'sequences'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainerIterator.cpp:58:98: note: Function 'SimpleSequenceContainerIterator' argument 1 names different: declaration 'sites' definition 'sequences'.
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:144:5: style: Class 'SequenceWithAnnotation' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:223:5: style: Class 'SequenceWithAnnotation' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:233:7: style: Class 'SequenceWithQuality' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:460:7: style: Class 'SequenceWithQuality' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainerIterator.h:61:3: style: Class 'AbstractSequenceContainerIterator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainerIterator.h:86:3: style: Class 'SimpleSequenceContainerIterator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:61:33: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:454:33: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:61:33: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:268:24: style: The function 'getName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:93:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:268:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:275:10: style: The function 'setName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:100:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:275:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:290:21: style: The function 'getComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:114:29: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:290:21: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:297:10: style: The function 'setComments' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/CoreSequence.h:121:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:297:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:314:18: style: The function 'setContent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:92:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:314:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:315:10: style: The function 'setContent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:93:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:315:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:319:10: style: The function 'setContent' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:94:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:319:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:325:10: style: The function 'setToSizeR' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:104:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:325:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:327:10: style: The function 'setToSizeL' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:114:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:327:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:335:10: style: The function 'append' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:122:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:335:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:337:10: style: The function 'append' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:130:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:337:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:339:10: style: The function 'append' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:138:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:339:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:341:10: style: The function 'append' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Sequence.h:146:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:341:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:127:24: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:61:33: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:127:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:131:12: style: The function 'init' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:68:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:131:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:137:26: style: The function 'getType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:73:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:137:26: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:139:12: style: The function 'isValidWith' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:139:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:145:12: style: The function 'isRemovable' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:457:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:145:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:146:12: style: The function 'isShared' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:458:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:146:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:147:12: style: The function 'beforeSequenceChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:459:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:147:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:148:12: style: The function 'afterSequenceChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:460:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:148:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:149:12: style: The function 'beforeSequenceInserted' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:461:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:149:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:150:12: style: The function 'afterSequenceInserted' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:462:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:150:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:151:12: style: The function 'beforeSequenceDeleted' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:463:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:151:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:152:12: style: The function 'afterSequenceDeleted' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:464:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:152:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:153:12: style: The function 'beforeSequenceSubstituted' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:465:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:153:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:154:12: style: The function 'afterSequenceSubstituted' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:466:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:154:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:184:12: style: The function 'merge' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:90:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:184:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:194:24: style: The function 'getPartAnnotation' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:98:33: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQuality.h:194:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainerIterator.h:90:19: style: The function 'nextSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceIterator.h:73:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainerIterator.h:90:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainerIterator.h:91:8: style: The function 'hasMoreSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceIterator.h:74:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainerIterator.h:91:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SequenceContainerTools.cpp:178:64: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerIterator.h:61:3: style: Class 'AbstractSiteContainerIterator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerIterator.h:84:3: style: Class 'SimpleSiteContainerIterator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerIterator.h:98:3: style: Class 'NoGapSiteContainerIterator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerIterator.h:115:3: style: Class 'CompleteSiteContainerIterator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerIterator.h:88:15: style: The function 'nextSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SiteIterator.h:72:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerIterator.h:88:15: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerIterator.h:89:8: style: The function 'hasMoreSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SiteIterator.h:73:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerIterator.h:89:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerIterator.h:102:15: style: The function 'nextSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SiteIterator.h:72:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerIterator.h:102:15: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerIterator.h:103:8: style: The function 'hasMoreSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SiteIterator.h:73:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerIterator.h:103:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerIterator.h:119:16: style: The function 'nextSite' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SiteIterator.h:72:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerIterator.h:119:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerIterator.h:120:8: style: The function 'hasMoreSites' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SiteIterator.h:73:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerIterator.h:120:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerTools.cpp:147:15: style: The scope of the variable 'site' can be reduced. [variableScope]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerTools.cpp:553:7: style: The scope of the variable 'state1' can be reduced. [variableScope]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerTools.cpp:554:7: style: The scope of the variable 'state2' can be reduced. [variableScope]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerTools.cpp:626:8: style: The scope of the variable 'c' can be reduced. [variableScope]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerTools.cpp:763:8: style: The scope of the variable 'c' can be reduced. [variableScope]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerTools.cpp:157:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerTools.cpp:168:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerTools.cpp:700:15: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-seq-2.4.0/src/Bpp/Seq/Container/SiteContainerTools.cpp:704:15: warning: Passing value 0. to log() leads to implementation-defined result. [wrongmathcall]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:88:28: style: Function 'VectorSequenceContainer' argument 1 names different: declaration 'osc' definition 'sc'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:120:54: note: Function 'VectorSequenceContainer' argument 1 names different: declaration 'osc' definition 'sc'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:88:28: note: Function 'VectorSequenceContainer' argument 1 names different: declaration 'osc' definition 'sc'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:139:28: style: Function 'operator=' argument 1 names different: declaration 'osc' definition 'sc'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:143:65: note: Function 'operator=' argument 1 names different: declaration 'osc' definition 'sc'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:139:28: note: Function 'operator=' argument 1 names different: declaration 'osc' definition 'sc'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:193:56: style: Function 'getSequence_' argument 1 names different: declaration 'i' definition 'sequenceIndex'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:297:35: note: Function 'getSequence_' argument 1 names different: declaration 'i' definition 'sequenceIndex'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:193:56: note: Function 'getSequence_' argument 1 names different: declaration 'i' definition 'sequenceIndex'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:55:83: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:270:18: warning: Virtual function 'addSequence' is called from constructor 'VectorSequenceContainer(const std::vector<const Sequence*>&vs,const Alphabet*alpha)' at line 57. Dynamic binding is not used. [virtualCallInConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:57:5: note: Calling addSequence
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:270:18: note: addSequence is a virtual method
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:270:18: warning: Virtual function 'addSequence' is called from copy constructor 'VectorSequenceContainer(const VectorSequenceContainer&vsc)' at line 71. Dynamic binding is not used. [virtualCallInConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:71:5: note: Calling addSequence
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:270:18: note: addSequence is a virtual method
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:270:18: warning: Virtual function 'addSequence' is called from constructor 'VectorSequenceContainer(const OrderedSequenceContainer&osc)' at line 83. Dynamic binding is not used. [virtualCallInConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:83:5: note: Calling addSequence
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:270:18: note: addSequence is a virtual method
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:270:18: warning: Virtual function 'addSequence' is called from constructor 'VectorSequenceContainer(const SequenceContainer&osc)' at line 96. Dynamic binding is not used. [virtualCallInConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:96:5: note: Calling addSequence
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSequenceContainer.h:270:18: note: addSequence is a virtual method
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:289:49: style: Function 'getSite' argument 1 names different: declaration 'siteIndex' definition 'i'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:138:30: note: Function 'getSite' argument 1 names different: declaration 'siteIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:289:49: note: Function 'getSite' argument 1 names different: declaration 'siteIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:298:42: style: Function 'setSite' argument 1 names different: declaration 'siteIndex' definition 'pos'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:139:30: note: Function 'setSite' argument 1 names different: declaration 'siteIndex' definition 'pos'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:298:42: note: Function 'setSite' argument 1 names different: declaration 'siteIndex' definition 'pos'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:298:70: style: Function 'setSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:139:64: note: Function 'setSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:298:70: note: Function 'setSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:328:46: style: Function 'removeSite' argument 1 names different: declaration 'siteIndex' definition 'i'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:140:30: note: Function 'removeSite' argument 1 names different: declaration 'siteIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:328:46: note: Function 'removeSite' argument 1 names different: declaration 'siteIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:339:45: style: Function 'deleteSite' argument 1 names different: declaration 'siteIndex' definition 'i'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:141:30: note: Function 'deleteSite' argument 1 names different: declaration 'siteIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:339:45: note: Function 'deleteSite' argument 1 names different: declaration 'siteIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:362:58: style: Function 'addSite' argument 2 names different: declaration 'checkPosition' definition 'checkPositions'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:143:78: note: Function 'addSite' argument 2 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:362:58: note: Function 'addSite' argument 2 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:391:72: style: Function 'addSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:144:78: note: Function 'addSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:391:72: note: Function 'addSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:420:76: style: Function 'addSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:145:78: note: Function 'addSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:420:76: note: Function 'addSite' argument 3 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:453:90: style: Function 'addSite' argument 4 names different: declaration 'checkPosition' definition 'checkPositions'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:146:78: note: Function 'addSite' argument 4 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:453:90: note: Function 'addSite' argument 4 names different: declaration 'checkPosition' definition 'checkPositions'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:528:57: style: Function 'getSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:163:38: note: Function 'getSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:528:57: note: Function 'getSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:583:90: style: Function 'setSequence' argument 3 names different: declaration 'checkName' definition 'checkNames'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:231:79: note: Function 'setSequence' argument 3 names different: declaration 'checkName' definition 'checkNames'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:583:90: note: Function 'setSequence' argument 3 names different: declaration 'checkName' definition 'checkNames'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:592:46: style: Function 'setSequence' argument 1 names different: declaration 'sequenceIndex' definition 'pos'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:232:27: note: Function 'setSequence' argument 1 names different: declaration 'sequenceIndex' definition 'pos'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:592:46: note: Function 'setSequence' argument 1 names different: declaration 'sequenceIndex' definition 'pos'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:592:82: style: Function 'setSequence' argument 3 names different: declaration 'checkName' definition 'checkNames'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:232:73: note: Function 'setSequence' argument 3 names different: declaration 'checkName' definition 'checkNames'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:592:82: note: Function 'setSequence' argument 3 names different: declaration 'checkName' definition 'checkNames'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:635:54: style: Function 'removeSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:171:35: note: Function 'removeSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:635:54: note: Function 'removeSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:670:49: style: Function 'deleteSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:174:30: note: Function 'deleteSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:670:49: note: Function 'deleteSequence' argument 1 names different: declaration 'sequenceIndex' definition 'i'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:700:70: style: Function 'addSequence' argument 2 names different: declaration 'checkName' definition 'checkNames'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:228:79: note: Function 'addSequence' argument 2 names different: declaration 'checkName' definition 'checkNames'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:700:70: note: Function 'addSequence' argument 2 names different: declaration 'checkName' definition 'checkNames'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:742:10: style: Function 'addSequence' argument 2 names different: declaration 'sequenceIndex' definition 'pos'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:229:53: note: Function 'addSequence' argument 2 names different: declaration 'sequenceIndex' definition 'pos'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:742:10: note: Function 'addSequence' argument 2 names different: declaration 'sequenceIndex' definition 'pos'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:743:8: style: Function 'addSequence' argument 3 names different: declaration 'checkName' definition 'checkNames'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.h:229:73: note: Function 'addSequence' argument 3 names different: declaration 'checkName' definition 'checkNames'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:743:8: note: Function 'addSequence' argument 3 names different: declaration 'checkName' definition 'checkNames'.
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:496:70: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Container/VectorSiteContainer.cpp:520:70: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/DNAToRNA.h:80:27: style: The function 'getSourceAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:165:29: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/DNAToRNA.h:80:27: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/DNAToRNA.h:81:27: style: The function 'getTargetAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:166:29: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/DNAToRNA.h:81:27: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/DNAToRNA.h:88:7: style: The function 'reverse' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:167:17: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/DNAToRNA.h:88:7: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/DNAToRNA.h:89:17: style: The function 'reverse' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:168:25: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/DNAToRNA.h:89:17: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/DNAToRNA.h:90:13: style: The function 'reverse' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Transliterator.h:169:23: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/DNAToRNA.h:90:13: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.cpp:119:45: style: Function 'isFourFoldDegenerated' argument 1 names different: declaration 'codon' definition 'val'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.h:226:36: note: Function 'isFourFoldDegenerated' argument 1 names different: declaration 'codon' definition 'val'.
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/GeneticCode.cpp:119:45: note: Function 'isFourFoldDegenerated' argument 1 names different: declaration 'codon' definition 'val'.
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp:48:85: style: Function 'YeastMitochondrialGeneticCode' argument 1 names different: declaration 'alphaibet' definition 'alphabet'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:59:56: note: Function 'YeastMitochondrialGeneticCode' argument 1 names different: declaration 'alphaibet' definition 'alphabet'.
bpp-seq-2.4.0/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp:48:85: note: Function 'YeastMitochondrialGeneticCode' argument 1 names different: declaration 'alphaibet' definition 'alphabet'.
bpp-seq-2.4.0/src/Bpp/Seq/Io/Mase.h:103:10: style: Technically the member function 'bpp::MaseHeader::setTree' can be const. [functionConst]
bpp-seq-2.4.0/src/Bpp/Seq/Io/Mase.h:106:10: style: Technically the member function 'bpp::MaseHeader::setSiteSelection' can be const. [functionConst]
bpp-seq-2.4.0/src/Bpp/Seq/Io/Mase.h:109:10: style: Technically the member function 'bpp::MaseHeader::setSequenceSelection' can be const. [functionConst]
bpp-seq-2.4.0/src/Bpp/Seq/Io/AbstractOSequence.h:73:8: style: The function 'writeSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/OSequence.h:74:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/AbstractOSequence.h:73:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/AbstractOSequence.h:92:8: style: The function 'writeAlignment' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/OSequence.h:111:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/AbstractOSequence.h:92:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Mase.h:177:10: style: The function 'appendSequencesFromStream' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/AbstractISequence.h:123:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Mase.h:177:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Mase.h:185:10: style: The function 'appendAlignmentFromStream' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/AbstractIAlignment.h:124:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Mase.h:185:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/AbstractOAlignment.h:72:8: style: The function 'writeAlignment' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/OSequence.h:111:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/AbstractOAlignment.h:72:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Phylip.h:111:10: style: The function 'appendAlignmentFromStream' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/AbstractIAlignment.h:124:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Phylip.h:111:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Phylip.h:122:32: style: The function 'readSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/ISequence.h:81:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Phylip.h:122:32: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Phylip.h:125:32: style: The function 'readSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/ISequence.h:90:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Phylip.h:125:32: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Phylip.h:143:10: style: The function 'writeAlignment' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/OSequence.h:111:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Phylip.h:143:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Phylip.h:144:10: style: The function 'writeAlignment' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/OSequence.h:122:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Phylip.h:144:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.h:102:10: style: The function 'appendSequencesFromStream' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/AbstractISequence.h:123:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.h:102:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.h:110:10: style: The function 'appendAlignmentFromStream' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/AbstractIAlignment.h:124:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.h:110:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.h:145:10: style: The function 'nextSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/ISequenceStream.h:75:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.h:145:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.h:153:10: style: The function 'writeSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/OSequenceStream.h:74:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.h:153:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.h:188:14: style: The function 'build' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/SequenceFileIndex.h:61:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.h:188:14: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.h:198:24: style: The function 'getSequencePosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/SequenceFileIndex.h:66:30: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.h:198:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.h:199:16: style: The function 'getNumberOfSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/SequenceFileIndex.h:71:22: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.h:199:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Clustal.h:89:8: style: The function 'appendAlignmentFromStream' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/AbstractIAlignment.h:124:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Clustal.h:89:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Clustal.h:100:30: style: The function 'readSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/ISequence.h:81:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Clustal.h:100:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Clustal.h:103:30: style: The function 'readSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/ISequence.h:90:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Clustal.h:103:30: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Clustal.h:113:8: style: The function 'writeAlignment' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/OSequence.h:111:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Clustal.h:113:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Dcse.h:76:10: style: The function 'appendAlignmentFromStream' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/AbstractIAlignment.h:124:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Dcse.h:76:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Dcse.h:87:32: style: The function 'readSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/ISequence.h:81:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Dcse.h:87:32: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Dcse.h:90:32: style: The function 'readSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/ISequence.h:90:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Dcse.h:90:32: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/NexusIoSequence.h:101:10: style: The function 'appendAlignmentFromStream' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/AbstractIAlignment.h:124:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/NexusIoSequence.h:101:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/NexusIoSequence.h:112:32: style: The function 'readSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/ISequence.h:81:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/NexusIoSequence.h:112:32: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/NexusIoSequence.h:115:32: style: The function 'readSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/ISequence.h:90:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/NexusIoSequence.h:115:32: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Stockholm.h:71:5: style: Class 'Stockholm' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Io/Stockholm.h:83:10: style: The function 'writeAlignment' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/OSequence.h:111:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Stockholm.h:83:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h:103:28: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:66:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h:103:28: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h:106:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:74:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h:106:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h:112:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h:112:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h:117:24: style: The function 'getIndexVector' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:94:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h:117:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h:119:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h:119:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h:106:26: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:66:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h:106:26: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h:109:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:74:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h:109:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h:115:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h:115:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h:120:24: style: The function 'getIndexVector' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:94:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h:120:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h:122:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h:122:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h:103:26: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:66:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h:103:26: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h:106:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:74:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h:106:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h:112:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h:112:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h:117:24: style: The function 'getIndexVector' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:94:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h:117:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h:119:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h:119:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h:89:28: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:66:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h:89:28: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h:92:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:74:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h:92:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h:98:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h:98:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h:103:24: style: The function 'getIndexVector' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:94:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h:103:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h:105:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h:105:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h:89:28: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:66:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h:89:28: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h:92:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:74:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h:92:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h:98:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h:98:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h:103:24: style: The function 'getIndexVector' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:94:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h:103:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h:105:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h:105:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h:89:26: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:66:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h:89:26: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h:92:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:74:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h:92:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h:98:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h:98:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h:103:24: style: The function 'getIndexVector' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:94:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h:103:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h:105:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h:105:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h:101:37: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:66:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h:101:37: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h:104:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:74:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h:104:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h:110:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h:110:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h:115:24: style: The function 'getIndexVector' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:94:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h:115:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h:117:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h:117:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h:87:19: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:66:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h:87:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h:90:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:74:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h:90:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h:96:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h:96:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h:101:24: style: The function 'getIndexVector' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:94:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h:101:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h:103:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h:103:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAMassIndex.h:87:16: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:66:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAMassIndex.h:87:16: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAMassIndex.h:90:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:74:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAMassIndex.h:90:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAMassIndex.h:96:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAMassIndex.h:96:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAMassIndex.h:101:24: style: The function 'getIndexVector' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:94:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAMassIndex.h:101:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAMassIndex.h:103:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAMassIndex.h:103:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h:89:18: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:66:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h:89:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h:92:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:74:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h:92:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h:98:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h:98:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h:103:24: style: The function 'getIndexVector' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:94:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h:103:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h:105:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h:105:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChargeIndex.h:130:18: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:66:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChargeIndex.h:130:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChargeIndex.h:133:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:74:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChargeIndex.h:133:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChargeIndex.h:139:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChargeIndex.h:139:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChargeIndex.h:144:24: style: The function 'getIndexVector' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:94:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChargeIndex.h:144:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChargeIndex.h:146:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AAChargeIndex.h:146:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h:87:20: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:66:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h:87:20: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h:90:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:74:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h:90:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h:96:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h:96:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h:101:24: style: The function 'getIndexVector' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:94:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h:101:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h:103:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h:103:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEA1030Index.h:87:19: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:66:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEA1030Index.h:87:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEA1030Index.h:90:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:74:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEA1030Index.h:90:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEA1030Index.h:96:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEA1030Index.h:96:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEA1030Index.h:101:24: style: The function 'getIndexVector' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:94:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEA1030Index.h:101:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEA1030Index.h:103:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEA1030Index.h:103:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEASup30Index.h:87:20: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:66:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEASup30Index.h:87:20: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEASup30Index.h:90:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:74:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEASup30Index.h:90:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEASup30Index.h:96:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEASup30Index.h:96:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEASup30Index.h:101:24: style: The function 'getIndexVector' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:94:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEASup30Index.h:101:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEASup30Index.h:103:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AASEASup30Index.h:103:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h:69:3: style: Class 'SimpleIndexDistance' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h:89:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:73:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h:89:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h:95:10: style: The function 'getIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h:95:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h:101:19: style: The function 'getAlphabet' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:89:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h:101:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h:103:24: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:64:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h:103:24: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h:105:19: style: The function 'getIndexMatrix' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:94:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h:105:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h:121:8: style: The function 'isSymmetric' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h:99:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h:121:8: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/GenBank.h:75:10: style: The function 'appendSequencesFromStream' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/AbstractISequence.h:123:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/GenBank.h:75:10: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.cpp:64:8: style: The scope of the variable 'c' can be reduced. [variableScope]
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.cpp:152:8: style: The scope of the variable 'last_c' can be reduced. [variableScope]
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.cpp:147:74: style: Function 'appendSequencesFromStream' argument 2 names different: declaration 'sc' definition 'vsc'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.h:102:76: note: Function 'appendSequencesFromStream' argument 2 names different: declaration 'sc' definition 'vsc'.
bpp-seq-2.4.0/src/Bpp/Seq/Io/Fasta.cpp:147:74: note: Function 'appendSequencesFromStream' argument 2 names different: declaration 'sc' definition 'vsc'.
bpp-seq-2.4.0/src/Bpp/Seq/Io/GenBank.cpp:50:81: style: Function 'appendSequencesFromStream' argument 2 names different: declaration 'sc' definition 'vsc'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Io/GenBank.h:75:76: note: Function 'appendSequencesFromStream' argument 2 names different: declaration 'sc' definition 'vsc'.
bpp-seq-2.4.0/src/Bpp/Seq/Io/GenBank.cpp:50:81: note: Function 'appendSequencesFromStream' argument 2 names different: declaration 'sc' definition 'vsc'.
bpp-seq-2.4.0/src/Bpp/Seq/Io/Mase.cpp:49:78: style: Function 'appendSequencesFromStream' argument 2 names different: declaration 'sc' definition 'vsc'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Io/Mase.h:177:76: note: Function 'appendSequencesFromStream' argument 2 names different: declaration 'sc' definition 'vsc'.
bpp-seq-2.4.0/src/Bpp/Seq/Io/Mase.cpp:49:78: note: Function 'appendSequencesFromStream' argument 2 names different: declaration 'sc' definition 'vsc'.
bpp-seq-2.4.0/src/Bpp/Seq/Io/MaseTools.cpp:118:14: style: The scope of the variable 'counter' can be reduced. [variableScope]
bpp-seq-2.4.0/src/Bpp/Seq/Io/NexusIoSequence.cpp:70:85: style: Function 'appendAlignmentFromStream' argument 2 names different: declaration 'sc' definition 'vsc'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Io/NexusIoSequence.h:101:72: note: Function 'appendAlignmentFromStream' argument 2 names different: declaration 'sc' definition 'vsc'.
bpp-seq-2.4.0/src/Bpp/Seq/Io/NexusIoSequence.cpp:70:85: note: Function 'appendAlignmentFromStream' argument 2 names different: declaration 'sc' definition 'vsc'.
bpp-seq-2.4.0/src/Bpp/Seq/Io/NexusIoSequence.cpp:96:75: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/Io/PhredPhd.cpp:68:3: style: Variable 'flag' is reassigned a value before the old one has been used. [redundantAssignment]
bpp-seq-2.4.0/src/Bpp/Seq/Io/PhredPhd.cpp:64:0: note: Variable 'flag' is reassigned a value before the old one has been used.
bpp-seq-2.4.0/src/Bpp/Seq/Io/PhredPhd.cpp:68:3: note: Variable 'flag' is reassigned a value before the old one has been used.
bpp-seq-2.4.0/src/Bpp/Seq/Io/PhredPhd.h:94:12: style: The function 'nextSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/ISequenceStream.h:75:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/PhredPhd.h:94:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/PhredPoly.h:64:7: style: Class 'PhredPoly' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/Io/PhredPoly.h:74:12: style: The function 'nextSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/Io/ISequenceStream.h:75:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/PhredPoly.h:74:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/Phylip.cpp:174:76: style: Function 'appendAlignmentFromStream' argument 2 names different: declaration 'sc' definition 'vsc'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/Io/Phylip.h:111:72: note: Function 'appendAlignmentFromStream' argument 2 names different: declaration 'sc' definition 'vsc'.
bpp-seq-2.4.0/src/Bpp/Seq/Io/Phylip.cpp:174:76: note: Function 'appendAlignmentFromStream' argument 2 names different: declaration 'sc' definition 'vsc'.
bpp-seq-2.4.0/src/Bpp/Seq/Io/StreamSequenceIterator.h:88:21: style: The function 'nextSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceIterator.h:59:21: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/StreamSequenceIterator.h:88:21: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/StreamSequenceIterator.h:90:18: style: The function 'hasMoreSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceIterator.h:60:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/StreamSequenceIterator.h:90:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/StreamSequenceIterator.h:129:32: style: The function 'nextSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceIterator.h:88:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/StreamSequenceIterator.h:129:32: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/Io/StreamSequenceIterator.h:131:18: style: The function 'hasMoreSequences' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceIterator.h:60:16: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/Io/StreamSequenceIterator.h:131:18: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:187:7: style: Class 'SimpleSequencePositionIterator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:137:12: style: The function 'operator==' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:83:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:137:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:138:12: style: The function 'operator!=' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:84:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:138:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:141:20: style: The function 'getPosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:68:28: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:141:20: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:142:12: style: The function 'setPosition' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:73:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:142:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:143:11: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:77:19: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:143:11: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:144:19: style: The function 'getChar' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:81:27: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:144:19: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:145:23: style: The function 'getSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:98:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:145:23: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:205:12: style: The function 'hasMorePositions' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:93:20: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequencePositionIterators.h:205:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceTools.cpp:184:7: style: The scope of the variable 'tmp_state' can be reduced. [variableScope]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceTools.cpp:227:7: style: The scope of the variable 'tmp_state' can be reduced. [variableScope]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceTools.cpp:422:7: style: The scope of the variable 'x' can be reduced. [variableScope]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceTools.cpp:422:10: style: The scope of the variable 'y' can be reduced. [variableScope]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceTools.cpp:593:10: style: The scope of the variable 'j' can be reduced. [variableScope]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceTools.cpp:576:51: style: Function 'RNYslice' argument 1 names different: declaration 'sequence' definition 'seq'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceTools.h:427:45: note: Function 'RNYslice' argument 1 names different: declaration 'sequence' definition 'seq'.
bpp-seq-2.4.0/src/Bpp/Seq/SequenceTools.cpp:576:51: note: Function 'RNYslice' argument 1 names different: declaration 'sequence' definition 'seq'.
bpp-seq-2.4.0/src/Bpp/Seq/SequenceTools.cpp:618:51: style: Function 'RNYslice' argument 1 names different: declaration 'sequence' definition 'seq'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceTools.h:428:45: note: Function 'RNYslice' argument 1 names different: declaration 'sequence' definition 'seq'.
bpp-seq-2.4.0/src/Bpp/Seq/SequenceTools.cpp:618:51: note: Function 'RNYslice' argument 1 names different: declaration 'sequence' definition 'seq'.
bpp-seq-2.4.0/src/Bpp/Seq/SequenceTools.cpp:489:75: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceTools.cpp:509:83: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceTools.cpp:556:0: warning: Return value of std::remove() ignored. Elements remain in container. [uselessCallsRemove]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWalker.h:62:5: style: Class 'SequenceWalker' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:314:18: warning: Virtual function 'setContent' is called from constructor 'SequenceWithAnnotation(const std::string&name,const std::string&sequence,const Alphabet*alpha)' at line 67. Dynamic binding is not used. [virtualCallInConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.cpp:67:5: note: Calling setContent
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:314:18: note: setContent is a virtual method
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:108:21: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:61:33: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:108:21: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:112:12: style: The function 'init' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:68:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:112:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:118:26: style: The function 'getType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:73:32: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:118:26: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:120:12: style: The function 'isValidWith' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:82:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:120:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:126:12: style: The function 'isRemovable' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:457:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:126:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:127:12: style: The function 'isShared' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:458:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:127:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:128:12: style: The function 'beforeSequenceChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:459:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:128:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:129:12: style: The function 'afterSequenceChanged' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:460:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:129:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:130:12: style: The function 'beforeSequenceInserted' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:461:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:130:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:131:12: style: The function 'afterSequenceInserted' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:462:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:131:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:132:12: style: The function 'beforeSequenceDeleted' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:463:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:132:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:133:12: style: The function 'afterSequenceDeleted' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:464:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:133:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:134:12: style: The function 'beforeSequenceSubstituted' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:465:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:134:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:135:12: style: The function 'afterSequenceSubstituted' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:466:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:135:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:164:12: style: The function 'merge' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:90:18: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:164:12: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:174:27: style: The function 'getPartAnnotation' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotation.h:98:33: note: Virtual function in base class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithAnnotationTools.h:174:27: note: Function in derived class
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQualityTools.cpp:170:10: style: Condition 'badqual' is always false [knownConditionTrueFalse]
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQualityTools.cpp:169:18: note: Assignment 'badqual=false', assigned value is 0
bpp-seq-2.4.0/src/Bpp/Seq/SequenceWithQualityTools.cpp:170:10: note: Condition 'badqual' is always false
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.cpp:202:61: style: Function 'variabilityShannon' argument 2 names different: declaration 'resolveUnknowns' definition 'resolveUnknown'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.h:126:59: note: Function 'variabilityShannon' argument 2 names different: declaration 'resolveUnknowns' definition 'resolveUnknown'.
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.cpp:202:61: note: Function 'variabilityShannon' argument 2 names different: declaration 'resolveUnknowns' definition 'resolveUnknown'.
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.cpp:222:80: style: Function 'mutualInformation' argument 3 names different: declaration 'resolveUnknowns' definition 'resolveUnknown'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.h:157:78: note: Function 'mutualInformation' argument 3 names different: declaration 'resolveUnknowns' definition 'resolveUnknown'.
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.cpp:222:80: note: Function 'mutualInformation' argument 3 names different: declaration 'resolveUnknowns' definition 'resolveUnknown'.
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.cpp:269:75: style: Function 'jointEntropy' argument 3 names different: declaration 'resolveUnknowns' definition 'resolveUnknown'. [funcArgNamesDifferent]
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.h:191:73: note: Function 'jointEntropy' argument 3 names different: declaration 'resolveUnknowns' definition 'resolveUnknown'.
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.cpp:269:75: note: Function 'jointEntropy' argument 3 names different: declaration 'resolveUnknowns' definition 'resolveUnknown'.
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.cpp:326:22: style: Variable 'c' is assigned a value that is never used. [unreadVariable]
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.cpp:344:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.cpp:365:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.cpp:388:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.cpp:412:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.cpp:435:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.cpp:458:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/SiteTools.cpp:479:76: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.cpp:275:29: warning: 'operator=' should check for assignment to self to avoid problems with dynamic memory. [operatorEqToSelf]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:338:18: warning: Virtual function 'setContent' is called from constructor 'BasicSymbolList(const std::vector<std::string>&list,const Alphabet*alpha)' at line 52. Dynamic binding is not used. [virtualCallInConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.cpp:52:2: note: Calling setContent
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:338:18: note: setContent is a virtual method
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:338:18: warning: Virtual function 'setContent' is called from constructor 'BasicSymbolList(const std::vector<int>&list,const Alphabet*alpha)' at line 58. Dynamic binding is not used. [virtualCallInConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.cpp:58:2: note: Calling setContent
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:338:18: note: setContent is a virtual method
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:582:18: warning: Virtual function 'setContent' is called from constructor 'EdSymbolList(const std::vector<std::string>&list,const Alphabet*alpha)' at line 233. Dynamic binding is not used. [virtualCallInConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.cpp:233:2: note: Calling setContent
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:582:18: note: setContent is a virtual method
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:582:18: warning: Virtual function 'setContent' is called from constructor 'EdSymbolList(const std::vector<int>&list,const Alphabet*alpha)' at line 239. Dynamic binding is not used. [virtualCallInConstructor]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.cpp:239:2: note: Calling setContent
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.h:582:18: note: setContent is a virtual method
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.cpp:160:3: style: Exception should be caught by reference. [catchExceptionByValue]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolList.cpp:375:4: style: Exception should be caught by reference. [catchExceptionByValue]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolListTools.cpp:97:74: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolListTools.cpp:108:85: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-2.4.0/src/Bpp/Seq/SymbolListTools.cpp:109:82: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
[09:03]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbpp-seq-omics/libbpp-seq-omics_2.4.0.orig.tar.gz
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:365:110: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h:78:5: style: Class 'BedGraphFeatureReader' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:326:35: style: The function 'clone' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:143:30: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:326:35: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:329:24: style: The function 'getId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:149:32: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:329:24: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:330:10: style: The function 'setId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:153:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:330:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:331:24: style: The function 'getSequenceId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:158:32: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:331:24: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:332:10: style: The function 'setSequenceId' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:162:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:332:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:333:24: style: The function 'getSource' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:167:32: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:333:24: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:334:10: style: The function 'setSource' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:171:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:334:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:335:24: style: The function 'getType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:176:32: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:335:24: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:336:10: style: The function 'setType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:180:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:336:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:337:18: style: The function 'getStart' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:185:26: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:337:18: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:338:18: style: The function 'getEnd' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:190:26: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:338:18: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:339:10: style: The function 'isStranded' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:202:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:339:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:340:10: style: The function 'isNegativeStrand' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:207:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:340:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:341:10: style: The function 'invert' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:212:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:341:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:344:19: style: The function 'getScore' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:252:27: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:344:19: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:345:10: style: The function 'setScore' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:256:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:345:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:347:24: style: The function 'getAttribute' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:262:32: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:347:24: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:355:18: style: The function 'getAttribute' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:268:26: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:355:18: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:359:10: style: The function 'setAttribute' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:281:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:359:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:363:29: style: The function 'getAttributeList' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:273:37: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:363:29: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:371:10: style: The function 'removeAttribute' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:286:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:371:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:378:14: style: The function 'getRange' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:217:22: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:378:14: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:382:10: style: The function 'overlap' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:232:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:382:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:389:10: style: The function 'overlap' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:237:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:389:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:393:18: style: The function 'includes' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:242:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:393:18: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:397:18: style: The function 'isIncludedIn' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:247:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeature.h:397:18: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h:94:10: style: The function 'hasMoreFeature' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/FeatureReader.h:66:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h:94:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h:95:32: style: The function 'nextFeature' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/FeatureReader.h:67:40: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h:95:32: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h:97:10: style: The function 'getAllFeatures' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/FeatureReader.h:68:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h:97:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h:102:10: style: The function 'getFeaturesOfType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/FeatureReader.h:69:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h:102:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h:109:10: style: The function 'getFeaturesOfSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/FeatureReader.h:70:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h:109:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp:147:91: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:88:5: style: Class 'GffFeatureReader' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:95:10: style: The function 'hasMoreFeature' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/FeatureReader.h:66:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:95:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:96:32: style: The function 'nextFeature' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/FeatureReader.h:67:40: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:96:32: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:98:10: style: The function 'getAllFeatures' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/FeatureReader.h:68:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:98:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:103:10: style: The function 'getFeaturesOfType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/FeatureReader.h:69:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:103:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:110:10: style: The function 'getFeaturesOfSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/FeatureReader.h:70:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gff/GffFeatureReader.h:110:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h:79:5: style: Class 'GtfFeatureReader' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h:86:10: style: The function 'hasMoreFeature' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/FeatureReader.h:66:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h:86:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h:87:32: style: The function 'nextFeature' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/FeatureReader.h:67:40: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h:87:32: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h:89:10: style: The function 'getAllFeatures' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/FeatureReader.h:68:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h:89:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h:94:10: style: The function 'getFeaturesOfType' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/FeatureReader.h:69:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h:94:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h:101:10: style: The function 'getFeaturesOfSequence' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/FeatureReader.h:70:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h:101:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp:87:10: style: The scope of the variable 'phase' can be reduced. [variableScope]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp:102:9: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp:108:9: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Fastq.h:70:7: style: Class 'Fastq' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:339:24: style: The scope of the variable 'partialCount' can be reduced. [variableScope]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:386:22: style: The scope of the variable 'partialCount' can be reduced. [variableScope]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:77:37: style: Variable 'speciesSet' is assigned a value that is never used. [unreadVariable]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp:301:37: style: Variable 'speciesSet' is assigned a value that is never used. [unreadVariable]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafSequence.h:75:5: style: Class 'MafSequence' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:158:5: style: Class 'AbstractFilterMafIterator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:190:5: style: Class 'TrashIteratorAdapter' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:99:10: style: The function 'addIterationListener' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:75:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:99:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:103:15: style: The function 'nextBlock' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:69:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:103:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:116:10: style: The function 'isVerbose' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:71:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:116:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:117:10: style: The function 'setVerbose' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:73:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:117:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:203:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:203:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:241:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:241:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:157:15: style: The function 'nextRemovedBlock' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:141:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:157:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:165:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:165:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:254:15: style: The function 'nextRemovedBlock' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:141:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:254:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:262:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h:262:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h:119:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h:119:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h:89:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h:89:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h:95:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h:95:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h:69:89: performance: Function parameter 'refSpecies' should be passed by const reference. [passedByValue]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h:113:11: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h:119:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h:119:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h:100:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h:100:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h:91:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h:91:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:93:15: style: The function 'nextRemovedBlock' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:141:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:93:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:101:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h:101:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h:100:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h:100:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h:89:15: style: The function 'nextRemovedBlock' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:141:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h:89:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h:97:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h:97:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h:73:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h:73:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:171:18: warning: Virtual function 'setValue' is called from constructor 'SimpleMafStatisticsResult(const std::string&name)' at line 153. Dynamic binding is not used. [virtualCallInConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:153:7: note: Calling setValue
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:171:18: note: setValue is a virtual method
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:152:5: style: Class 'SimpleMafStatisticsResult' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:254:5: style: Class 'AbstractMafStatisticsSimple' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:334:5: style: Class 'SequenceLengthMafStatistics' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:415:5: style: Class 'AbstractSpeciesMultipleSelectionMafStatistics' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:488:9: style: Class 'Categorizer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:629:5: style: Class 'SiteMafStatistics' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:661:5: style: Class 'PolymorphismMafStatistics' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:698:5: style: Class 'SequenceDiversityMafStatistics' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/IterationListener.h:74:5: style: Class 'AbstractStatisticsOutputIterationListener' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:62:1: warning: The class 'MafStatisticsResult' has 'copy constructor' but lack of 'operator='. [copyCtorAndEqOperator]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:158:31: style: The function 'getValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:81:31: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:158:31: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:164:18: style: The function 'setValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:95:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:164:18: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:171:18: style: The function 'setValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:108:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:171:18: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:178:18: style: The function 'setValue' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:121:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:178:18: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:241:32: style: The function 'getResult' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:217:40: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:241:32: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:259:30: style: The function 'getSupportedTags' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:223:38: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:259:30: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:279:17: style: The function 'getShortName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:215:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:279:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:280:17: style: The function 'getFullName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:216:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:280:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:281:10: style: The function 'compute' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:218:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:281:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:296:17: style: The function 'getShortName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:215:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:296:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:297:17: style: The function 'getFullName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:216:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:297:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:298:10: style: The function 'compute' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:218:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:298:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:314:17: style: The function 'getShortName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:215:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:314:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:315:17: style: The function 'getFullName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:216:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:315:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:316:10: style: The function 'compute' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:218:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:316:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:338:17: style: The function 'getShortName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:215:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:338:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:339:17: style: The function 'getFullName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:216:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:339:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:340:10: style: The function 'compute' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:218:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:340:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:363:17: style: The function 'getShortName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:215:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:363:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:364:17: style: The function 'getFullName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:216:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:364:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:365:10: style: The function 'compute' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:218:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:365:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:464:17: style: The function 'getShortName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:215:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:464:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:465:17: style: The function 'getFullName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:216:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:465:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:466:10: style: The function 'compute' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:218:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:466:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:467:30: style: The function 'getSupportedTags' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:223:38: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:467:30: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:546:17: style: The function 'getShortName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:215:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:546:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:547:17: style: The function 'getFullName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:216:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:547:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:548:10: style: The function 'compute' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:218:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:548:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:549:30: style: The function 'getSupportedTags' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:223:38: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:549:30: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:604:17: style: The function 'getShortName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:215:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:604:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:605:17: style: The function 'getFullName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:216:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:605:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:606:10: style: The function 'compute' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:218:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:606:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:607:30: style: The function 'getSupportedTags' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:223:38: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:607:30: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:637:17: style: The function 'getShortName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:215:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:637:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:638:17: style: The function 'getFullName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:216:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:638:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:639:10: style: The function 'compute' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:218:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:639:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:640:30: style: The function 'getSupportedTags' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:223:38: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:640:30: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:672:17: style: The function 'getShortName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:215:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:672:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:673:17: style: The function 'getFullName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:216:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:673:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:674:10: style: The function 'compute' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:218:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:674:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:675:30: style: The function 'getSupportedTags' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:223:38: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:675:30: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:706:17: style: The function 'getShortName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:215:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:706:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:707:17: style: The function 'getFullName' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:216:25: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:707:17: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:708:10: style: The function 'compute' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:218:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:708:10: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:709:30: style: The function 'getSupportedTags' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:223:38: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:709:30: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:101:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:101:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/IterationListener.h:121:18: style: The function 'iterationStarts' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/IterationListener.h:57:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/IterationListener.h:121:18: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/IterationListener.h:122:18: style: The function 'iterationMoves' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/IterationListener.h:58:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/IterationListener.h:122:18: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/IterationListener.h:123:18: style: The function 'iterationStops' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/IterationListener.h:59:18: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/IterationListener.h:123:18: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:444:119: performance: Function parameter 'suffix' should be passed by const reference. [passedByValue]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.h:515:160: performance: Function parameter 'outgroup' should be passed by const reference. [passedByValue]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h:78:92: performance: Function parameter 'statistics' should be passed by const reference. [passedByValue]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafParser.h:99:16: warning: Member variable 'MafParser::cmAlphabet_' is not assigned a value in 'MafParser::operator='. [operatorEqVarError]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafParser.h:109:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafParser.h:109:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:162:7: style: The scope of the variable 'state' can be reduced. [variableScope]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:220:11: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafStatistics.cpp:239:46: error: Uninitialized variable: count [uninitvar]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h:86:15: style: The function 'nextRemovedBlock' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:141:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h:86:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h:94:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h:94:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h:113:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h:113:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/OrderFilterMafIterator.h:127:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/OrderFilterMafIterator.h:127:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h:101:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h:101:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h:178:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h:178:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/OutputMafIterator.h:94:10: performance: Technically the member function 'bpp::OutputMafIterator::writeHeader' can be static. [functionStatic]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp:54:25: note: Technically the member function 'bpp::OutputMafIterator::writeHeader' can be static.
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/OutputMafIterator.h:94:10: note: Technically the member function 'bpp::OutputMafIterator::writeHeader' can be static.
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/OutputMafIterator.h:86:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/OutputMafIterator.h:86:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h:150:10: style: Technically the member function 'bpp::PlinkOutputMafIterator::writePedToFile_' can be const. [functionConst]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp:132:30: note: Technically the member function 'bpp::PlinkOutputMafIterator::writePedToFile_' can be const.
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h:150:10: note: Technically the member function 'bpp::PlinkOutputMafIterator::writePedToFile_' can be const.
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h:138:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h:138:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h:86:15: style: The function 'nextRemovedBlock' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:141:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h:86:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h:94:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h:94:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h:84:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h:84:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp:86:60: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp:86:85: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h:106:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h:106:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp:86:0: style: Same expression used in consecutive assignments of 'nbDistinct' and 'nbGenes'. [duplicateAssignExpression]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp:87:0: note: Same expression used in consecutive assignments of 'nbDistinct' and 'nbGenes'.
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp:86:0: note: Same expression used in consecutive assignments of 'nbDistinct' and 'nbGenes'.
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h:114:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h:114:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp:50:119: performance: Function parameter 'statistics' should be passed by const reference. [passedByValue]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h:83:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h:83:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.h:107:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.h:107:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h:103:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h:103:15: note: Function in derived class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h:81:15: style: The function 'analyseCurrentBlock_' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/MafIterator.h:120:23: note: Virtual function in base class
bpp-seq-omics-2.4.0/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h:81:15: note: Function in derived class
[09:03]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbrahe/libbrahe_1.3.2.orig.tar.gz
libbrahe-1.3.2/BraheTest/BraheTest.cpp:352:9: portability: %d in format string (no. 1) requires 'int' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbrahe-1.3.2/BraheTest/BraheTest.cpp:356:5: warning: %d in format string (no. 1) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
libbrahe-1.3.2/BraheTest/BraheTest.cpp:103:12: style: The scope of the variable 'c' can be reduced. [variableScope]
libbrahe-1.3.2/BraheTest/BraheTest.cpp:104:12: style: The scope of the variable 't' can be reduced. [variableScope]
libbrahe-1.3.2/BraheTest/BraheTest.cpp:166:14: style: The scope of the variable 'result' can be reduced. [variableScope]
libbrahe-1.3.2/BraheTest/BraheTest.cpp:210:14: style: The scope of the variable 'result' can be reduced. [variableScope]
libbrahe-1.3.2/BraheTest/BraheTest.cpp:237:21: style: The scope of the variable 'dummy' can be reduced. [variableScope]
libbrahe-1.3.2/BraheTest/BraheTest.cpp:183:0: style: Variable 'errcnt' is modified but its new value is never used. [unreadVariable]
libbrahe-1.3.2/BraheTest/BraheTest.cpp:227:0: style: Variable 'errcnt' is modified but its new value is never used. [unreadVariable]
libbrahe-1.3.2/src/gcflcm.c:74:14: style: The scope of the variable 'temp' can be reduced. [variableScope]
libbrahe-1.3.2/src/prettyint.c:120:13: style: The scope of the variable 'temp' can be reduced. [variableScope]
libbrahe-1.3.2/src/prettyint.c:122:13: style: The scope of the variable 'hundreds' can be reduced. [variableScope]
libbrahe-1.3.2/src/prettyint.c:217:13: style: The scope of the variable 'x' can be reduced. [variableScope]
libbrahe-1.3.2/src/prettyint.c:217:16: style: The scope of the variable 't' can be reduced. [variableScope]
libbrahe-1.3.2/src/prettyint.c:162:0: error: Memory leak: buffer [memleak]
libbrahe-1.3.2/src/prng.c:492:36: warning: Either the condition 'prng_state!=NULL' is redundant or there is possible null pointer dereference: prng_state. [nullPointerRedundantCheck]
libbrahe-1.3.2/src/prng.c:494:20: note: Assuming that condition 'prng_state!=NULL' is not redundant
libbrahe-1.3.2/src/prng.c:492:36: note: Null pointer dereference
libbrahe-1.3.2/src/prng.c:121:14: style: The scope of the variable 'kk' can be reduced. [variableScope]
libbrahe-1.3.2/src/prng.c:200:14: style: The scope of the variable 'temp' can be reduced. [variableScope]
libbrahe-1.3.2/src/prng.c:224:12: style: The scope of the variable 'i' can be reduced. [variableScope]
libbrahe-1.3.2/src/prng.c:275:14: style: The scope of the variable 'temp' can be reduced. [variableScope]
libbrahe-1.3.2/src/prng.c:313:14: style: The scope of the variable 'temp' can be reduced. [variableScope]
libbrahe-1.3.2/src/prng.c:314:14: style: The scope of the variable 'x' can be reduced. [variableScope]
libbrahe-1.3.2/src/prng.c:352:14: style: The scope of the variable 'x' can be reduced. [variableScope]
libbrahe-1.3.2/src/prng.c:352:17: style: The scope of the variable 'y' can be reduced. [variableScope]
libbrahe-1.3.2/src/prng.c:398:14: style: The scope of the variable 'a' can be reduced. [variableScope]
libbrahe-1.3.2/src/prng.c:398:17: style: The scope of the variable 'b' can be reduced. [variableScope]
libbrahe-1.3.2/src/prng.c:398:20: style: The scope of the variable 'c' can be reduced. [variableScope]
libbrahe-1.3.2/src/prng.c:398:23: style: The scope of the variable 'd' can be reduced. [variableScope]
libbrahe-1.3.2/src/prng.c:398:26: style: The scope of the variable 'e' can be reduced. [variableScope]
libbrahe-1.3.2/src/prng.c:398:29: style: The scope of the variable 'f' can be reduced. [variableScope]
libbrahe-1.3.2/src/prng.c:398:32: style: The scope of the variable 'g' can be reduced. [variableScope]
libbrahe-1.3.2/src/prng.c:398:35: style: The scope of the variable 'h' can be reduced. [variableScope]
libbrahe-1.3.2/src/prng.c:399:9: style: The scope of the variable 'i' can be reduced. [variableScope]
libbrahe-1.3.2/src/rounding.c:92:12: style: The scope of the variable 'scale_factor' can be reduced. [variableScope]
libbrahe-1.3.2/src/simplefft.c:59:9: style: The scope of the variable 'j2' can be reduced. [variableScope]
libbrahe-1.3.2/src/simplefft.c:77:15: style: The scope of the variable 'r' can be reduced. [variableScope]
libbrahe-1.3.2/src/simplefft.c:155:9: style: The scope of the variable 'i' can be reduced. [variableScope]
libbrahe-1.3.2/src/simplefft.c:75:43: style: Function 'brahe_simple_fft2' argument 1 names different: declaration 'data' definition 'x'. [funcArgNamesDifferent]
libbrahe-1.3.2/src/mathtools.h:237:43: note: Function 'brahe_simple_fft2' argument 1 names different: declaration 'data' definition 'x'.
libbrahe-1.3.2/src/simplefft.c:75:43: note: Function 'brahe_simple_fft2' argument 1 names different: declaration 'data' definition 'x'.
libbrahe-1.3.2/src/simplefft.c:153:42: style: Function 'brahe_simple_fft' argument 1 names different: declaration 'data' definition 'x'. [funcArgNamesDifferent]
libbrahe-1.3.2/src/mathtools.h:226:42: note: Function 'brahe_simple_fft' argument 1 names different: declaration 'data' definition 'x'.
libbrahe-1.3.2/src/simplefft.c:153:42: note: Function 'brahe_simple_fft' argument 1 names different: declaration 'data' definition 'x'.
libbrahe-1.3.2/src/simplefft.c:88:9: error: Memory leak: xre [memleak]
libbrahe-1.3.2/src/simplefft.c:88:9: error: Memory leak: xim [memleak]
libbrahe-1.3.2/src/simplefft.c:88:9: error: Memory leak: mag [memleak]
libbrahe-1.3.2/src/sinusoid.c:60:12: style: The scope of the variable 'i' can be reduced. [variableScope]
libbrahe-1.3.2/src/sinusoid.c:60:15: style: The scope of the variable 'n' can be reduced. [variableScope]
libbrahe-1.3.2/src/sinusoid.c:94:12: style: The scope of the variable 'i' can be reduced. [variableScope]
libbrahe-1.3.2/src/sinusoid.c:86:0: error: Memory leak: f [memleak]
libbrahe-1.3.2/src/sinusoid.c:86:0: error: Memory leak: a [memleak]
libbrahe-1.3.2/test/brahe_test_gcflcm.c:151:5: portability: %d in format string (no. 1) requires 'int' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbrahe-1.3.2/test/brahe_test_gcflcm.c:80:14: style: The scope of the variable 'result' can be reduced. [variableScope]
libbrahe-1.3.2/test/brahe_test_gcflcm.c:123:14: style: The scope of the variable 'result' can be reduced. [variableScope]
libbrahe-1.3.2/test/brahe_test_pretty.c:63:12: style: The scope of the variable 'c' can be reduced. [variableScope]
libbrahe-1.3.2/test/brahe_test_pretty.c:64:12: style: The scope of the variable 't' can be reduced. [variableScope]
libbrahe-1.3.2/test/brahe_test_prng.c:174:9: portability: %d in format string (no. 1) requires 'int' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbrahe-1.3.2/test/brahe_test_prng.c:178:5: warning: %d in format string (no. 1) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
libbrahe-1.3.2/test/brahe_test_prng.c:63:21: style: The scope of the variable 'dummy' can be reduced. [variableScope]
[09:03]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbread-board-perl/libbread-board-perl_0.32.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbrowser-open-perl/libbrowser-open-perl_0.04.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbrowserlauncher-java/libbrowserlauncher-java_1.3+dfsg.orig.tar.xz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbs2b/libbs2b_3.1.0+dfsg.orig.tar.gz
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:371:15: portability: Casting from double* to integer* is not portable due to different binary data representations on different platforms. [invalidPointerCast]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:372:15: portability: Casting from double* to integer* is not portable due to different binary data representations on different platforms. [invalidPointerCast]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:384:15: portability: Casting from double* to integer* is not portable due to different binary data representations on different platforms. [invalidPointerCast]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:385:15: portability: Casting from double* to integer* is not portable due to different binary data representations on different platforms. [invalidPointerCast]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:458:15: portability: Casting from float* to integer* is not portable due to different binary data representations on different platforms. [invalidPointerCast]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:459:15: portability: Casting from float* to integer* is not portable due to different binary data representations on different platforms. [invalidPointerCast]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:477:15: portability: Casting from float* to integer* is not portable due to different binary data representations on different platforms. [invalidPointerCast]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:478:15: portability: Casting from float* to integer* is not portable due to different binary data representations on different platforms. [invalidPointerCast]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:424:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:451:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:488:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:534:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:561:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:588:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:625:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:662:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:699:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:736:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:763:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:790:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:827:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:864:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:901:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:938:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:965:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:992:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:1019:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:1046:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:1083:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:1120:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2b.c:1157:9: style: The scope of the variable 'sample_d' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2bclass.h:50:14: performance: Technically the member function 'bs2b_base::runtime_version' can be static. [functionStatic]
libbs2b_3.1.0+dfsg.orig/src/bs2bclass.cpp:91:24: note: Technically the member function 'bs2b_base::runtime_version' can be static.
libbs2b_3.1.0+dfsg.orig/src/bs2bclass.h:50:14: note: Technically the member function 'bs2b_base::runtime_version' can be static.
libbs2b_3.1.0+dfsg.orig/src/bs2bconvert.c:171:3: warning: %d in format string (no. 1) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
libbs2b_3.1.0+dfsg.orig/src/bs2bconvert.c:219:14: style: The scope of the variable 'str' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2bconvert.c:235:6: style: The scope of the variable 'readcount' can be reduced. [variableScope]
libbs2b_3.1.0+dfsg.orig/src/bs2bconvert.c:229:8: style: Variable 'err' is assigned a value that is never used. [unreadVariable]
libbs2b_3.1.0+dfsg.orig/src/bs2bstream.c:204:2: warning: %d in format string (no. 4) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
[09:03]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbsd/libbsd_0.9.1.orig.tar.xz.asc

ftp://ftp.se.debian.org/debian/pool/main/libb/libbsd-arc4random-perl/libbsd-arc4random-perl_1.50.orig.tar.gz
BSD-arc4random-1.50/arc4random.c:159:10: style: The scope of the variable 'si' can be reduced. [variableScope]
[09:03]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbsd-resource-perl/libbsd-resource-perl_1.2911.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbsf-java/libbsf-java_2.4.0.orig.tar.gz
libbsf-java-2.4.0/src/org/apache/bsf/util/JNIUtils.c:68:45: style: Function 'bsf_createbean' argument 2 names different: declaration 'methodname' definition 'classname'. [funcArgNamesDifferent]
libbsf-java-2.4.0/src/org/apache/bsf/util/JNIUtils.h:38:52: note: Function 'bsf_createbean' argument 2 names different: declaration 'methodname' definition 'classname'.
libbsf-java-2.4.0/src/org/apache/bsf/util/JNIUtils.c:68:45: note: Function 'bsf_createbean' argument 2 names different: declaration 'methodname' definition 'classname'.
[09:03]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbson/libbson_1.9.5.orig.tar.gz
libbson-1.9.5/src/bson/bson-macros.h:41:0: error: #error "Unknown operating system." [preprocessorErrorDirective]
libbson-1.9.5/src/bson/bson-compat.h:23:0: error: #error "Only <bson.h> can be included directly." [preprocessorErrorDirective]
libbson-1.9.5/src/bson/bson-decimal128.h:23:0: error: #error "Only <bson.h> can be included directly." [preprocessorErrorDirective]
libbson-1.9.5/src/bson/bson-iter.h:23:0: error: #error "Only <bson.h> can be included directly." [preprocessorErrorDirective]
libbson-1.9.5/src/bson/bson-macros.h:23:0: error: #error "Only <bson.h> can be included directly." [preprocessorErrorDirective]
libbson-1.9.5/src/bson/bson-memory.h:23:0: error: #error "Only <bson.h> can be included directly." [preprocessorErrorDirective]
libbson-1.9.5/src/bson/bson-version-functions.h:19:0: error: #error "Only <bson.h> can be included directly." [preprocessorErrorDirective]
libbson-1.9.5/src/jsonsl/jsonsl.c:1190:12: style: The scope of the variable 'jmp_cur' can be reduced. [variableScope]
libbson-1.9.5/src/jsonsl/jsonsl.c:760:42: style: Function 'jsonsl_strtype' argument 1 names different: declaration 'jt' definition 'type'. [funcArgNamesDifferent]
libbson-1.9.5/src/jsonsl/jsonsl.h:679:42: note: Function 'jsonsl_strtype' argument 1 names different: declaration 'jt' definition 'type'.
libbson-1.9.5/src/jsonsl/jsonsl.c:760:42: note: Function 'jsonsl_strtype' argument 1 names different: declaration 'jt' definition 'type'.
libbson-1.9.5/tests/TestSuite.c:220:8: style: The scope of the variable 'n_read' can be reduced. [variableScope]
libbson-1.9.5/tests/TestSuite.c:388:8: style: The scope of the variable 'fd' can be reduced. [variableScope]
libbson-1.9.5/tests/TestSuite.c:667:8: style: The scope of the variable 'status' can be reduced. [variableScope]
libbson-1.9.5/tests/TestSuite.c:312:4: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/TestSuite.c:328:4: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/corpus-test.c:52:4: style: Variable 'data' is reassigned a value before the old one has been used. [redundantAssignment]
libbson-1.9.5/tests/corpus-test.c:43:0: note: Variable 'data' is reassigned a value before the old one has been used.
libbson-1.9.5/tests/corpus-test.c:52:4: note: Variable 'data' is reassigned a value before the old one has been used.
libbson-1.9.5/tests/corpus-test.c:76:4: style: Variable 'scenario_description' is reassigned a value before the old one has been used. [redundantAssignment]
libbson-1.9.5/tests/corpus-test.c:70:0: note: Variable 'scenario_description' is reassigned a value before the old one has been used.
libbson-1.9.5/tests/corpus-test.c:76:4: note: Variable 'scenario_description' is reassigned a value before the old one has been used.
libbson-1.9.5/tests/json-test.c:230:12: style: The scope of the variable 'test' can be reduced. [variableScope]
libbson-1.9.5/tests/json-test.c:231:10: style: The scope of the variable 'skip_json' can be reduced. [variableScope]
libbson-1.9.5/tests/json-test.c:232:10: style: The scope of the variable 'ext' can be reduced. [variableScope]
libbson-1.9.5/tests/json-test.c:182:7: error: Resource leak: file [resourceLeak]
libbson-1.9.5/tests/test-bcon-basic.c:17:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:34:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:53:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:75:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:94:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:115:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:134:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:143:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:162:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:181:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:199:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:221:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:240:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:259:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:281:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:301:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:320:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:339:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:357:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:375:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:396:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:418:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:440:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:462:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:502:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:527:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:540:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:563:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:581:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:625:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-basic.c:623:22: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-bcon-extract.c:221:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-extract.c:307:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-extract.c:324:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-extract.c:483:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-bcon-extract.c:398:44: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-bcon-extract.c:401:44: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-bcon-extract.c:404:44: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-bson-corpus.c:57:7: warning: %d in format string (no. 1) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson-corpus.c:57:7: warning: %d in format string (no. 2) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson-corpus.c:42:19: style: The scope of the variable 'a_str' can be reduced. [variableScope]
libbson-1.9.5/tests/test-bson-corpus.c:43:19: style: The scope of the variable 'b_str' can be reduced. [variableScope]
libbson-1.9.5/tests/test-bson-corpus.c:44:13: style: The scope of the variable 'i' can be reduced. [variableScope]
libbson-1.9.5/tests/test-bson-corpus.c:124:12: style: The scope of the variable 'decode_dE' can be reduced. [variableScope]
libbson-1.9.5/tests/test-bson-corpus.c:125:12: style: The scope of the variable 'decode_rE' can be reduced. [variableScope]
libbson-1.9.5/tests/test-bson.c:1144:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1144:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1149:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1149:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1154:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1154:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1159:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1159:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1164:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1164:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1170:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1170:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1175:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1175:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1180:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1180:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1185:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1185:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1187:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1187:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1189:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1189:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1191:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1191:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1193:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1193:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1198:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1198:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1200:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1200:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1202:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1202:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1204:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1204:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1206:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1206:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1208:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1208:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1213:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1213:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1218:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1218:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1220:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1220:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1222:4: portability: %zd in format string (no. 1) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:1222:4: portability: %zd in format string (no. 3) requires 'ssize_t' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
libbson-1.9.5/tests/test-bson.c:490:4: style: Variable 'code' is reassigned a value before the old one has been used. [redundantAssignment]
libbson-1.9.5/tests/test-bson.c:418:0: note: Variable 'code' is reassigned a value before the old one has been used.
libbson-1.9.5/tests/test-bson.c:490:4: note: Variable 'code' is reassigned a value before the old one has been used.
libbson-1.9.5/tests/test-bson.c:130:13: style: The scope of the variable 'i' can be reduced. [variableScope]
libbson-1.9.5/tests/test-bson.c:823:12: style: The scope of the variable 'tmp' can be reduced. [variableScope]
libbson-1.9.5/tests/test-bson.c:1390:12: style: The scope of the variable 'b' can be reduced. [variableScope]
libbson-1.9.5/tests/test-bson.c:1092:4: warning: String literal compared with variable 'collection'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-iter.c:219:12: style: The scope of the variable 'b' can be reduced. [variableScope]
libbson-1.9.5/tests/test-iter.c:73:4: warning: String literal compared with variable 's'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-json.c:864:13: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-json.c:911:7: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-json.c:1694:7: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-json.c:1843:7: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-json.c:1908:7: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-json.c:1928:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-json.c:2291:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-json.c:2359:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-json.c:2380:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-json.c:2403:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-json.c:2426:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-json.c:2450:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-json.c:2651:4: warning: %u in format string (no. 1) requires 'unsigned int' but the argument type is 'signed int'. [invalidPrintfArgType_uint]
libbson-1.9.5/tests/test-json.c:107:10: style: The scope of the variable 'str' can be reduced. [variableScope]
libbson-1.9.5/tests/test-json.c:893:12: style: The scope of the variable 'compare' can be reduced. [variableScope]
libbson-1.9.5/tests/test-json.c:1086:9: style: The scope of the variable 'r' can be reduced. [variableScope]
libbson-1.9.5/tests/test-json.c:1246:9: style: The scope of the variable 'r' can be reduced. [variableScope]
libbson-1.9.5/tests/test-json.c:1684:9: style: The scope of the variable 'r' can be reduced. [variableScope]
libbson-1.9.5/tests/test-json.c:1715:9: style: The scope of the variable 'r' can be reduced. [variableScope]
libbson-1.9.5/tests/test-json.c:1819:9: style: The scope of the variable 'r' can be reduced. [variableScope]
libbson-1.9.5/tests/test-json.c:1857:9: style: The scope of the variable 'r' can be reduced. [variableScope]
libbson-1.9.5/tests/test-json.c:2119:10: style: The scope of the variable 'j' can be reduced. [variableScope]
libbson-1.9.5/tests/test-json.c:2781:12: style: The scope of the variable 'bson_expected' can be reduced. [variableScope]
libbson-1.9.5/tests/test-json.c:1026:63: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-json.c:1077:46: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-json.c:2836:4: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-json.c:2838:4: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-json.c:2842:4: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-json.c:2847:4: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-json.c:2853:4: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-json.c:2858:4: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-json.c:2861:4: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-json.c:2864:4: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-json.c:2868:4: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-json.c:2870:4: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-json.c:2874:4: portability: Passing NULL after the last typed argument to a variadic function leads to undefined behaviour. [varFuncNullUB]
libbson-1.9.5/tests/test-json.c:275:4: warning: String literal compared with variable 'str'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-json.c:443:4: warning: String literal compared with variable 'str'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-json.c:462:4: warning: String literal compared with variable 'str'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-json.c:471:4: warning: String literal compared with variable 'str'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-json.c:481:4: warning: String literal compared with variable 'str'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-json.c:493:4: warning: String literal compared with variable 'str'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-json.c:514:4: warning: String literal compared with variable 'str'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-json.c:541:4: warning: String literal compared with variable 'str'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-json.c:573:4: warning: String literal compared with variable 'str'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-json.c:617:4: warning: String literal compared with variable 'str'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-json.c:1131:4: warning: String literal compared with variable 'pattern'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-json.c:1132:4: warning: String literal compared with variable 'flags'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-json.c:1165:4: warning: String literal compared with variable 'flags'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-json.c:1173:4: warning: String literal compared with variable 'flags'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-json.c:1284:4: warning: String literal compared with variable 'bar'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-json.c:2738:4: warning: String literal compared with variable 'match'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-oid.c:292:20: style: The scope of the variable 'context' can be reduced. [variableScope]
libbson-1.9.5/tests/test-string.c:205:12: style: The scope of the variable 'rv' can be reduced. [variableScope]
libbson-1.9.5/tests/test-string.c:282:4: warning: String literal compared with variable 'buf'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-string.c:284:4: warning: String literal compared with variable 'buf'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-utf8.c:96:4: warning: String literal compared with variable 'str'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-utf8.c:100:4: warning: String literal compared with variable 'str'. Did you intend to use strcmp() instead? [literalWithCharPtrCompare]
libbson-1.9.5/tests/test-value.c:28:24: style: The scope of the variable 'value' can be reduced. [variableScope]
[09:03]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbson-perl/libbson-perl_1.6.7.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbson-xs-perl/libbson-xs-perl_0.4.3.orig.tar.gz
BSON-XS-v0.4.3/bson/bson-compat.h:23:0: error: #error "Only <bson.h> can be included directly." [preprocessorErrorDirective]
BSON-XS-v0.4.3/bson/bson-decimal128.h:23:0: error: #error "Only <bson.h> can be included directly." [preprocessorErrorDirective]
BSON-XS-v0.4.3/bson/bson-iter.h:23:0: error: #error "Only <bson.h> can be included directly." [preprocessorErrorDirective]
BSON-XS-v0.4.3/bson/bson-macros.h:23:0: error: #error "Only <bson.h> can be included directly." [preprocessorErrorDirective]
BSON-XS-v0.4.3/bson/bson-macros.h:42:0: error: #error "Unknown operating system." [preprocessorErrorDirective]
BSON-XS-v0.4.3/bson/bson-memory.h:23:0: error: #error "Only <bson.h> can be included directly." [preprocessorErrorDirective]
BSON-XS-v0.4.3/bson/bson-version.h:19:0: error: #error "Only <bson.h> can be included directly." [preprocessorErrorDirective]
[09:03]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbssolv-perl/libbssolv-perl_0.09.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbtbb/libbtbb_2018.06.R1.orig.tar.gz
libbtbb-2018-06-R1/lib/src/bluetooth_le_packet.c:542:9: style: The scope of the variable 'opcode' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_le_packet.c:306:50: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
libbtbb-2018-06-R1/lib/src/bluetooth_le_packet.c:307:50: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
libbtbb-2018-06-R1/lib/src/bluetooth_le_packet.c:422:45: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1385:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1387:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:163:11: style: The scope of the variable 'new_error' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:372:8: style: The scope of the variable 'symbols' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:425:11: style: The scope of the variable 'syncword' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:426:8: style: The scope of the variable 'symbols' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:554:6: style: The scope of the variable 'a' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:554:9: style: The scope of the variable 'b' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:554:12: style: The scope of the variable 'c' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:592:16: style: The scope of the variable 'check' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:593:11: style: The scope of the variable 'data' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:593:17: style: The scope of the variable 'codeword' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:673:7: style: The scope of the variable 'bit' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1025:6: style: The scope of the variable 'bits' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1046:8: style: The scope of the variable 'corrected' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1111:6: style: The scope of the variable 'bits' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1204:10: style: The scope of the variable 'UAP' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1377:9: style: The scope of the variable 'b' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1377:12: style: The scope of the variable 'c' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:445:39: style: Function 'btbb_find_ac' argument 5 names different: declaration 'pkt' definition 'pkt_ptr'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/btbb.h:94:23: note: Function 'btbb_find_ac' argument 5 names different: declaration 'pkt' definition 'pkt_ptr'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:445:39: note: Function 'btbb_find_ac' argument 5 names different: declaration 'pkt' definition 'pkt_ptr'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:467:51: style: Function 'btbb_packet_set_data' argument 2 names different: declaration 'syms' definition 'data'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/btbb.h:117:12: note: Function 'btbb_packet_set_data' argument 2 names different: declaration 'syms' definition 'data'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:467:51: note: Function 'btbb_packet_set_data' argument 2 names different: declaration 'syms' definition 'data'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:708:39: style: Function 'crc_check' argument 2 names different: declaration 'p' definition 'pkt'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.h:124:39: note: Function 'crc_check' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:708:39: note: Function 'crc_check' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:783:33: style: Function 'fhs' argument 2 names different: declaration 'p' definition 'pkt'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.h:115:33: note: Function 'fhs' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:783:33: note: Function 'fhs' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:898:32: style: Function 'DM' argument 2 names different: declaration 'p' definition 'pkt'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.h:116:32: note: Function 'DM' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:898:32: note: Function 'DM' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:962:32: style: Function 'DH' argument 2 names different: declaration 'p' definition 'pkt'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.h:117:32: note: Function 'DH' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:962:32: note: Function 'DH' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1013:33: style: Function 'EV3' argument 2 names different: declaration 'p' definition 'pkt'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.h:118:33: note: Function 'EV3' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1013:33: note: Function 'EV3' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1044:33: style: Function 'EV4' argument 2 names different: declaration 'p' definition 'pkt'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.h:119:33: note: Function 'EV4' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1044:33: note: Function 'EV4' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1099:33: style: Function 'EV5' argument 2 names different: declaration 'p' definition 'pkt'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.h:120:33: note: Function 'EV5' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1099:33: note: Function 'EV5' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1131:32: style: Function 'HV' argument 2 names different: declaration 'p' definition 'pkt'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.h:121:32: note: Function 'HV' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1131:32: note: Function 'HV' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1178:43: style: Function 'try_clock' argument 2 names different: declaration 'p' definition 'pkt'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.h:132:43: note: Function 'try_clock' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1178:43: note: Function 'try_clock' argument 2 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1340:31: style: Function 'tun_format' argument 1 names different: declaration 'p' definition 'pkt'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.h:127:31: note: Function 'tun_format' argument 1 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1340:31: note: Function 'tun_format' argument 1 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1411:36: style: Function 'lap_from_fhs' argument 1 names different: declaration 'p' definition 'pkt'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.h:135:36: note: Function 'lap_from_fhs' argument 1 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1411:36: note: Function 'lap_from_fhs' argument 1 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1418:35: style: Function 'uap_from_fhs' argument 1 names different: declaration 'p' definition 'pkt'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.h:138:35: note: Function 'uap_from_fhs' argument 1 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1418:35: note: Function 'uap_from_fhs' argument 1 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1425:36: style: Function 'nap_from_fhs' argument 1 names different: declaration 'p' definition 'pkt'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.h:141:36: note: Function 'nap_from_fhs' argument 1 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1425:36: note: Function 'nap_from_fhs' argument 1 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1432:38: style: Function 'clock_from_fhs' argument 1 names different: declaration 'p' definition 'pkt'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_packet.h:144:38: note: Function 'clock_from_fhs' argument 1 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_packet.c:1432:38: note: Function 'clock_from_fhs' argument 1 names different: declaration 'p' definition 'pkt'.
libbtbb-2018-06-R1/lib/src/bluetooth_piconet.c:415:22: style: The scope of the variable 'f_dash' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_piconet.c:616:6: style: The scope of the variable 'index' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_piconet.c:617:10: style: The scope of the variable 'channel' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_piconet.c:840:15: style: The scope of the variable 'tmp' can be reduced. [variableScope]
libbtbb-2018-06-R1/lib/src/bluetooth_piconet.c:171:28: style: Function 'precalc' argument 1 names different: declaration 'pnet' definition 'pn'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_piconet.h:108:28: note: Function 'precalc' argument 1 names different: declaration 'pnet' definition 'pn'.
libbtbb-2018-06-R1/lib/src/bluetooth_piconet.c:171:28: note: Function 'precalc' argument 1 names different: declaration 'pnet' definition 'pn'.
libbtbb-2018-06-R1/lib/src/bluetooth_piconet.c:197:49: style: Function 'address_precalc' argument 2 names different: declaration 'pnet' definition 'pn'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_piconet.h:111:49: note: Function 'address_precalc' argument 2 names different: declaration 'pnet' definition 'pn'.
libbtbb-2018-06-R1/lib/src/bluetooth_piconet.c:197:49: note: Function 'address_precalc' argument 2 names different: declaration 'pnet' definition 'pn'.
libbtbb-2018-06-R1/lib/src/bluetooth_piconet.c:412:42: style: Function 'single_hop' argument 2 names different: declaration 'pnet' definition 'pn'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_piconet.h:122:42: note: Function 'single_hop' argument 2 names different: declaration 'pnet' definition 'pn'.
libbtbb-2018-06-R1/lib/src/bluetooth_piconet.c:412:42: note: Function 'single_hop' argument 2 names different: declaration 'pnet' definition 'pn'.
libbtbb-2018-06-R1/lib/src/bluetooth_piconet.c:444:35: style: Function 'hop' argument 2 names different: declaration 'pnet' definition 'pn'. [funcArgNamesDifferent]
libbtbb-2018-06-R1/lib/src/bluetooth_piconet.h:125:35: note: Function 'hop' argument 2 names different: declaration 'pnet' definition 'pn'.
libbtbb-2018-06-R1/lib/src/bluetooth_piconet.c:444:35: note: Function 'hop' argument 2 names different: declaration 'pnet' definition 'pn'.
libbtbb-2018-06-R1/lib/src/pcap-common.h:56:0: error: #error "FIXME: need to support non-GNU compiler" [preprocessorErrorDirective]
libbtbb-2018-06-R1/lib/src/pcapng.c:295:13: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
libbtbb-2018-06-R1/tests/test_fec23.c:31:11: style: The scope of the variable 'optr' can be reduced. [variableScope]
libbtbb-2018-06-R1/tests/test_header.c:51:11: style: Unused variable: optr [unusedVariable]
libbtbb-2018-06-R1/tests/test_header.c:52:12: style: Unused variable: j [unusedVariable]
libbtbb-2018-06-R1/tests/test_header.c:52:20: style: Unused variable: err [unusedVariable]
libbtbb-2018-06-R1/tests/test_syndromes.c:32:14: style: The scope of the variable 'syndrome' can be reduced. [variableScope]
libbtbb-2018-06-R1/tests/test_syndromes.c:32:24: style: The scope of the variable 'syncword' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbb/packet-btbb.c:219:2: style: Assignment of function parameter has no effect outside the function. [uselessAssignmentArg]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbb/packet-btbb.c:272:2: style: Assignment of function parameter has no effect outside the function. [uselessAssignmentArg]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbb/packet-btbb.c:279:14: style: The scope of the variable 'btbb_item' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbb/packet-btbb.c:279:26: style: The scope of the variable 'meta_item' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbb/packet-btbb.c:279:38: style: The scope of the variable 'pkthdr_item' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbb/packet-btbb.c:280:14: style: The scope of the variable 'btbb_tree' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbb/packet-btbb.c:280:26: style: The scope of the variable 'meta_tree' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbb/packet-btbb.c:280:38: style: The scope of the variable 'pkthdr_tree' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbb/packet-btbb.c:281:6: style: The scope of the variable 'offset' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbb/packet-btbb.c:259:4: error: Address of local auto-variable assigned to a function parameter. [autoVariables]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbb/packet-btbrlmp.c:1146:2: style: Assignment of function parameter has no effect outside the function. [uselessAssignmentArg]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbb/packet-btbrlmp.c:1116:14: style: Unused variable: item [unusedVariable]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbredr/packet-btbredr.c:243:2: style: Assignment of function parameter has no effect outside the function. [uselessAssignmentArg]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbredr/packet-btbredr.c:302:2: style: Assignment of function parameter has no effect outside the function. [uselessAssignmentArg]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbredr/packet-btbredr.c:309:14: style: The scope of the variable 'btbredr_item' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbredr/packet-btbredr.c:309:29: style: The scope of the variable 'meta_item' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbredr/packet-btbredr.c:309:41: style: The scope of the variable 'pkthdr_item' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbredr/packet-btbredr.c:310:14: style: The scope of the variable 'btbredr_tree' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbredr/packet-btbredr.c:310:29: style: The scope of the variable 'meta_tree' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbredr/packet-btbredr.c:310:41: style: The scope of the variable 'pkthdr_tree' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbredr/packet-btbredr.c:311:6: style: The scope of the variable 'offset' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbredr/packet-btbredr.c:289:4: error: Address of local auto-variable assigned to a function parameter. [autoVariables]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbredr/packet-btlmp.c:1146:2: style: Assignment of function parameter has no effect outside the function. [uselessAssignmentArg]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btbredr/packet-btlmp.c:1116:14: style: Unused variable: item [unusedVariable]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btle/packet-btle.c:278:26: style: The scope of the variable 'pkthdr_item' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btle/packet-btle.c:279:26: style: The scope of the variable 'pkthdr_tree' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btle/packet-btle.c:656:22: style: Unused variable: btle_handle [unusedVariable]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btle/packet-btle.c:408:6: error: Address of local auto-variable assigned to a function parameter. [autoVariables]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btsm/packet-btsm.c:164:14: style: The scope of the variable 'btsm_item' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins-legacy/btsm/packet-btsm.c:165:14: style: The scope of the variable 'btsm_tree' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins/btbb/packet-btbb.c:219:2: style: Assignment of function parameter has no effect outside the function. [uselessAssignmentArg]
libbtbb-2018-06-R1/wireshark/plugins/btbb/packet-btbb.c:271:2: style: Assignment of function parameter has no effect outside the function. [uselessAssignmentArg]
libbtbb-2018-06-R1/wireshark/plugins/btbb/packet-btbb.c:278:14: style: The scope of the variable 'btbb_item' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins/btbb/packet-btbb.c:278:26: style: The scope of the variable 'meta_item' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins/btbb/packet-btbb.c:278:38: style: The scope of the variable 'pkthdr_item' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins/btbb/packet-btbb.c:279:14: style: The scope of the variable 'btbb_tree' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins/btbb/packet-btbb.c:279:26: style: The scope of the variable 'meta_tree' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins/btbb/packet-btbb.c:279:38: style: The scope of the variable 'pkthdr_tree' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins/btbb/packet-btbb.c:280:6: style: The scope of the variable 'offset' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins/btbb/packet-btbrlmp.c:1146:2: style: Assignment of function parameter has no effect outside the function. [uselessAssignmentArg]
libbtbb-2018-06-R1/wireshark/plugins/btbb/packet-btbrlmp.c:1116:14: style: Unused variable: item [unusedVariable]
libbtbb-2018-06-R1/wireshark/plugins/btbredr/packet-btbredr.c:243:2: style: Assignment of function parameter has no effect outside the function. [uselessAssignmentArg]
libbtbb-2018-06-R1/wireshark/plugins/btbredr/packet-btbredr.c:301:2: style: Assignment of function parameter has no effect outside the function. [uselessAssignmentArg]
libbtbb-2018-06-R1/wireshark/plugins/btbredr/packet-btbredr.c:308:14: style: The scope of the variable 'btbredr_item' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins/btbredr/packet-btbredr.c:308:29: style: The scope of the variable 'meta_item' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins/btbredr/packet-btbredr.c:308:41: style: The scope of the variable 'pkthdr_item' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins/btbredr/packet-btbredr.c:309:14: style: The scope of the variable 'btbredr_tree' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins/btbredr/packet-btbredr.c:309:29: style: The scope of the variable 'meta_tree' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins/btbredr/packet-btbredr.c:309:41: style: The scope of the variable 'pkthdr_tree' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins/btbredr/packet-btbredr.c:310:6: style: The scope of the variable 'offset' can be reduced. [variableScope]
libbtbb-2018-06-R1/wireshark/plugins/btbredr/packet-btlmp.c:1146:2: style: Assignment of function parameter has no effect outside the function. [uselessAssignmentArg]
libbtbb-2018-06-R1/wireshark/plugins/btbredr/packet-btlmp.c:1116:14: style: Unused variable: item [unusedVariable]
[09:03]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbtm-java/libbtm-java_2.1.4.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbuffy/libbuffy_1.9.2.orig.tar.gz
libbuffy-1.9.2/buffy/config/config-tut.cc:128:17: style: Unused variable: locations [unusedVariable]
libbuffy-1.9.2/buffy/config/oldloader.cc:151:15: style: C-style pointer casting [cstyleCast]
libbuffy-1.9.2/buffy/config/oldloader.cc:168:15: style: C-style pointer casting [cstyleCast]
libbuffy-1.9.2/buffy/config/oldloader.cc:184:15: style: C-style pointer casting [cstyleCast]
libbuffy-1.9.2/buffy/config/oldloader.cc:45:7: performance: Technically the member function 'buffy::config::::Parser::parseBool' can be static. [functionStatic]
libbuffy-1.9.2/buffy/config/oldloader.cc:50:6: performance: Technically the member function 'buffy::config::::Parser::parseInt' can be static. [functionStatic]
libbuffy-1.9.2/buffy/config/oldloader.cc:41:2: style: Struct 'Parser' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libbuffy-1.9.2/buffy/utils/from.cc:90:12: style: The scope of the variable 'len' can be reduced. [variableScope]
[09:03]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbultitude-clojure/libbultitude-clojure_0.2.8.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libburn/libburn_1.4.8.orig.tar.gz.asc

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-br-ids-perl/libbusiness-br-ids-perl_0.0022.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-creditcard-perl/libbusiness-creditcard-perl_0.36.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-edi-perl/libbusiness-edi-perl_0.05.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-edifact-interchange-perl/libbusiness-edifact-interchange-perl_0.07.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-hours-perl/libbusiness-hours-perl_0.12.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-isbn-data-perl/libbusiness-isbn-data-perl_20140910.003.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-isbn-perl/libbusiness-isbn-perl_3.004.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-isin-perl/libbusiness-isin-perl_0.20.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-ismn-perl/libbusiness-ismn-perl_1.132.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-issn-perl/libbusiness-issn-perl_1.003.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-onlinepayment-authorizenet-perl/libbusiness-onlinepayment-authorizenet-perl_3.23.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-onlinepayment-ippay-perl/libbusiness-onlinepayment-ippay-perl_0.09.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-onlinepayment-openecho-perl/libbusiness-onlinepayment-openecho-perl_0.03.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-onlinepayment-payconnect-perl/libbusiness-onlinepayment-payconnect-perl_0.02.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-onlinepayment-payflowpro-perl/libbusiness-onlinepayment-payflowpro-perl_1.01.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-onlinepayment-paymentech-perl/libbusiness-onlinepayment-paymentech-perl_2.07.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-onlinepayment-perl/libbusiness-onlinepayment-perl_3.05.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-onlinepayment-tclink-perl/libbusiness-onlinepayment-tclink-perl_1.03.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-onlinepayment-transactioncentral-perl/libbusiness-onlinepayment-transactioncentral-perl_0.06.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-onlinepayment-viaklix-perl/libbusiness-onlinepayment-viaklix-perl_0.02.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-paypal-api-perl/libbusiness-paypal-api-perl_0.76.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-tax-vat-validation-perl/libbusiness-tax-vat-validation-perl_1.11.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbusiness-us-usps-webtools-perl/libbusiness-us-usps-webtools-perl_1.122.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbytelist-java/libbytelist-java_1.0.6.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbytes-random-secure-perl/libbytes-random-secure-perl_0.29.orig.tar.gz

ftp://ftp.se.debian.org/debian/pool/main/libb/libbytesize/libbytesize_1.4.orig.tar.gz
libbytesize-1.4/src/bs_size.c:175:5: style: Variable 'pos' is reassigned a value before the old one has been used. [redundantAssignment]
libbytesize-1.4/src/bs_size.c:167:0: note: Variable 'pos' is reassigned a value before the old one has been used.
libbytesize-1.4/src/bs_size.c:175:5: note: Variable 'pos' is reassigned a value before the old one has been used.
libbytesize-1.4/src/bs_size.c:438:5: style: Variable 'radix_char' is reassigned a value before the old one has been used. [redundantAssignment]
libbytesize-1.4/src/bs_size.c:430:0: note: Variable 'radix_char' is reassigned a value before the old one has been used.
libbytesize-1.4/src/bs_size.c:438:5: note: Variable 'radix_char' is reassigned a value before the old one has been used.
libbytesize-1.4/src/bs_size.c:523:5: style: Variable 'ret' is reassigned a value before the old one has been used. [redundantAssignment]
libbytesize-1.4/src/bs_size.c:521:0: note: Variable 'ret' is reassigned a value before the old one has been used.
libbytesize-1.4/src/bs_size.c:523:5: note: Variable 'ret' is reassigned a value before the old one has been used.
libbytesize-1.4/src/bs_size.c:892:5: style: Variable 'radix_char' is reassigned a value before the old one has been used. [redundantAssignment]
libbytesize-1.4/src/bs_size.c:889:0: note: Variable 'radix_char' is reassigned a value before the old one has been used.
libbytesize-1.4/src/bs_size.c:892:5: note: Variable 'radix_char' is reassigned a value before the old one has been used.
libbytesize-1.4/src/bs_size.c:898:5: style: Variable 'loc_float_str' is reassigned a value before the old one has been used. [redundantAssignment]
libbytesize-1.4/src/bs_size.c:890:0: note: Variable 'loc_float_str' is reassigned a value before the old one has been used.
libbytesize-1.4/src/bs_size.c:898:5: note: Variable 'loc_float_str' is reassigned a value before the old one has been used.
libbytesize-1.4/src/bs_size.c:933:5: style: Variable 'radix_char' is reassigned a value before the old one has been used. [redundantAssignment]
libbytesize-1.4/src/bs_size.c:930:0: note: Variable 'radix_char' is reassigned a value before the old one has been used.
libbytesize-1.4/src/bs_size.c:933:5: note: Variable 'radix_char' is reassigned a value before the old one has been used.
libbytesize-1.4/src/bs_size.c:939:5: style: Variable 'loc_float_str' is reassigned a value before the old one has been used. [redundantAssignment]
libbytesize-1.4/src/bs_size.c:931:0: note: Variable 'loc_float_str' is reassigned a value before the old one has been used.
libbytesize-1.4/src/bs_size.c:939:5: note: Variable 'loc_float_str' is reassigned a value before the old one has been used.
libbytesize-1.4/src/gettext.h:216:15: style: The scope of the variable 'translation' can be reduced. [variableScope]
libbytesize-1.4/src/gettext.h:262:15: style: The scope of the variable 'translation' can be reduced. [variableScope]
libbytesize-1.4/src/bs_size.c:545:14: style: The scope of the variable 'ret' can be reduced. [variableScope]
libbytesize-1.4/src/bs_size.c:671:10: style: The scope of the variable 'at_radix' can be reduced. [variableScope]
libbytesize-1.4/src/bs_size.c:1034:54: style: Function 'bs_size_shrink_div_int' argument 2 names different: declaration 'shrink_divisor' definition 'divisor'. [funcArgNamesDifferent]
libbytesize-1.4/src/bs_size.h:125:54: note: Function 'bs_size_shrink_div_int' argument 2 names different: declaration 'shrink_divisor' definition 'divisor'.
libbytesize-1.4/src/bs_size.c:1034:54: note: Function 'bs_size_shrink_div_int' argument 2 names different: declaration 'shrink_divisor' definition 'divisor'.
libbytesize-1.4/src/bs_size.c:1231:37: style: Function 'bs_size_cmp_bytes' argument 1 names different: declaration 'size1' definition 'size'. [funcArgNamesDifferent]
libbytesize-1.4/src/bs_size.h:133:37: note: Function 'bs_size_cmp_bytes' argument 1 names different: declaration 'size1' definition 'size'.
libbytesize-1.4/src/bs_size.c:1231:37: note: Function 'bs_size_cmp_bytes' argument 1 names different: declaration 'size1' definition 'size'.
[09:03]

ftp://ftp.se.debian.org/debian/pool/main/libb/libbz2-ruby/libbz2-ruby_0.2.2.orig.tar.gz
bz2-0.2.2/bz2.c:464:6: warning: Either the condition 'bziv' is redundant or there is possible null pointer dereference: bziv. [nullPointerRedundantCheck]
bz2-0.2.2/bz2.c:456:6: note: Assuming that condition 'bziv' is not redundant
bz2-0.2.2/bz2.c:464:6: note: Null pointer dereference
bz2-0.2.2/bz2.c:465:6: warning: Either the condition 'bziv' is redundant or there is possible null pointer dereference: bziv. [nullPointerRedundantCheck]
bz2-0.2.2/bz2.c:456:6: note: Assuming that condition 'bziv' is not redundant
bz2-0.2.2/bz2.c:465:6: note: Null pointer dereference
bz2-0.2.2/bz2.c:290:21: style: The scope of the variable 'bzf' can be reduced. [variableScope]
bz2-0.2.2/bz2.c:439:12: style: The scope of the variable 'fptr' can be reduced. [variableScope]
bz2-0.2.2/bz2.c:733:9: style: The scope of the variable 'total' can be reduced. [variableScope]
bz2-0.2.2/bz2.c:733:19: style: The scope of the variable 'nex' can be reduced. [variableScope]
bz2-0.2.2/bz2.c:822:9: style: The scope of the variable 'total' can be reduced. [variableScope]
bz2-0.2.2/bz2.c:1182:21: style: The scope of the variable 'bzf' can be reduced. [variableScope]
[09:03]

DATE 2018-08-22
TIME 09:03:59